Polyodon spathula (Mississippi paddlefish): 121327804
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Entry
121327804 CDS
T07273
Name
(RefSeq) SR-related and CTD-associated factor 4-like
KO
K13167
SR-related and CTD-associated factor 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121327804
03041 Spliceosome [BR:
pspa03041
]
121327804
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121327804
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
121327804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
121327804
NCBI-ProteinID:
XP_041127947
LinkDB
All DBs
Position
15:34850421..34883251
Genome browser
AA seq
1074 aa
AA seq
DB search
MDAVNAFNQELFCLMDMKPPISRAKMIAITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVVDSIVRQSRHQFGQDKDVFGPRFIKNLTGTFQNLYLCPTEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTGTSAAVPELDNDTSIPESPPSPVKVPTEPPLVTTNSAPIVPQ
LPNSDAFAAVAQLFQSTQGQQLQQILQTFQQPPKPQSPAPDNKVLTQVQAIAAQLKAPVS
QTSEQKAAFDKKLLDRFDYDDEPEGGEDAKKDDSTPFPALQSFGFPEGMQQPLYQQLTGQ
ISNMEHFQQHMLGMPQEPPHHQGPLPPNGQLQGYSIMPAASYPPMVQQMTQSILPPPTSQ
VQHGYPPGYSTQNEPYPQQLAQQQDVSMEIDPPLMKEVKHRTENRMSRSKSASRSPKRRR
SRSNSRSRRLRHRRSRSRSRDRRRHSPRSRSQERRDREKDRERRQKGLPQMKADTLSVCS
TTLWVGQLDKRTQQQDVANLLEEFGQIESINMIPPRGCAYIVMVHREDAYRALHKLSRGS
FKVNQKAIKIAWALNKGIKPEYKQYWDVDLGVTYIPWAKVKTEDLDSFCEGGILDIETLC
PEWKKHSNDAEKTDEVSQNGGSEAAQVGDAPIAAPIQVPGVQPMQAVGALQPPSFPSHMG
IPPPGFPPGVPPPFMRPGFNPLQMPPGFLPPGAMPPMGSGAPLLPNPVANIQTSASLRSS
TADPKKDSSGGNSTVLTGPRNNAESAEGAKHYSSLPGQNPGMNPGLTSPNLPVSLPQPMG
ALGNQAGAPGGPVIGHHPASGGLLGARPGMIPLQRPPGVPPPHLQRFSLLPPRPNMPMPP
QLMHRGPPPGPGGFGMLPPPGLRGPFSPHGPFVRPGGPGGPGGAGGPRGPDGPEDRDGRQ
FRNDRQGFPPGRERDQERFGRRPFGGGGRGEPEGRDRYSNRHDDYDRPGGGRDRRDWGRS
MEPDRNRDLEDKNRRSSGHRDRDRNSRDGESRRDKDDNRGREKPEMADMESTDKYRDSNN
TEEATDSVKELTVPDSESKVSEVAAEPVMLSVKESAAEPTSSTEQPEKPDETQC
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgttaacgctttcaatcaggagcttttctgcttgatggacatgaagcccccg
atttcacgggcaaagatgatcgcaattacaaagtcagcaatcaaggccattaagctttac
aaacatgttgtccaaatagtagagaagttcatcaaaaagtgtaaaccagaatataaagtt
ccaggattgtatgttgttgattctattgtccgccaatcacgtcaccagtttggacaagat
aaagatgtgtttgggccaaggtttattaaaaacctcactggaactttccaaaacttgtac
ttgtgtcctactgaagacaagagtaagatcgtgcgtgtattgaacctttggcaaaagaat
ggagttttcaagattgaaattattcagcctctactggatatggcagctggaactggcact
agtgctgcggtgcctgaattggataatgataccagtataccagaatcacctccctcgcct
gtgaaagtcccaacagaacctcctctggtcaccactaactcggctcccatcgtgccacag
ctacccaactctgatgcctttgctgctgtcgcacagttgttccagtcgacacaaggacaa
cagctacaacaaattctgcagacatttcagcagccccccaagccacagtcacctgctcct
gacaacaaggtgttgacgcaggtacaggctatcgctgctcagttgaaagcccctgtttct
