Polyodon spathula (Mississippi paddlefish): 121327023
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Entry
121327023 CDS
T07273
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121327023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121327023
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
121327023
Prokaryotic type
Archaeal type
TFB
121327023
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
RB_B
Sigma70_r4
BRF2-like_C_cyclin_rpt
Motif
Other DBs
NCBI-GeneID:
121327023
NCBI-ProteinID:
XP_041126715
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All DBs
Position
14:complement(4572176..4580298)
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AA seq
318 aa
AA seq
DB search
MAAAIRGDALALPKVQCPSHPDALLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND
KAAKDPSRVGDAQNPLLNGGDLSTVISRGTGSASFDEFGNSKYQNHRTMSSSDRAMLNAF
KEITNMSDRINLPTNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMGATYIARK
AVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDTAGVADVTIRQSYRLIYPRAAD
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgctatccgtggtgatgctctagcccttcccaaggtgcaatgtccaagccat
ccagatgcacttttggttgaagattaccgagctggagatatgatctgcccagaatgtgga
ctggtggttggtgacagagttattgatgttggatcagagtggagaacatttagcaacgac
aaagcagcgaaagatccctctcgagttggtgatgcccaaaacccacttctaaatggggga
gatttgagtacagtgatcagcaggggaacaggttcagcaagttttgatgagtttggcaac
tcaaagtaccagaaccacaggactatgagcagctctgacagagcgatgttaaatgcattt
aaggaaatcaccaacatgtcggacagaataaacctccccacaaatatcatagatcgaaca
aataacttatttaagcaagtgtacgagcagaagagcctgaagggaagaagtaatgatgca
attgcttctgcttgcctttatattgcctgcagacaagagggtgttccgcggacttttaaa
gaaatttgtgcagtctccagaatttctaaaaaagaaattggccgatgtttcaagctgatc
ctgaaggcacttgagacgagcgtagacttgataacaactggagacttcatgtccagattc
tgctccaacctggggttgcccaagcaagtgcaaatgggtgctacctatattgcaagaaag
gctgttgagctcgacctggtacctggcaggagccctatctctgttgcagcggcagccatc
tacatggcatcacaggcctctgcagagaagaagactcagaaagaaatcggagacactgca
ggtgttgctgatgtcacaatcaggcagtcgtatagactcatctatcctcgagctgcagat
ctctttccaccagactttaaatttgacacccctgttgataaacttccccagctgtaa
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