Polyodon spathula (Mississippi paddlefish): 121327553
Help
Entry
121327553 CDS
T07273
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121327553
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121327553
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
121327553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WD40
WD40_Prp19
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
Lgl_C
Synaptobrevin
PEP5_VPS11_N
Beta-prop_NUP159_NUP214
CFAP43_N
Plant_tran
Motif
Other DBs
NCBI-GeneID:
121327553
NCBI-ProteinID:
XP_041127571
LinkDB
All DBs
Position
15:22019603..22181832
Genome browser
AA seq
1179 aa
AA seq
DB search
MKKFNFRKVLDGLTASSPGSASGTSTCPGGTTGVPAVGAAPKEIEVQETLASENFQISKM
VRHGFPYQPTALAFDPVQKIVAIGTRTGGVRILGRPGVDCYCQHDSEAAVLHLQFPINEG
ALVTACADDTLHLWNLRQKRPAILHSLKFNRERITFCHIPFQSKWLYVGTERGNTHVVNI
ESFILSGYIIMWNKAIELATKTHPGPVVHLSDSPRDEGKMLIGFESGTVVLWDLRAKKPD
FRFYYDEAIHSVSWHHEGKQFMCSHSDGSLTMWNLKNTAKPFQITFPHAKSQRDGKKPDP
CKPILKVEYKTSRSRCPFIFSEGWAYDKAGRRPSLTIMHGKSITVLEMDHPIVEFLTLCE
TPYPNEFQEPYAVVVLLEKDFIVVDLTQSHFPIFENPYPMDIHDSPVTCTAYFADCPPEL
IPALYSVGAKHKKQGYSNKEWPVSGGTWTLGTQTYPEIIITGHADGSLKFWDGSAITLEM
LYKLKTSKVFEKQKVGEGKQVAEIVEEDPYAIQMISWCPESRILCVTGISAHVILYRFSK
HEATTEIVSLEVRLQNDVEDIITPEVTENISPYTEPSQPITGSPSNVSPEEIKDSIPCLK
VKSRPVKMPQGYQAELVIQLVWVDGEPPQQIASLALNSAYGLVAFGNSNGLAVVDFIQKT
VLLSMGTIDLYGSSDPYPRQLRSPRRSKQPTADTSCMRGLSNIYSDSKKRIRTSHQSLSE
LSDSPISLELERCKSPTSDNVNGHCTSPTSQPCSTGKRVSATEGAKLNRWGPSRPPFRKA
QSAACMEISLPASHTEESRDNSFSRSRSSSVSSIDKESKETITALYFMDSYGRKNDGTLS
PCLWVGTSLGVVLVISLNLPSGEEQRQSEPVMVAPTGTVLMLKGALLTFSSVDCAGVLIH
PPYEVWRDPNSMDDNEKPRKRKLVTFSPSSSQDMGDYHFAVICSEKQAKVYSLPSQNCLY
AHSITESSFVLRADVVTVCNSVCLACFCANGHIMTLSLPSLRPMLDVNYLPLTDMRIART
FCFTNGGQALFLSSPTEIQRITFSQEMCENLQDMLGSQGPLFAPVETPEAQNRGFLKGLF
GGSGQTFDREELFGEAAAGKASRSLAQHIPGPGSMEGMKAAAGGVVGDLARARIALDERG
QRLGELEERTAAMMGSAESFSKHAHELMLKCKDKKWYQL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaattttcgaaaggttttggacggcttgactgcctcctcccctggcagc
gctagcggaacttcaacatgcccaggtgggaccactggtgtccctgcagtaggagcggct
cccaaggaaatagaagttcaagaaaccctcgcttcggaaaactttcagatctctaagatg
gtacgtcatggcttcccatatcagcccactgccttggctttcgacccagtgcaaaaaatc
gtggccattggaacgagaacaggaggtgtgcgaatattgggcagacctggcgtcgattgc
tattgtcagcatgacagtgaagcagctgttctacacctccagtttccaatcaatgaggga
gctcttgtcactgcatgtgctgatgacactcttcacctctggaacctgcgacaaaaacgt
ccagcaatcctccattctctcaaattcaacagagagcggattacattctgccatattcca
ttccaaagtaaatggctgtatgtgggaacagagagaggaaatacacatgttgtaaatatt
gagtccttcatcctctcaggatacatcatcatgtggaacaaggcgatagaactagcaaca
aagacccaccccggcccagtggtgcacttaagtgacagtcccagggacgagggaaagatg
ctgataggctttgaaagtggaacagtagtgttatgggacctccgagcaaaaaagccagac
ttcagattttactatgatgaggccattcattctgtaagctggcatcatgaaggcaagcag
ttcatgtgcagccattccgacggaagcctgaccatgtggaatctgaaaaacactgccaaa
