Polyodon spathula (Mississippi paddlefish): 121326415
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Entry
121326415 CDS
T07273
Symbol
abca4b
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121326415 (abca4b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121326415 (abca4b)
Transporters [BR:
pspa02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121326415 (abca4b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
ACT_13
Motif
Other DBs
NCBI-GeneID:
121326415
NCBI-ProteinID:
XP_041125605
LinkDB
All DBs
Position
14:complement(10195725..10231555)
Genome browser
AA seq
2339 aa
AA seq
DB search
MGTSSQISLLLWKNWTLRKRQKLRFIVELLWPLTLFVVLVWLRKANPLYQQHECHFPNKA
MPSAGVLPWLQGMFCNANNPCFQHTTHGESAGVVSNYNNSILARFYADSQELLFSKPEFQ
QLERVWEELGVMSDFMDTIRTNPARISGRGVKIEDILKDDETLTGFLLRDCRFSDSVVTQ
LIKAQVRIEQFAFGVPDLTLKDIACSQTLLERFIIFTSRRGMHAVRNAMCVLSQQRLQKI
EDVLYANIDFFKLFHILPSVLDNHSSGVDLRFWGQVLSNVFVLLQELIKRNSFNDLLQVL
YPLFQDGGPSSFTQLMNSVSNLFCGYPEGEGSRVFSFNWYEDNNYKAFLGIDGSKKQPNY
VYDKTTSLFCNSLIQNLESNPITKIAWNSMKPLLMGKILYAPDSPAVRQILKNANTTFEE
LERLRNMGLAWEEVGPQVWNFFQSSVQMNMIRDTIKNPTVTGFIDRHLEDTEFSSKDILN
FLYNGPPSSRPEDMLDFDWRNIFNVTDQVIRLFNQYAECLNLDKFVGHSDEVQLTHQALY
LLQENKFWAGIVFLDMFPWTNKLPTHVKFKIRMDIDVVERTNKIKDRYWDPGPRADPLDD
LRYIWGGFAYLQDIIEHGIIRSHTNKDVPLGLYLQQMPYPCYVDDLFMLTLNRCFPMFMV
LAWIYSVSMIVKSIVLEKELRLKETLKVMGVSNGVIWYTWFIDSFLMMATSTGILTFVIM
EGNVLHYSNPAIVFLFLLTFTVATIMQCFLMSVFFNKANLAAACSGIIYFTLYLPHILCF
AWQDRITKNMKILVSLLSPVAFGFGTEYLSRYEEQGLGLQWDNICTSPLEGDDFNFFCSI
RMMVFDAFFYGALAWYLDNVFPGQYGIARPWYFPLQHSYWAGPEPSLPEKPAPTEDKGEI
KDGKEEEKSQKSSEKPVTENKTESKEPEKKPCKHKEKQEKEEKEKEEMLKKEAEAEKKEA
ETILGNPFLEAEPAGLVVGVVVQNLVKAFDGCSRPAVDGLNITFYEGQITSFLGHNGAGK
TTTMSVLTGLYPPTSGTAIIKGKDIRTDIDTIRQSLGMCPQHNILFHHLTVAEHILFYAQ
LKGKPKAEAEKEVEEMLEDIGLPHKQNEEAQNLSGGMQRKLSVAMAFVGGAKVVILDEPT
SGVDPYSRRSIWDLLLKYRSGRTIILSTHHMDEADLLGDRVAIISKGKLLCCGSPLFLKN
CFGIGFYLTLVRRMRCVKQDKKKESECGCKADCSCSCSTCTKFKEECHTQTQTQTHTFEQ
EMDGDIESITSLIHHHVPEAKLIEMIGQEVTYLLPNKDFKHRAYASLFRELEETLGDMGL
SSFGISDTSLEEIFLKVTADAETATGVGNPEEWMLQHRKLGNGFSAENAEVKHLASANGQ
RAPENSPNDASDGKGSQQIKGAGLVFLQFKALLIKRLYHATRSQKDFLAQIVLPANFVLL
ALIFTLIIPPFGEYPSLSLHPWMYGKQFTFFSNEQPESEPMKHFGDVLLNKPGFGTRCMK
SEPLEKYPCSNATTDWEMTFIPLNVTNLLMKQNWTENNPSPVCQCSTQEKLTMLPQCPAG
AGGLSPPQRLQPTTDIVLDLTNRNISDYLVKTYPTLIRTSLKSKYWVNEQRYGGISFGGQ
LPVLDLNTEYVAEVFMHLGRMLNVTGGNYSKTVLRELQPFLKYMETEYNVKVWYNNKGWH
AMVSFLNVANNAILRANLPSGADPAEYGITTINHPLNLTKEQLSEVTVLSTSVDAVVAIC
VIFAMSFIPASFVLYLIQERVTKAKHLQFVSGVSPTVYWISNFFWDMLNYSVSTAMVIGI
FICFDKKAYTSPTNLPALVALLLLYGWSVTPLMYPASYLFSVPSTAYVSLSCINLFIGIN
SSAVTFILELFENDRSLLKLNKMLKNVLIIFPHFCLGRGLIDLAMNQAVTDVYARFGEDY
