Polyodon spathula (Mississippi paddlefish): 121326500
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Entry
121326500 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121326500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121326500
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121326500
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121326500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
121326500
NCBI-ProteinID:
XP_041125735
LinkDB
All DBs
Position
14:complement(31985834..32031009)
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AA seq
2057 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDAVGGRLHSEQTKHKANSPPENRRSFSKTSKVQ
SNTASGQPRGHSSKRSSISLSASLQQQEDPDTASTSERHKTGQPKADSSRGVKRNSSPEF
NSTYSSSPAKKPKALQSTESSSEAKRVPAKSKKRQLALDQQPKPEQSASTSKAPNRKSGA
TGGSPTQKRKKIDNSSNLKSGAGSHSTRAEERSAKPTKLASKSATSAKAGCSTVTDSSSS
ASTSSSSSTAVPQGARVKQGKDQNKARRSRSASSPSPRRSSREKEQNKTAGSSKFEWPRF
SPKVTLPKPKLSLPGSSKSETSKPGPSGLQAKLASELAGLRKSTKKRSESPPAELPSLRR
STRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADSDNQDGANSSAARTDEAPQGASAS
SSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGASS
KAQQLLQGLQATGDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNFD
IMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQIIQFIDVAEQALTALEMLSRRHSKA
ILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLTQRLTHQDK
KSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNIQQLLVVTPPILSSGMFIMVVRMFS
LMCSNCPSLAVQLMQQNIAETLRFLLCGASNGSCQEQIDLVPRSPQELYELTSLICELMP
CLPREGIFAVDTMLKKGNTQNTDGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEISL
STLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANPNTSGHLEVKKEDARAQLMKEDPE
LAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVSSHIAS
MLSSQDLKIVVGALQMAEILMQKLPDVFGVYFRREGVMHQVKNLAESETVLTSPPKACTS
GTGSICTTTISTATTTAAANATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRGP
RRPKYSPPRDDDKVDHQAKSPTTTQSPKSSFLASLNPKTWGKLSTQTNSTNSELPRTAGV
SGLARVPPKDSVSNNRDKIRAWIKEQACKFVERHFSSENVDTSNPALNVLQRLCTATEQL
SLQVDGGTECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSDKDTVNRDVRLKRFL
HVFFGCPPPGLEPLGRLEPLENGPLMALVHKMNNCLSQMEQFPVKVHDFPSGNGTGSRGS
QALKFFNTHQLKCQLQRHPDCSTVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDE
DSDDDGSDDEIDESLAAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQFSIQAEEERE
STDDESNPLGRAGIWTKTHTIWYKPVRDDEDSNKDVVGGKRGRAQTAPTKTSPRNAKKHD
ELWHDGVCPTVANPLENYLISVPPENITFEDPSLDVILLLRVLQSVSRYWFYLYDNATCK
EIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPPWLTELGKTCPFFFPFDTRQMLFYVTA
FDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQDLGSSRAM
LEIQYENEVGTGLGPTLEFYALVSQELQRSDLGLWRGEEVALSNPKGSQEGTKYVFNSRG
LFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHESSVSS
HDLINIDPGVAKSIHHLEDIIRQKKKLEQDRTQSRESLQQSLESLNMNGCSVEDLGLDFT
LPGFPNIELKKGGKDVPVNIHNLEEYLRLVVFWTLNEGVSRQFESFREGFESVFPLQHLQ
YFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVKFLFEILSSFDAEHQRLFL
QFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIDIMR
QKLLIAAREGQQSFHLS
NT seq
6174 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccagccacaagacgacgcagttggaggaaggttacactctgagcagacaaaa
