Polyodon spathula (Mississippi paddlefish): 121326659
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Entry
121326659 CDS
T07273
Name
(RefSeq) autophagy-related protein 16-1-like isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04136
Autophagy - other
pspa04140
Autophagy - animal
pspa04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121326659
04136 Autophagy - other
121326659
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121326659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121326659
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121326659
Membrane trafficking [BR:
pspa04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
121326659
Others
Specific organelles associated proteins
Auto phagosome
121326659
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121326659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT122_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_DCAF12
eIF2A
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_HPS5
Ge1_WD40
Beta-prop_Vps41
PUMA_CC
KASH_CCD
ADIP
PRKG1_interact
Lipoprotein_6
APEH_N
PALB2_WD40
FlaC_arch
hemP
DUF7310
V_ATPase_I
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
121326659
NCBI-ProteinID:
XP_041125938
LinkDB
All DBs
Position
14:complement(23885970..23939004)
Genome browser
AA seq
622 aa
AA seq
DB search
MSGAGCRPECTWKRHIAEQLKQRDQVQRQAFEEIIHQYNRLLEKSDLQTVLSERLQTDKF
DSHSRHDLSPGHDGVRSEALLQEMAEIRIKHQEELTELHKKRGELAQNVIQLNNQMQQKD
KEIQANEAKMAEFQQRISELESECRELHSNLQDLEMANQTLKDEYDALQITFSALEEKLR
RTTEDNQELVSRWMAEKAQEANQLNAENEKDCRRRQAKLQKELADAAKEPLQLDLDDDIE
VLSDDTAEPGGETSPGKAITRTPSKRTSQPPGGLLDSITNIFGLSESPILGHHTPDITRR
RSVNSYGSSPESAEVHTGVCSEVRVPTTALHVFDAHDGEVNAVRFSPGSRLLATGGMDRR
VKLWEIVSGRCELKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDFRLRHTLT
GHSGKVLSARFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSG
HFDKKVRYWDIRAESIVRELELFGRVTSLDLNPDKTELLTCSRDDLLKIIDLRTNTVRQT
FSVQGFKCGSDWTRVMFSPDGSYIAAGSADGTLYVWNVLTGKVENALGKHHSSSINAVAW
SPSGAHVVSVEKGSKAVLWSDL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtctggggcggggtgccggcctgaatgcacctggaagagacacatagcagagcagctg
aagcaaagagaccaggttcagagacaggcttttgaggagattatccaccaatataataga
ctgctggagaagtctgacctgcaaactgttctttcagagaggcttcagactgataaattt
gacagccacagcagacatgacctcagcccaggtcatgatggagtgcggagtgaagccctg
ttacaggagatggctgagattaggatcaaacaccaagaggagctgacagagctgcacaaa
aagcgtggggagctggcccagaatgtcattcagttgaataaccaaatgcaacagaaagac
aaggagatccaggcaaatgaagcaaagatggcggagttccagcagcggatctccgagcta
gagagcgagtgcagagagttgcattcgaacctgcaggacctggagatggccaaccagacc
ctgaaggacgagtatgatgccctgcagatcactttcagcgctctggaggagaagctgcgg
cgcaccaccgaggacaaccaggagcttgtctcccgctggatggctgaaaaagcacaggag
gccaaccagctcaacgcagagaacgagaaggactgcaggagaagacaagccaagttgcag
aaggaactggctgatgcagcaaaggagcccttgcaattggacctggatgatgacattgag
gtcctgtccgacgatactgcggagcccgggggggagacatcgcctgggaaggccatcacc
cgcacacccagtaaacgcacctcccagccacccggaggccttctggactctatcactaat
atctttggcctctctgagtctccgattcttggacatcacactcctgatatcacaaggcgt
cgatctgtcaattcttatggcagctcccctgagagcgcagaggtgcacacaggagtatgt
tcggaggtccgtgtgcccactactgctctgcatgtctttgatgcccatgatggggaagtg
aatgcagtgagattcagtccaggctctcgtctcctggcaacagggggtatggaccggaga
gtgaaactatgggagattgtttcaggtcgttgtgaactgaaaggagctctcacaggcagc
aatgctggaatcaccagtatcgagtttgacagtgcgggctcctatttgcttgctgcctcc
aatgatttcgccagcaggatctggacagtggatgacttcagactgcgtcacactctgaca
gggcacagcgggaaggtgctgtccgctcgcttcctgttggataacgctcgcatcgtctca
ggcagccatgacaggacactcaaactctgggacctcaggagcaaagtctgtataaagact
gtgtttgcaggatcgagctgcaatgacattgtctgcactgagcagtgtgtcatgagtgga
cacttcgataagaaagtccgctactgggatatcagggcagaaagtattgtgcgtgagttg
gagctgtttgggagggtcacatctcttgacctaaatcctgacaaaacggagctgctcacc
tgctccagagatgacctgctgaaaatcattgacctgcggactaacacagtgcggcagaca
ttcagcgtgcaaggcttcaagtgtggctccgattggacacgagtgatgtttagccctgac
ggtagctacattgctgcaggttctgctgacggcactctgtatgtgtggaacgtgctgacg
gggaaagtggagaatgcgctaggaaaacaccacagctcctctatcaacgctgtggcctgg
tccccctccggagcccatgtggtcagtgttgagaagggcagcaaggcagtgctctggtct
gatctctga
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