VVDPFHWNFIGKNIFAMAVEGIVYFALNILIQHRFFLTHWLSEGNISPIIDEDQNVAEER
ERMNKGGSKNDILKIKDLSKTYIGRSRPAVDRICVGVPPGECFGLLGVNGAGKTTTFKML
TGDTDVTSGEASVVGYSILTDILEIHQNMGYCPQFDAIDDLLTGREHLQLYARLRGVPGD
EVNRVAEWGIQKLGLLDYAERCAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPHS
RRFLWNSIMSVIRDGRAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGDGY
VVTMKIKAAKPGAPPDLKSAESFIEANFPGCLQREKHYNTLQYQIPSSSLAKIFQLVVSN
KDKLKIEDYSVSQTTLDQVFVNFAKQQTGEDEDLTLHPRAAGARRDIKVSPVNTTAYSS
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atggggaccagcagtcagatctctctgctgctgtggaaaaactggaccctgcgaaaaaga
caaaagcttcggtttattgtagagcttttatggccactgaccctgtttgttgtcttggtt
tggttgagaaaggcgaacccgctatatcagcaacatgaatgtcattttcccaacaaggcc
atgccatctgcaggagtcttgccctggttacagggaatgttctgtaacgccaacaacccc
tgcttccaacacacaacgcatggagaatcagctggtgtcgtctcgaactacaacaactcc
attttggccaggttctatgccgattcacaagaactgctgttctcaaagccagaattccaa
cagctagaaagggtctgggaagaactgggtgtcatgtctgatttcatggacacaatcaga
accaaccccgctagaatttcaggtcgaggggtcaaaattgaagacattctgaaggacgat
gaaactctcactgggtttttgttaagggactgtagattctctgactctgtcgttactcag
ctaattaaggcccaagtgcgcatcgaacagtttgcattcggggtccctgacttgactctg
aaggacattgcctgcagccagaccctgctggagcgtttcatcatcttcaccagccgacgt
ggaatgcatgcagtgcgcaacgccatgtgcgtcctgagtcagcagagactgcagaagatt
gaggacgttctctatgcaaacattgacttctttaagctctttcacattcttccttcagtg
ttggataatcactcctctggtgtggacctacggttctggggccaagtattgtcaaatgtt
tttgttttattacaagagctaatcaagagaaacagttttaacgatctgcttcaggtccta
tacccacttttccaagatggcggcccatcttccttcacacagctgatgaactcggtctct
aacctgttctgtgggtaccccgagggagaaggctccagagtgttctccttcaactggtat
gaggacaataattacaaggctttcctgggaatagacggctccaagaagcagcccaattac
gtctatgacaaaacgaccagcctattctgcaattcactgatccagaacctagagtctaac
ccaattaccaaaatagcctggaattccatgaaacccctgctgatgggaaagatcctgtat
gctcctgactctcctgctgtgcggcagatattaaaaaatgctaacaccacctttgaggag
ctggagagactgaggaacatggggctggcctgggaagaagtgggtcctcaagtgtggaac
ttctttcagagcagtgtacaaatgaatatgatccgagatacaattaaaaaccctacagtg
accggtttcattgacagacatcttgaagatacagaattttcatccaaagatattcttaac
tttctctacaatggacccccgagcagtcgaccagaagacatgctggactttgattggaga
aacatctttaatgtgactgaccaggtcatccgcctctttaaccaatacgcagagtgtctg
aatctggataagtttgtaggccattctgacgaagtccagttgacccaccaagctctatat
ctcctacaagaaaacaagttttgggctggaattgtcttccttgacatgttcccttggacc
aacaagctgccaacgcatgtaaaattcaagatccgcatggacattgatgttgtggagcga
accaataaaatcaaagacagatactgggaccctggcccaagggcagatcccctggatgac
ctgcgctacatctggggagggtttgcatacctccaggacataattgaacatggcattatc
aggagtcacacgaataaggacgtgccgctggggctctatttacagcaaatgccatatcca
tgctatgtagatgacctcttcatgctgacactcaaccgatgcttccccatgtttatggtg
ctggcctggatctactctgtctccatgatcgtcaagagcatcgtgttggagaaggagttg