cataaagcaaattccccacctgagaatagaagatcattttctaagacatcaaaagtgcag
tccaacacagcttctggacaacccagaggacacagctctaaaagaagcagcatttcatta
tcagcatcattacagcagcaagaggacccagatacagctagtacttcagagagacacaag
acaggacagcctaaggctgacagctcccgaggagttaaacgcaattcgagtcctgaattc
aacagcacatactcttccagcccagccaagaagcccaaagcacttcagtccactgaaagc
tcttctgaggcaaagagagtcccagctaaatctaagaaaagacagttggcactagaccag
cagccaaaacctgagcagtcggcatcgacaagtaaagcccctaacagaaagagtggagct
acggggggctccccaactcagaaaagaaaaaaaatagataattcctctaatttaaaaagt
ggtgctgggtctcattcaacccgtgctgaagagaggtctgcaaaacccaccaagctggct
tcaaaatcagcaacctcagccaaagctgggtgtagcactgtcacggattcttcctcttca
gcctctacatcctcttcctcttccacagccgtacctcagggcgcccgcgtcaaacaaggg
aaagaccagaacaaggcaaggcgttcccgctcggcctccagccccagcccccgtcggagc
agccgcgaaaaggagcagaacaaaaccgctggctcttcaaagtttgagtggccccgcttt
agccctaaagtcaccctgccaaaaccaaaactgtctctaccagggtcttccaagtcggag
acttcaaaacctgggccttctggacttcaggccaaactagcaagtgagttagcaggcttg
agaaagtccacaaagaaacgcagcgagtccccaccagcagagctccccagtttacggagg
agcacacgccaaaagaccacgggctcctgtgctagtaccagtcggcgaggctctggcctg
ggcaaacgaggtgcagctgaagctcgccgacaggagaaaatggcagattctgacaaccag
gatggtgccaactcttcagctgcacgcacagatgaggcgccccaaggagcatcagcttct
agttcagtggctggggctgtaggaatgaccacctcaggagagagtgagtctgatgactca
gaaatgggtagactacaagctctcttagaggctcggggccttcctcctcacctttttggt
ccccttggtcctcgaatgtcacagcttttccacaggacgattggaagcggggcgagctcc
aaggcccagcagctccttcagggtctccaggccactggtgacgagtctcaacaacttcag
gctgtaattgagatgtgtcaattactggtcatgggaaatgaggaaacactggggggtttt
cctgttaagagtgttgtaccagcattgattaccctgttacaaatggagcacaattttgac
attatgaaccatgcatcaagagctttgacatacatgatggaagcacttcccaggtcatcg
gctgtggtggttgatgctattccagtctttctggaaaagttgcagattatccagtttatt
gatgtggcagaacaggccctgacagctctggaaatgctgtcacgtagacacagcaaggca
attctacaggctggaggtttggcagactgtttgctgtatctggagtttttcagcatcaac
gctcagagaaatgccctggctattgctgccaactgctgccagagcatcaccccagatgag
ttccactttgtttcagattcgctgcccttactcacccagaggctaacccaccaggacaaa
aaatcggttgaaagtacttgcctctgttttgcccggcttgtggacaattttcagcatgag
gagaacttgctgcagcaggttgcatctaaggatttgttaacaaatatccagcagctctta
gttgtgacgcctcccatcttgagctcaggcatgtttattatggtggttcgcatgttctct
ctaatgtgttccaactgccccagtctggccgtacaactcatgcaacagaatatagcagaa
acacttcgtttccttctgtgtggagcttcaaatggcagttgccaagaacagattgatctt
gtaccacgcagcccccaggaactctatgagcttacttctcttatctgtgagcttatgccc
tgcctgcccagagagggaatctttgcagtcgatacaatgcttaaaaagggaaacactcag
aacacagatggcgcaatctggcagtggcgagatgacagaggcctgtggcatccatataac
agaattgacagtcggataattgagacagctcatcagaatggtgaagatgagattagctta
tccactcttggacgtgtttatactattgattttaattctatgcagcagatcaatgaggat
acagggacggctcgagcaattcagagaaaacccaaccctttagccaaccccaacaccagt
ggtcatttggaagtgaagaaggaagatgccagggcacagctaatgaaggaagaccccgaa
ctggcaaaatgctttataaaaactttgtttggtgtgctgtatgaagtgtacagttcttca
gctggacctgcagtcagacacaagtgccttagagcaattcttaggattatttattttgct
gatgctgaacttctaaaagatgtgcttaaaaatcatgctgtatctagtcacattgcttcc
atgctgtccagtcaggatctgaagattgtagttggagctctacaaatggcagagatttta
atgcagaagttacccgacgtatttggtgtttatttccgaagagaaggtgtgatgcaccag
gtgaaaaatctggctgaatcggagactgtccttactagccctcccaaggcttgcactagt
gggactggaagtatatgtacaactacaattagtacagcaactaccactgctgcagcaaat
gcaaccccagacctaggctctcccagcttccagcacagcatggatgattctctggatctg
