Polyodon spathula (Mississippi paddlefish): 121327028
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Entry
121327028 CDS
T07273
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121327028
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121327028
09142 Cell motility
04820 Cytoskeleton in muscle cells
121327028
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121327028
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121327028
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121327028
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121327028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121327028
NCBI-ProteinID:
XP_041126724
LinkDB
All DBs
Position
14:31637716..31682712
Genome browser
AA seq
1659 aa
AA seq
DB search
MSCFVFWMLLFCPSLQKAAAEIGCACAGKSGCRCDGIKGDKGERGFPGPVGPSGPMGFPG
QEGPPGSAGPQGYPGRTGPPGLKGSRGITGTPGFPGFSGLPGTLGIGGPMGPPGIPGCNG
TKGDVGYPGYPGPPGAQGEPGSPGVPGQPGSRPFVPIPNDLWLKGKPGLPGLPGLKGLPG
SPGLPGPPGAAGIEGFPGPPGPLGDTGPKGFEGTAGFPGPQGPKGFRGPTGAPGPRGVKL
YVEGPKDLKGDPGDPGDPGPTGTPGFDGFQIKGQNGERGEPGDQGKFGKDGMPGEPGNPG
MKGDPGNPGPPGIPGFKGQKGVLGAGGLPGDVVELNGPSKKGERGPPGPSGLPGLRGQPG
PEGFQGLPGNPGQGNPGNPGPRGPPGGFGMKGDRGEPGKLIRGPPGTEGPPGFPGYPGPP
GAKGLPGGVTQKEGPPGFPGPDGRMGPPGDKGLPGPKGDQGDECRICSFSTAIPGPPGPP
GKPGPEGRPGVSGDPGPKGSAGPEGAAGPMGPRGFPGVPGETGPPGLKGDPGNMNSTGSR
GEKGLPGWPGSKGRDGLNGIPGKPGPQGAPGAKGNPGPPGLKGDQGYPGSPGTPGFPGQM
GERGPVGYGSAGTIGDKGRQGVPGLPGELGPAGEKGDAGHVIFSPGPLGVPGERGVPGQR
GKPGTPGATGRDGFPGSVGAKGEKGIASTGFRGPPGAKGNRGQAGAEGPPSRPGMPGRTG
PNGIPGDPGPKGNGGFGVPGSKGRHGPPGDGGSEGPEGVGGLPGSPGPPGSPGQEGAPGP
KGDLGPTGLKGQPGIPGNCQKGSSGPAGYLGSKGPIGVSGIIGVPGVKGNPGIAGLDIRG
PPGLNGLPGARGSPGNPGSDGHKGFPGLDGAPGARGQDGEPGLMGKSGLKGIDGFPGNPG
RPGPKGFMGKDGEPGDKGRGGQKGEKGDNGPQGQTSIEKIQGFPGDPGMPGLPGPNGLKG
DRGLPGYPGVRGKDGTPGPPGPQGSIGNPGFPGDRGAPGFPGPAGEAGEMGIPGPKGEKG
SSGVPGVVGSAGYPGTPGIKGGKGEPSLEVYGRPGLDGTKGDPGIPGLEGERGETGMPGL
LGNPGPDGKSGDRGNAGIPGTKGMPGPCGEKGTDGERGPPGAPGPRGLPGTTGAPGSPGA
PGEKGKQGHDGIPGRLGEKGEPGIPGQIPGANGFPGPKGIKGDFGPAGPPGPPGYPGPVG
DRGVTGPIGPTGNSGPPGSPGIGIEGPKGDKGQPGPPGRHGDPGPRGPAGPVTYSIKGDK
GLRGPPGRPGQAGDEGDEGPPGIPGFDGDPGFPGPKGDPGSVGLPGVTGMKGVHGFTGAK
GAKGLKGTPGPAGPRGKDTTVLAVPIPGDPGYSGEPGRPGDLGEPGWPGTPGPKGQPGPK
GAQGQKGKPGRSGHSGPKGDNGFPGRRGPPGYLGPQGPKGPDGPPGTHRTIRDIEGFIFT
RHSQSRAIPLCPAGTKQLFSGYSLLFVKANDRAHGQDLGTIGSCLQRFSTMPYLYCTVSG
TCNFASRNDYSYWLSTDQLMPADMAPISGVTLEPFISRCTVCEGIANTIAVHSQTTTTPP
CPNGWNSLWTGFSFVMQTSAGAEGAGQPLASPGSCLEEFRPVPFIECHGKGTCNYYANSY
SYWLAALQSSQMFRKPRSQTLKSGKLETIISRCRVCMKQ
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgagttgctttgttttctggatgctgctcttctgtccgagtttgcaaaaagctgcagcg