cctttccagatcacctttccacatgcaaaaagccagagagatggaaagaaaccagaccca
tgcaaaccaatcctgaaagtggaatacaagacatcaaggagcaggtgtccatttatcttc
tcggagggctgggcatatgataaagcaggccgaagacctagcctgacaatcatgcacggt
aaatctatcacagtgctggaaatggatcaccccatagtagaattcttaacactttgtgaa
actccctatccaaacgaattccaggagccttatgcagtagttgtgctgcttgaaaaggac
tttatcgttgtggacctaacacaaagccactttcctatctttgaaaacccatatcctatg
gatattcatgactcgccagttacctgcacagcatactttgctgactgccctccagagcta
attcctgctctttactctgtaggtgccaaacacaaaaagcaaggctacagcaataaggaa
tggccggtaagtggtgggacctggacactgggaacacagacgtatcctgaaattattatt
acagggcatgctgacggatcactaaagttttgggatggatctgccataacccttgagatg
ctgtacaagctgaaaacatccaaggtgtttgaaaagcagaaggtgggagagggcaagcag
gtagcagagattgtggaagaggacccatatgccatacagatgatcagctggtgtcctgaa
agcaggatcctatgcgtcacaggcatctcagctcatgtcatactttacagattcagtaaa
cacgaggctactactgaaatagtgtcactagaggttaggcttcagaatgatgtggaggac
attatcaccccagaggtgactgagaatatctctccatacactgagccttcccagcccatt
acaggaagtcccagcaatgtctctccagaggaaataaaggacagcatcccctgcctcaag
gtgaagtctcgtccagtaaaaatgccccaaggctaccaggcagaattggtaatacagctg
gtgtgggtagatggagagcctccccaacaaatagcaagcctggctctgaactcggcctat
ggcttggttgcgtttgggaattccaatggcctagctgtggtggatttcatccagaagaca
gttctgctcagcatgggaaccattgacctttacggttccagtgacccatacccgaggcag
cttcgctctccacgcagaagcaagcagcctacagcagacacctcttgcatgcgcggcctg
tctaacatttattcagattcaaagaaaaggattcgtacatcccaccagagtctgtctgag
ctgtctgacagccctatttccttggagctagaacgctgcaagtctcccacatcagataat
gtaaatggacattgcactagccccacctcacagccctgcagcactgggaagcgcgtctct
gccactgaaggtgctaaactgaaccgctggggtcctagccgaccccctttccgaaaagca
cagtctgctgcttgcatggagatctctttgcctgcctcccacacagaagaaagccgggac
aattccttcagccgctcccgtagctccagtgtgtccagcattgacaaggaatccaaggaa
accataacagcactgtacttcatggactcgtatgggcgtaagaatgatgggaccctctcg
ccatgcctttgggtcgggaccagcctaggggttgtactggtcatctctttaaacctgcct
tctggtgaggaacagaggcaaagtgaaccagtcatggtggctcccactgggaccgtgttg
atgcttaaaggagcactgctgacgttttcatctgttgactgtgctggtgtgctgatccac
cctccctatgaggtgtggagggatccgaacagcatggatgacaatgagaaaccccgcaag
cgtaaacttgtaaccttctcgccctcctcttctcaggatatgggggattaccattttgcc
gtcatctgttcggagaaacaggccaaagtctactcactgccttcccaaaactgcctttat
gcacatagcatcacagagtcgtcgtttgtgctcagggcagatgttgttacagtttgtaat
agtgtttgcctggcttgcttctgtgcaaatggacatatcatgacactaagcttgcctagc
cttcgaccaatgctggatgtaaactatctacctttgacagacatgaggattgctcgcact
ttctgctttacaaatggagggcaggcactgttcctgagctctcctacagagatccagcgc
attaccttcagccaggagatgtgtgaaaacctgcaggacatgttggggtctcaaggacca
ttgtttgcaccagtggaaacgccagaggctcaaaacagaggatttctaaaaggactcttt
ggaggaagtggacaaacatttgacagggaagaactctttggggaggcagctgcaggaaag
gcctcgcggagtcttgcacagcatattccaggccctgggagcatggaggggatgaaggct
gctgctggaggggtagttggagacctggcaagggcccgcatcgctttggatgagagagga
cagagactgggcgaactggaggaacgcacagctgccatgatggggagcgcagagtcattt
tccaaacatgctcatgagctgatgctaaaatgcaaggacaagaagtggtatcaattgtaa
DBGET
integrated database retrieval system