agtccccagggccgattaagtgatgtcctaaagagaaaacggctgccaaagcgtggccca
agaaggccaaagtattctcctccaagagacgatgacaaagttgaccatcaagctaagagt
cctactaccacacagtctcccaaatcttccttcttggcaagtttgaaccctaaaacctgg
ggaaaattaagcactcaaacaaacagcactaattctgaactgccacgcacagctggagtc
agtggtctggcacgggttcctccaaaagactctgtatccaataacagggataagattagg
gcttggataaaagagcaggcctgtaagtttgtggaacgccacttcagctctgagaatgtg
gatacaagcaatcctgcactgaatgtactacagagactttgcactgctactgaacaactc
agtctacaggtggatggtggaacggagtgccttgtagaaatcaggagtatagtctcagag
tcagatgtgtcctcatttgaaatccagcacagtggatttgtaaaacaactgctgctttat
ttgacctccaaaagtgacaaagacactgtgaaccgtgatgttagattaaagagattcctg
catgtgttctttggttgtccgcccccaggactagaacctcttggacgattagaaccttta
gaaaatggaccactaatggctcttgtgcataaaatgaacaactgtcttagccagatggaa
cagttccctgttaaagtgcatgacttccccagtgggaatggaacaggaagcagaggatcc
caggccttgaaattcttcaacacacatcagctaaaatgccagcttcagagacatccagac
tgtagtaccgtaaaacagtggaagggtggcccagtgaaaatagatccgttggctttggta
caggctattgaaagataccttgttgtcagagggtatggaagaattcgagaggaagatgaa
gacagtgatgatgatgggtcagatgacgaaattgacgaatctctggctgcacagtttttg
aattcaggaaacgtgaggcacaggctacaattttacattggagaccatttactaccatac
aacatgacggtttaccaggcagttagacagtttagtatacaggctgaagaggagcgtgag
tccacagacgatgaaagcaaccccttaggaagggctggaatctggacaaagacccataca
atatggtacaagccagtgagagatgatgaagatagcaataaggatgtggttggtggaaag
agaggacgtgcgcaaaccgcaccaactaaaacctcccctcgaaatgcaaaaaagcatgat
gaactgtggcatgatggggtgtgtcctacagtggcaaacccattagaaaattacctaatt
tcagtcccacctgaaaacataacatttgaggacccttctcttgatgtgatactacttcta
agagttcttcagtcagtaagcagatactggttttatctatatgataatgccacctgcaaa
gagattattcctaccagtgagtttatcaacagcaaacttactgcaaaagctaaccggcaa
cttcaagatcccttggttatcatgactggtaacatcccaccatggttaacagagcttgga
aaaacctgcccatttttcttcccttttgatacccgacaaatgctgttttatgtgacagcc
tttgatcgagatcgggccatgcagcggttactggacacaaatccagaaattaatcagtct
gattcccaagacagcagagttgcaccgcgattagacaggaagaagcgcactataaaccgt
gaagagttattgaaacaagctgaatcagtaatgcaagatcttggcagctcaagagcaatg
ttggaaatacagtacgaaaatgaagttggaactggcctgggacccacattggagttttat
gcacttgtatctcaggaactgcagagatctgaccttggcttatggaggggagaggaagtt
gccttgtcaaacccaaaaggaagccaggaagggaccaagtacgtcttcaattcacggggt
ctgtttgctgttccttttggaaggacgactaaaccggctcatatagccaagattaagatg
aagttccgttttctgggaaaattaatggccaaggccatcatggatttcagattgttggac
cttcctcttgggctgccattttacaagtggatgctgcgtcatgagtcctcagtcagctcc
catgacctgattaacattgatcctggcgtagccaaatcaattcatcaccttgaggacatc
atcaggcagaaaaagaaactggaacaggataggacgcagtcaagggaatctctgcagcag
tctttggaaagtctgaacatgaacggttgctccgtggaagacttgggtcttgacttcact
ttgccaggttttcctaacattgagttgaagaaaggaggcaaggatgttccagtaaacatc
cacaatctggaagagtatctaaggttggttgtgttctggaccttgaatgaaggtgtttcc
aggcagtttgagtcattcagggaaggattcgagtcagtcttccctctgcagcacctgcag
tatttctatcctgaagagctggatcaattgctttgcggtagcaagtcggagacctgggat
gttaaaacattaatggagtgctgtagaccagaccatgggtatacacatgacagtcgtgcc
gtcaagttcctgtttgaaatactcagcagttttgatgcagagcaccaaaggctgtttcta
cagtttgttactggtagtccaagactacctgtgggaggcttcagaagtttgaacccccct
ctgacaattgtccgcaagacatttgagtctacggagaatcctgatgattttctgccctcc
gtaatgacctgtgtcaactatctcaagttaccagactactctagtattgatataatgcgt
caaaaactgttgatagctgctagagaggggcagcagtcattccatctctcctga
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