gagattggctgtgcgtgtgcggggaaatctggatgtcgctgcgatggaataaaaggagac
aagggtgagcgagggttccctgggcccgtgggacctagtggaccgatgggtttccccggt
caagaaggtcctcctggaagtgcaggtccacagggatatcctggaaggacagggccaccc
gggctaaaaggttcaaggggtataactggcacacctggctttccagggttttctggtctc
ccaggaaccctgggaattggaggtccgatgggtcctccaggaatcccaggatgcaatgga
accaagggtgatgtaggatatccaggatacccagggccacccggtgctcaaggggaacca
gggagtccaggtgttccaggacaaccggggtctcgtccgtttgtcccaatacccaatgat
ttatggttgaaaggaaagcctggtttgccaggattgccaggattgaagggtttgccagga
tccccaggattgccaggcccaccaggggcagctgggattgagggctttcctgggccacct
ggaccccttggagacacaggacctaagggctttgaagggacagccggattccctggaccc
cagggaccaaagggcttcagaggtccaacaggcgcacctggtccacgtggagtaaagtta
tatgtagaaggacctaaagacttaaagggagatccaggggacccaggtgacccaggccct
acaggtacacctgggtttgatggatttcaaattaagggtcagaatggtgagagaggagag
ccgggtgaccagggaaaatttggaaaggacggtatgcctggcgaaccgggaaatccgggt
atgaaaggtgatcccggtaatccaggacctcctgggattcctggatttaaagggcaaaag
ggtgttttaggcgctggaggtcttcctggtgatgtagtagaactaaatggcccttctaaa
aaaggggagcgtggacctccaggcccatcaggtctaccaggtctgcgtggtcaaccaggt
cccgaaggttttcaaggtctaccaggaaacccagggcaggggaaccccggtaaccctggt
ccgagaggacccccaggtggttttggtatgaaaggagacagaggcgagccagggaaactc
attcgtgggcctccaggaacagagggcccacctggattcccagggtatcctggaccacca
ggggccaaagggcttccaggtggtgttacgcagaaagaggggccaccagggtttcctggg
cctgatggcaggatggggcctccaggagataaagggctaccgggacccaaaggtgaccaa
ggagatgagtgcagaatatgttcattttccacagccatcccagggcctcctggtccccct
ggcaaacctggccctgaaggacgtccaggtgtatcaggagatccaggtcccaaaggctca
gcaggacctgaaggagcagcagggcctatgggcccgcgaggctttccaggtgtaccagga
gaaacaggccccccagggctaaagggagacccagggaacatgaatagcacagggagcagg
ggtgagaaaggcttgcctggatggccaggcagtaaaggacgggatggtttgaatggaatc
cctgggaagcccgggcctcaaggtgcaccgggtgcaaaaggaaatccaggacctcctggt
ttaaaaggtgaccaaggctaccctggttccccaggaacccctggttttccagggcagatg
ggagagcgaggaccagtgggctatggctcagcaggtactatcggggataaaggaagacaa
ggagttcctggtctgcctggagaactaggaccagcaggagagaaaggagatgcaggccac
gttatattctcccccgggccgcttggagtacctggggagagaggtgtacctggacaacga
ggcaagccaggaacacctggagcaactggacgggatggtttccctggtagtgttggtgct
aaaggtgaaaagggcattgcttcaacagggttccgtgggccaccgggagcaaaaggcaat
agaggacaagcgggagcagaaggacccccgtcaagaccaggaatgccaggaagaaccgga
ccaaatggcattccaggggaccccgggccaaagggcaatgggggatttggagttccaggg
agcaaaggcagacacggtcctcctggggatggtgggtctgaaggtcccgagggggttggt
ggactcccaggaagtccaggaccacctggatccccaggacaggagggtgctccaggccct
aaaggggatctgggtcctacaggactaaaaggtcagcctggcattccagggaactgtcag
aaaggatcttcggggccagcaggctatctgggttcaaaaggacccattggagtttcaggt
ataattggggttcctggtgtgaaagggaaccctggtatagcaggactggatatcagaggg
