Polyodon spathula (Mississippi paddlefish): 121327708
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Entry
121327708 CDS
T07273
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121327708
03015 mRNA surveillance pathway
121327708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121327708
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121327708
mRNA cycle factors
P-body specific factors
121327708
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
121327708
NCBI-ProteinID:
XP_041127790
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All DBs
Position
15:19165417..19175756
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AA seq
479 aa
AA seq
DB search
MRSEREVMTVGRERKIVEIHFREQDSNPANIKHKEEKREVFTKVVIRRLPPNLSKEQLEE
QLNPLPAYDYFEFFSADQSLYPHLFSRAYINFKNPEDIVLFRDRFDGYVFIDHKGQEYPA
VVEFAPFQKVSKKKLKKKDTKSGSIEEDPEYKKFLECYCGDEEKATANPETLLGEIEAKT
RELIAKRTTPLLEYIKHKKIEKQRIREEKREERRRRELEKKRMREEEKRKRREEERRKRK
ETEKQKKLAEKDIKIKLLKKPDKDDEQDLDKLKEKGDCGDIEKGKWDKNMKSKQLDTVTK
DQKEKVQTESDKEQREHGRRLREKDPDRLRCREDERKRQRHHYEFDKFMRRKEETKWGKG
YCHDRAKKDIHNSYSYCLDGDKLGKEDRGDDLKDRIRNKSVLVHQEKRTSHSEGRDVIGG
ALPTKDRPAMQLYQPGARSRTRLGSGGKSYDCSSKSPVRIVDRKFEAATGTGSEKSGEE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgagagggaggtgatgaccgtgggtagggaaagaaagatagtcgaaatacat
tttagggaacaagattctaacccagccaacatcaagcacaaagaagagaaaagagaagtc
tttaccaaggtggttattcgacgcctgcctcccaacctctcaaaggaacagcttgaggaa
caacttaaccctttgcctgcttatgactactttgagttcttctcagctgatcaaagcctt
tatccacaccttttctcaagagcatacatcaattttaaaaaccctgaagacatagttctc
ttcagagaccgctttgatggatatgtatttatagatcacaagggccaagaatatcctgct
gttgtggaatttgcgccattccaaaaggtatccaaaaagaagctaaaaaagaaagatacc
aaatctggcagtattgaagaagatcctgaatacaaaaagtttttggagtgttattgtggg
gatgaagagaaggccactgccaatcctgagacacttcttggagagatagaggcaaagacc
agggaacttattgctaaaagaactacaccacttctggaatacataaaacataagaaaata
gaaaagcagagaatcagggaggagaagcgagaagaaagaagacgaagggagctggagaaa
aaacgcatgagagaggaggagaaacggaaacgcagggaagaggaacggcgcaaaaggaag
gaaactgaaaagcagaagaagctagcagagaaagacatcaagattaagctccttaaaaag
cctgataaggatgatgagcaagacctggacaagctgaaggaaaagggagactgtggagac
atcgaaaaggggaagtgggataaaaacatgaaatcaaaacagttagacactgtaaccaaa
gaccaaaaggagaaagtgcagacagagagtgacaaagagcagcgagagcatgggaggcgg
ttaagagagaaggaccccgacaggctgaggtgccgtgaagatgagcgtaagagacagaga
caccactacgagtttgacaagttcatgagacgaaaggaagagaccaagtggggaaaggga
tactgccacgacagggctaagaaagacatccataacagttattcatattgtctggatggt
gacaaactgggaaaagaagacaggggagatgatctaaaagaccgcatccgcaacaagtct
gtgttagtgcatcaagagaaaaggacctcccattcagagggtcgtgacgtgataggaggg
gctctgccaacgaaggaccgtccggcaatgcagctctaccaacctggagctcgcagcaga
acacgcctgggatctggtggaaaatcttacgactgctccagcaagtctccagttcgcatt
gtcgacaggaagtttgaagcagctacaggaactggatcagagaagagtggagaagagtag
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