KEGG   Polyodon spathula (Mississippi paddlefish): 121326818
Entry
121326818         CDS       T07273                                 
Name
(RefSeq) coatomer subunit beta'
  KO
K17302  coatomer subunit beta'
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pspa04131]
    121326818
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pspa04147]
    121326818
Membrane trafficking [BR:pspa04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    121326818
Exosome [BR:pspa04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   121326818
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_WDR35_TULP_N HEAT_GCN1
Other DBs
NCBI-GeneID: 121326818
NCBI-ProteinID: XP_041126277
LinkDB
Position
14:36922658..36931481
AA seq 927 aa
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHESQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWTCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIIKLG
REEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESSSVVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILKYLGEKVAAAQESNEGITEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYFVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKPQALAVSSDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNATMVNKLAEAAE
KDGKNNVAFMTYFLQGKLDHCLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRESLSKV
NQKAAESLADPTEYGNLFPGLKEAFVAEQFIKETSLGKLRPAAEYPLVTMNEERNVLEEA
KGYEPKGTVLSQENVPKVEMAEAAFPEPSFMIQAPAPKPGPTSTPTEPTPDKPEKTLNEE
FEEDLDNLDLEDIDTTDVNLDDDFLDD
NT seq 2784 nt   +upstreamnt  +downstreamnt
atgcctttgagactagatattaagcggaagctcacagctcggtctgaccgagtgaagagt
gtggacctgcacccaacagagccctggatgttagccagcctttataatggcagtgtctgt
gtgtggaaccatgaaagccagactcttgtgaagacatttgaggtgtgcgatttgccggta
agagcctccaaatttgtcgccagaaagaattgggtcatcactggagcggatgacatgcag
attcgagttttcaactacaacaccttggagagagttcacatgttcgaagcacactccgat
tatatccgatgcatagcagtgcatcccacacagccatacattctaaccagcagtgatgac
atgcttatcaagctttgggactgggagaaaaagtggacctgtagccaagtgtttgagggc
catacacattatgttatgcaaattgtcatcaaccccaaagacaacaaccagtttgccagt
gcctctctagacaggacaattaaggtgtggcagcttggctcatcctcgccaaacttcaca
ttagaaggtcatgaaaagggagtgaactgcattgattattacagtggaggtgacaaacct
tacctcatttcaggagctgatgatcgattagtgaaaatttgggactaccagaacaagacc
tgtgtgcaaacattagaaggacatgctcagaacgtatcatgtgtcagctttcatcctgag
ctccccatcatcatcaccggctcagaagacggcactgttcgtatctggcattcaagcaca
taccgcctggagagcacgctgaactatggcatggagagggtgtggtgtgtggccagccta
cggggttccaacaacgtggcactggggtacgatgaaggcagcattatcattaagcttggt
cgcgaggagcctgctatgtccatggatgctaatggaaagatcatttgggctaaacactct
gaggtccagcaggctaatctgaaagccatgggtgatgctgaaattaaggatggagagcgg
ctgcctttggctgtgaaagacatgggaagctgtgagatctacccacagacgatccagcac
aaccccaatggcagatttgttgtggtatgtggagatggggaatacatcatttatactgcc
atggcattgagaaacaagagcttcgggtctgcacaagagtttgtctgggcacacgattcc
tctgagtacgcaattagggaaagcagcagcgttgtgaagatctttaaaaacttcaaagaa
aagaagtctttcaaaccagattttggagcagaaggtatctatggcgggttcttgttggga
gtcagatctgttaatggtttggctttttatgattgggataacacagaactgatccgccga
attgaaatccagcctaaacatattttctggtccgactctggtgagctggtctgcattgct
acagaggagtcatttttcattctgaaatacctgggagagaaggtggcagcagcgcaggaa
tcaaatgagggcataactgaagacggcattgaggatgcctttgaggttcaaggcgaaatc
caggaaattgtcaagacggggttgtgggtcggagactgcttcatctacaccagctctgta
aaccggctgaattactttgttggtggagaaattgttaccattgctcacttggacaggact
atgtatcttttgggttatatccccaaagataaccggctatacctgggtgataaagagttg
aacattgtcagttattccctgctggtctctgtgctagaataccagactgcagtgatgagg
agagactttggtatggcagataaggttcttcctacaattccaaaagaacagaggaccaga
gtggcacactttctagaaaaacagggtttcaaaccgcaagcccttgcagtatcttcagat
ccggagcatcgctttgaactggctctgcagcttggggagctgaagatcgcatatcagctg
gcagttgaagcagaatcggagcaaaagtggaagcagctagccgagcttgccatcagtaag
tgtcagtttggccttgcccaggaatgccttcaccacgcgcaggactacggtggtcttctg
ttgctggccactgcctctggtaatgccaccatggtcaacaaacttgctgaggcggctgaa
aaggatggcaagaataacgttgcttttatgacctacttcttgcagggaaaactcgaccac
tgtctggaactgttgattcgtacaggacgtcttcctgaagctgcctttctcgctcgtacc
taccttccaagtcaggtgtcaagggttgtaaaactgtggcgagagagtctttccaaagtg
aaccagaaagctgcagagtctttggctgatcccactgaatatggaaacctgttcccaggg
ttgaaagaagcattcgtggcggaacagttcattaaggaaactagtcttggaaagttgaga
ccggctgcggaatacccactagttactatgaacgaagagagaaatgtattggaagaagca
aaaggttatgagccaaaaggaacagttctgtcacaggagaatgttccgaaggtggaaatg
gcagaagccgcatttccagaaccgtcgttcatgatacaagcccctgcacctaaacccggc
cccacatcaactcccacagaacccactccagacaaacctgaaaagactttgaatgaagaa
tttgaggaagacttggataacttggatctggaagacattgacacaacagacgtaaacctg
gatgatgatttcctagatgactaa

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