cctccaggattaaacgggttacctggggcaagggggagtccagggaatcctgggtcagat
ggacacaagggtttcccaggcctggatggggcacctggggcacgaggccaagatggtgaa
ccaggtcttatggggaaatctggactaaaaggaattgatggttttccaggaaaccctgga
agacctggacctaaaggttttatgggcaaggatggagaaccaggagataagggcaggggt
ggacagaagggggaaaaaggagataatggaccccaagggcaaaccagtattgaaaaaatt
caaggattccctggggatccagggatgccagggttacccgggccgaatggactcaagggt
gacagaggactaccagggtacccaggagttagagggaaggatggaaccccagggcctcca
ggaccacaagggtctataggtaatccaggttttccaggtgatcgaggagctccaggtttt
ccaggaccagcaggcgaagccggggagatgggaattccagggcctaaaggagagaagggg
tcttctggtgttcctggagtcgttgggtctgcaggttacccaggcactcctggcattaaa
gggggaaaaggagaaccaagtttagaagtatatggccgtccaggactggatggaactaag
ggtgacccaggcattccaggtctggagggagaaagaggggagactgggatgccagggcta
cttggaaacccaggaccagatggaaaatctggagatagaggaaatgctggaatcccagga
actaaaggaatgccaggcccatgtggtgaaaaggggactgatggagaaagaggtcctcca
ggagcccctggaccaagaggacttccaggtaccacaggagcccctggtagtcctggagcc
ccaggtgaaaaggggaaacaaggacacgatggcattcctggacgactaggagaaaagggg
gagccaggtattcctggccaaattccaggcgccaatggctttccaggcccaaaaggtatc
aaaggggatttcgggccagctggtccccctgggccaccaggttatccaggaccagtgggg
gacagaggagttactggacccataggacctactggaaactctggtccacctgggagtcct
gggattgggattgaaggccctaaaggagacaagggtcaaccaggcccacctggaagacat
ggagatcctggacctcgtggacctgcagggccagtaacatattctatcaaaggagacaag
ggattgagaggtcctcctggaagaccaggtcaggcaggcgatgaaggggatgaaggccct
ccaggaataccaggttttgacggtgatccaggatttccaggtcccaaaggtgatcctggt
tctgttggtcttcctggagtaacaggaatgaaaggtgtccatggatttactggcgctaag
ggagctaaagggttaaaaggaactcctgggccagccggcccccgtggaaaagatacaacg
gtgttggctgtgccaataccgggtgatccaggatactcaggagagcctgggagacctgga
gacctaggagagccaggatggccaggaacaccaggccctaaagggcagccagggccaaag
ggagcccaaggtcagaaaggcaaaccaggcagatctggccactcaggaccaaagggagat
aacggttttcctggaaggagagggccacctggatatttaggaccccaaggccctaagggc
cctgatggacctcctggaactcacagaactattagggatattgagggcttcatcttcacc
cgtcacagtcagtcaagagccattcctctgtgtccagctgggacaaagcagctcttttct
ggctactctcttctgttcgtaaaggctaatgacagagcgcatgggcaagacctaggtact
attggaagctgcctacaaaggttttctacaatgccgtatttatattgcacagtcagtggt
acatgtaattttgcttcaaggaatgattattcctactggctttctactgatcagctaatg
ccagcagatatggctccaatctcaggtgtaactttagaaccatttataagcagatgcaca
gtgtgtgaaggtattgcaaatacaatagcagttcatagtcaaacaacaacaaccccaccc
tgtccgaatgggtggaactcactctggactggtttctcatttgtaatgcaaacaagtgca
ggtgctgaaggcgctgggcagccgctggcatcaccaggttcctgtcttgaggaatttcgg
cctgtaccatttattgaatgccacggcaagggaacctgcaactattatgcaaactcttat
agctactggctggcagcactacagtcttctcaaatgttcagaaaaccaagatcacaaaca
ttaaagtctgggaaacttgaaactatcattagtcgctgtcgtgtctgcatgaagcaataa
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