Polyodon spathula (Mississippi paddlefish): 121326936
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Entry
121326936 CDS
T07273
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121326936
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121326936
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121326936
NCBI-ProteinID:
XP_041126531
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Position
14:complement(30901434..30902772)
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AA seq
315 aa
AA seq
DB search
MYSMMETELKPPAPQPHSGGTGNSNASANNQKNSPDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD
KYTLPGGLLAPGGNAMNSGVGVGAGMGAGVNQRMDSYAHMNGWANGGYGMMQEQLGYPQH
PGLNAHSAAQMQPMHRYDMSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPAMTLGSMGSV
VKSESSSSPPVVTSSSHSRAPQCQPGDLRDMISMYLPGAEVPEPTGQSRLHMSQHYQSAP
VPGTTINGTLPLSHM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatggaaaccgagctcaaaccccctgcccctcagccacattctgggggc
acggggaactcgaacgcttctgcaaacaaccagaaaaacagcccggaccgagtgaagaga
cctatgaacgcatttatggtgtggtcgagagggcaaaggagaaaaatggcgcaggagaac
ccgaaaatgcacaattcagaaatcagcaaaagactcggtgccgaatggaaacttttatcc
gaatctgagaagcgaccttttatcgatgaagccaagcgtctcagagctctccacatgaag
gaacacccggattacaaatacagaccgaggcggaaaaccaagactctgatgaagaaggac
aagtacactctgccaggtggacttctcgctccgggcggcaatgcgatgaacagcggggta
ggtgtaggggctggcatgggtgccggggtcaatcaaaggatggacagttatgcacatatg
aatggctgggccaacggaggctatggtatgatgcaggagcagctgggctacccgcagcac
ccgggtttaaatgctcacagcgctgcacagatgcagcccatgcaccgctatgacatgagc
gcccttcagtacaattctatgaccagttcacagacctacatgaacgggtcgcctacctac
agcatgtcatactcccagcagggcacccctgcaatgactctgggctccatgggttcggtg
gtcaagtcagaatccagctcaagtccaccggttgtcacatcatcctctcattcgagggct
ccccagtgccagcccggggaccttcgggacatgatcagcatgtatctgcccggagctgaa
gtaccagaaccaactggccaaagcagacttcacatgtcacaacattaccagagcgcacct
gtacccggtacaaccattaatggcacactccctctatcacatatgtaa
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