cgcctcaaggaaacactaaaggtcatgggcgtctctaatggtgtgatctggtacacctgg
ttcatcgacagcttcctaatgatggccaccagcacaggcatcctgacctttgtcatcatg
gaagggaatgtactgcactacagcaatcctgccatcgttttcctgttcttgctgacgttc
accgtggcaaccataatgcagtgtttcttgatgagtgtcttcttcaataaggccaacctg
gcagcggcctgcagcggcatcatctacttcaccctttacctgccacacatcctgtgcttt
gcctggcaggaccgcatcaccaagaacatgaagatattggtgagtttgctgtctccagtt
gcatttggcttcggtacagaatatttatcccgctatgaagagcagggtcttgggctgcag
tgggacaatatctgcaccagtccattagagggcgacgacttcaatttcttctgctccatc
aggatgatggtttttgatgcttttttttatggtgccttggcatggtaccttgataatgtg
ttcccaggtcagtatggtatagcacggccttggtattttccactccagcattcatactgg
gcaggacctgagccctctctgcctgagaaaccagcccccacagaagataaaggagagatc
aaggatggaaaagaggaagagaagagccagaagtcttcagagaagccggtgactgagaac
aaaaccgagagcaaagagcctgagaagaaaccatgcaaacacaaagagaagcaggaaaag
gaagagaaggagaaggaagagatgctaaagaaagaagctgaggcagagaaaaaggaggct
gaaactattctaggtaaccctttccttgaggctgagccagcaggcctggtggttggtgtg
gtggtccagaacctggtgaaggcttttgatggctgcagcagacctgcggtggacgggctg
aacataaccttctacgaagggcagatcacttctttcctgggacacaatggagctggaaaa
acaacaaccatgtcggtcctcactggtttgtaccctccaacctctggcactgccatcatc
aaagggaaggacatccggaccgacattgacaccattcgacagtcattgggcatgtgccca
cagcacaacatcctcttccaccacctaacagtagctgaacacattctgttttatgcccaa
ctgaaagggaagccgaaggcagaagctgagaaggaggtggaggaaatgttagaagacatt
ggcctccctcacaagcagaatgaagaggcacagaacctgtcaggtggcatgcagaggaag
ttatctgtagccatggcctttgtcggaggagcaaaggtggtcattttggacgaacccact
tctggagtagatccttattcaaggagatccatctgggatctgctactcaagtaccgctca
ggcaggaccatcatcctgtccacacaccacatggatgaggctgacctccttggggaccgg
gtggccatcatctccaaggggaagctgctctgctgcggctcccccctgttcctcaagaac
tgcttcggcatcggcttctacctcaccctggtgcgcaggatgagatgcgtcaagcaagac
aagaagaaggagagtgaatgtggctgtaaagcggattgctcatgctcgtgctctacttgt
accaaattcaaggaagaatgtcatacccagacccagacccaaacccacaccttcgaacag
gagatggatggtgacatagagagtataaccagcctgattcaccaccacgttccggaggcg
aaactgatcgagatgattggtcaggaggtgacgtatttgctgcccaataaagacttcaag
caccgggcctatgctagtctgtttcgggagctggaggagacactgggtgacatgggactc
agcagtttcgggatctctgatacctcacttgaagagatttttcttaaggttactgctgat
gctgaaacagccacaggcgtggggaacccagaagagtggatgttgcagcacaggaaatta
ggaaatgggttcagtgcagagaatgccgaggtgaagcatttggcttcagccaatgggcag
agggcccctgagaactctcctaatgatgcgagtgatgggaaaggctctcagcagatcaaa
ggtgcaggactggtctttctgcagttcaaagcccttctgataaagaggttgtaccatgcc
acccgcagccagaaggatttccttgcacagattgtcctgcctgcaaattttgttctcttg
gctctgatttttacccttattatccctccttttggggaatatcccagcctatctctgcac
ccatggatgtatggcaagcagttcaccttctttagcaacgagcagcctgaaagtgagcca
atgaagcattttggtgatgttttgttaaacaaacctggatttgggacacgctgcatgaag
agcgaaccgttagagaaatacccttgtagtaatgccaccactgactgggagatgacattt
