Polyodon spathula (Mississippi paddlefish): 121326861
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Entry
121326861 CDS
T07273
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04115
p53 signaling pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121326861 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
121326861 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121326861 (cop1)
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121326861 (cop1)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121326861 (cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121326861 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_EML
zf-RING_UBOX
Beta-prop_DCAF4
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
zf-RING_10
zf-rbx1
UvrD-helicase
WDR90_beta-prop_4th
zf_C2H2_10
Sina_RING
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
121326861
NCBI-ProteinID:
XP_041126379
LinkDB
All DBs
Position
14:complement(8653098..8679439)
Genome browser
AA seq
718 aa
AA seq
DB search
MSTSRQQQQNGGGVGSGPGTSSSSSSSSSGGGSSSSGSGSGNTSNGDGSGNAVSSRTLGT
GIGALAVPILGVPSSRNSAVSLGRPGSSSGSSSSSSRKRPLPTPLCNGLINSYEDKSNDF
VCPICFEMIEEAHMTKCGHSFCYKCIRQSLKDSNRCPKCNYIIDNVDQLYPNFLVNELIL
KQKQRLDEKRLKLDHPNGHRWHVFQDVLGTDQENLDLANVNFMLELLVQKKKQLEAESQA
AQLQILMEFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPGSDLDHNLDSTVP
QFEAPSPSHSSIIDSTEYSQPPGFSGGSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFS
NRMSRITDESRTTNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDC
DYFAIAGVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEG
TVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIE
AKANVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEI
VSASTDSQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSK
TLLTFKFDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccagccggcaacagcagcagaacggcggtggagtgggttcggggcctgggact
agcagcagcagcagcagcagcagcagcggcggcggtagtagtagtagcggcagcggcagc
ggtaacactagtaacggggacgggagtggaaacgcggtctcatcacggacactgggtact
gggattggggcattagcagtccctatactgggggttccctcttcccgcaatagcgcagtt
tctttggggagacctggctcgtcctcgggcagtagcagcagtagcagcagaaagcggccc
cttccgacacccctctgcaacggcctcatcaattcctacgaggacaagagcaacgatttc
gtgtgtccaatctgttttgagatgatcgaggaagctcatatgacaaaatgtggacatagt
ttttgttacaagtgtattcgacagagtctgaaagacagcaacagatgtccaaagtgtaac
tatattattgacaatgtggatcagctataccctaactttctagtgaatgaactaatcctc
aaacaaaagcagaggttggatgagaaacgactgaaactggatcatccgaatggacaccga
tggcatgttttccaagatgtgcttggtacagatcaagagaacctggacctggccaatgtt
aacttcatgctggagcttctagtacagaaaaagaaacagcttgaggcggagtcacaagca
gcccagctccagattttaatggaatttctaaaggaagccagaagaaacaagagagagcaa
ctggagcagttgcagaaggagctgaactttttggaggaagatatcaaacgtgttgaggaa
atgagtgggttgtattctcctggtagtgatttagaccataatctggatagcactgttcct
cagtttgaagccccttctccctcacacagcagtattatagattctacagagtacagccaa
ccaccagggttcagtggaggctcacagggaaagaggcagacctggtacaacagtacactt
gcatctcggcggaaaagactcacagcacactttgaggatttagaacagtgttacttttct
aaccggatgtctcggataactgatgaaagcaggaccaccaaccagttggatgattttatg
gagtgtctttctaaattcacacgctataattcagtcagacctctagccacactatcctat
gccagtgatctctacaatggctccagtattgtctccagtattgaatttgaccgcgactgt
gattattttgcaattgccggtgttacaaagaaaattaaagtatttgagtatggaaccgtg
atccaggatgcagtggacattcattatcctgtcaatgagatgacctgtaactccaaaatc
agctgtatcagctggagtagctaccacaagaacctgttagccagcagtgactatgaaggc
acagttatcctgtgggatggcttcactggacagagatcaaaggtctaccaggaacatgag
aaaagatgctggagtgtcgacttcaatctaatggaccctaagctcttggcttcaggctct
gacgatgcaaaagtgaaattgtggtctacaaacctggacaactcggtagctagcattgag
gcaaaggcaaacgtgtgctgtgtaaaattcagcccaacatcacgttaccaccttgctttt
ggctgtgcagatcactgtgtccactactatgatcttcgaaacacgaagcagcctatcatg
gtattcaagggccaccggaaggcagtctcatatgccaagtttgtcaatggagaggaaatt
gtgtctgcatctacagacagccagctgaagctatggaacgtgaacaagccccactgcctg
cgttcatttaagggtcacattaacgagaaaaactttgttggtctggcatccaatggcgat
tatgttgcatgcggaagtgaaaacaactccctttacctgtattataagggcctctcaaag
acactgttgacgtttaaatttgatacggtgaaaagtgtgctggataaagacaaaaaggag
gatgacaccaatgaatttgtcagtgctgtgtgctggagggcattgcctgatggggagtcc
aatgtgttgatcgcagccaacagccaaggcacaatcaaggtactggaacttgtatga
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