Polyodon spathula (Mississippi paddlefish): 121326856
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Entry
121326856 CDS
T07273
Name
(RefSeq) polypyrimidine tract-binding protein 2 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121326856
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121326856
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_occluded
RRM_8
RRM_PARP14_3
GlcNAc-1_reg
RRM_Nup35
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-GeneID:
121326856
NCBI-ProteinID:
XP_041126371
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All DBs
Position
14:10598804..10616189
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AA seq
554 aa
AA seq
DB search
MDGIVTDVAVGVKRGSDELLSSSLYNSPNSSMSGMVVTANGNDNKKLRVEDRMDCAPSRV
LHIRKLPNEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGSEEAAITMVNYYTAVTPH
VRNVPVFIQYSNHKELKTDSALNQRAQAVLQAVTAVQSASTPISGTAVSECALTPAQSPV
LRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPMNAQQAKLALDG
QNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAMDPSVTAAFNKDSSL
LGKNQGTPSGMVSPYSSGGAFSSSLSFGQTGGALSPLSAAAAAAAAAGRVALSGVSHSNS
GVLLVSNLNEEMVTPQSLFTLFGVYGDAQRVKILYNKKDSALIQMADGNQAQLAMSHLNG
QKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFTNSPLHRFKKPGSKNFQNIFPPSATL
HLSNIPQTITEEDLRTLFENSGGTVKAFKFFQDHKMALLQMSTVEEAIQALIDLHNYNLG
DNHHLRVSFSKSTI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtcactgatgttgcagttggtgtaaagagaggatcggatgagctattg
tctagcagtctgtacaacagccctaattctagtatgagtggtatggtggttactgctaat
ggcaatgataacaagaaattaagagtagaagacaggatggattgtgcaccctctcgtgtc
cttcacatcaggaagctgccaaatgaagtttcagagacggaagttattgccctaggctta
ccttttgggaaggtcaccaatattctaatgctaaaaggaaagaatcaggcattcttagag
cttggaagtgaagaagcagctattaccatggttaattattacactgctgtgacgcctcat
gttcgtaatgtgcctgtgttcatccagtattcgaatcacaaagaactaaagactgacagt
gccctcaatcagcgtgcacaggctgtccttcaagctgtgactgctgttcagtcagcaagt
acacccatatccgggacagcagttagtgagtgtgcattgacaccagcacagagcccagtg
ttgagaatcattattgacaacatgttctaccctgttacactagatgtccttcagcagatc
ttttccaagtttggaactgtcatgaagatcataacattcacaaagaacaaccagtttcaa
gctttgctgcagttcagtgacccaatgaatgcccagcaagccaaactggctctggacggt
cagaacatttacaatgcttgctgcacgctgcgtattgacttttctaaactggtaaatttg
aacgtgaagtacaacaacgacaagagtcgtgactacactcgccctgagctgcctgctggg
gatgggcagccagccatggacccctctgtgactgcagcatttaataaggattcgtctctg
cttggtaagaatcaaggtactccttctggaatggtgtcgccatattctagtgggggagca
ttttcttcttcactcagtttcggacagactggaggagctctcagtcctttgagtgctgca
gcagcagcagcggcggctgcaggtcgagtggcgctgtctggagtctctcattccaacagt
ggtgttctcctggtcagcaaccttaacgaggagatggttacgccccaaagtctgtttacc
ctcttcggtgtttatggggatgctcagcgcgtgaagatactgtacaataagaaagacagt
gcactcattcaaatggcagatgggaatcaagctcagcttgcaatgagtcatctgaatggt
caaaagatgtacggaaagataatacgagtgactttgtcgaaacatcaaaccgtacagcta
ccaagagagggacttgatgaccaagggttgacaaaggatttcactaactcgccattacat
cgattcaaaaagcctggatcaaagaactttcagaatatatttccaccttctgcaactctt
catctctcaaatatcccacaaaccataacagaggaagatcttagaacactgtttgaaaac
tctggtggcactgtgaaagctttcaagttttttcaagatcacaaaatggcacttcttcag
atgtctactgttgaggaagcaattcaagctttgattgaccttcacaattacaatctagga
gacaatcaccacctgagagtttccttctccaaatcaaccatttga
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