atccctctaaatgttacaaaccttctgatgaaacaaaactggactgagaacaatccttcc
ccagtctgtcagtgcagcacccaggagaagttgaccatgctcccacaatgccctgcagga
gctggggggctgtccccaccacagagacttcaaccaaccacagacattgtactagacctc
accaataggaacatatctgattacctcgtaaaaacatacccaacactgatcagaacaagt
ttaaagagcaaatattgggtcaatgagcaaagatatggagggatctcttttggaggacag
cttccagtcctcgacctcaacacggagtatgtagctgaagtcttcatgcacctgggacgc
atgcttaatgttactgggggtaactactccaagacagtcttaagggaattacaacctttt
cttaaatatatggaaactgaatataatgtgaaggtatggtacaacaataagggctggcat
gcgatggtgtccttcttgaacgttgccaacaacgcgattctcagggcgaatttaccaagt
ggagcagatccagcagagtatggaatcactaccatcaaccatccattgaaccttaccaaa
gagcagctctctgaggtcactgtgctgtctacctctgtggatgccgtggtggcaatctgt
gtgatcttcgccatgtcttttatccctgcgagttttgtcctctacctgattcaagagagg
gtcaccaaagccaaacacttgcagtttgtgagcggtgtgagcccaacagtttattggata
tctaacttcttctgggatatgttgaattattcagtgagtactgctatggtcattgggata
ttcatctgctttgacaagaaagcatacacttcaccaaccaatcttccagcccttgtagca
ttactgctcttgtatggctggtctgtcactccgttgatgtacccggcttcctatctgttc
agtgtgcccagcaccgcctatgtgtccctgtcctgcatcaacttattcattggcatcaac
agcagtgctgtcacttttattctggagctctttgaaaatgaccggtctctgttgaagtta
aacaaaatgttgaaaaacgtcctgataatattcccgcatttctgtctggggcgagggttg
attgatttggctatgaaccaagctgtgactgatgtgtatgccagatttggtgaagactat
gtggttgacccttttcactggaattttattggaaagaatatttttgccatggcagttgaa
ggcattgtatattttgccctgaatatcttgatccagcatcgcttcttccttactcactgg
ctatctgagggaaatatatctcctatcattgatgaagaccagaatgttgcagaagagagg
gagagaatgaacaaaggaggaagcaagaatgacattctgaaaatcaaagacttgtcaaag
acctatataggcagaagcagaccagctgtagacagaatttgtgttggggtccctccagga
gagtgctttggcctgctgggagtaaatggtgctggaaagacaaccactttcaaaatgctt
actggagacactgatgttacttctggagaggcctctgtagttgggtacagcatcctgact
gacatccttgaaatacatcagaacatgggatactgccctcagtttgatgccatcgatgat
ctgctgacaggacgtgagcacctccagctgtatgctcgtcttcgcggggtcccaggagat
gaagtcaacagggtggcagagtggggcatccagaagctgggtctccttgactatgctgaa
cgctgtgctgggacgtacagcggaggaaacaaacgcaaactctccactgctattgctctg
ataggctgtcctcccctagttctcctggatgagcccacgactggaatggacccacactcc
cgacggttcttgtggaattccattatgagtgtcattcgggatgggagagctgtggtgctt
acatcacacagtatggaagaatgtgaagccctttgcacccgtctggctataatggtgaat
ggaacattcaagtgtctagggactatccagcatctcaaatacaaatttggggacggttac
gttgttaccatgaaaataaaggctgctaagcctggagctcctccggacctgaaatcagct
gaaagctttatagaggcaaactttcctggctgccttcaaagagagaaacactacaacaca
ttacagtatcagatcccatcctcgtccctggccaagatcttccagcttgttgtgtccaac
aaggataaactcaagattgaggattactcggtctcacagaccacgctcgaccaggtgttt
gtgaactttgccaagcagcagacaggtgaggatgaggatcttactctgcatcccagagct
gctggggcgaggagggacataaaggtatctccagtcaacactactgcatattcatcatga
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integrated database retrieval system