caaacttcagaacagaaagcagcttttgataagaaattgcttgatcgttttgactatgat
gatgaaccagaaggaggagaggatgcaaagaaggacgattctacaccatttcctgcttta
cagtcttttgggttccctgaaggtatgcagcagcctttgtatcagcagcttactggtcag
atttcaaacatggaacattttcagcagcatatgttaggaatgccacaggaaccgccccat
caccagggccctcttcctcccaatggacagcttcaaggatatagcattatgcctgctgca
tcttatccgccaatggttcagcaaatgacgcagtctattttgccaccaccaacttctcaa
gtacaacatggatatccaccaggttactccacacagaacgaaccttatccacaacagttg
gcccaacaacaagatgtatctatggaaattgacccacctttaatgaaagaagtaaaacat
cgtacagaaaacagaatgtcaagatctaagtctgcctccagatccccaaaaaggagacgt
tctcgctcaaactccaggtcacgaaggttgcggcaccgccgttctcggtcccggtcccgc
gatcgacgcagacactcgccgcgctcccgttcacaggagagacgagacagggagaaagac
agggaacgcaggcaaaagggactgcctcagatgaaggctgatacgctcagtgtttgtagc
actacgttgtgggtaggccaactggacaagaggacgcagcagcaggatgtggctaacctt
ttagaggagtttggacagatagagtccatcaatatgattcctcctcgagggtgtgcatac
atagttatggttcatagggaagatgcctacagagccttacataagttaagcagaggatct
ttcaaagtaaaccaaaaagctattaagattgcttgggcattgaacaaaggaataaaacct
gaatacaagcagtactgggatgtggatctaggtgtgacatatattccttgggctaaagtg
aaaacagaagatctggatagcttttgtgaaggaggcattttagacattgaaacactatgt
ccagagtggaaaaaacattcaaatgatgctgagaaaactgatgaggtatctcaaaatgga
ggttcagaagctgcacaggttggagatgctccaatagctgccccaatacaggttcctgga
gttcagccaatgcaggctgttggtgccctacagcctccgagtttcccaagtcacatggga
atccctcctccgggatttccaccaggggtccctcctccattcatgcggcctggctttaac
cctctgcagatgcctccaggttttctccctcctggtgctatgcctccaatgggatctgga
gcgcctttacttcctaatccagttgcaaacatccaaacatctgcttctcttagaagttca
acagcagacccaaaaaaggattcttcaggtgggaactcaactgttcttactggcccgaga
aataatgcagaatctgctgaaggtgcaaaacattacagttctttaccaggacaaaatcca
ggcatgaatccaggactaacttctcccaaccttcctgtgtctttaccacaacctatgggt
gctcttggtaaccaagcaggagctcctggggggccagtgataggccatcatcctgcatcc
gggggtcttttaggagcaaggcctgggatgatacctcttcagaggcctcctggagtgcca
ccacctcacctgcaaagattttcactccttccaccccgtccaaatatgcccatgcctcca
cagctcatgcatagaggtcctccacctggaccaggaggatttggcatgctccccccgccc
ggactccggggccccttttcaccacatggtccttttgtcagaccaggtggccccggtggt
cctggaggtgcgggaggtccaagaggtcctgatgggccagaagatcgggacgggaggcag
tttagaaatgatagacaaggtttccctccaggaagagagcgagaccaggagcggtttgga
aggcggccctttggtgggggtggccgaggtgagcctgaaggtcgggatcgctacagcaac
cgccatgatgactatgaccggcctggcggaggacgagacagaagggactggggaaggagc
atggaacccgacagaaacagagacttggaggacaagaacagacggtctagtgggcataga
gacagagatcggaattctagggatggggagtctcgtagggacaaagatgacaaccgtgga
agggagaaacctgaaatggctgatatggagagcactgacaaataccgtgactcaaataat
acagaggaagcaacagactccgtcaaagaactgactgtaccagattctgagtcaaaggtt
tctgaggtggctgctgagccagtgatgttgtcggtgaaagaatcagcagctgagcccaca
tcatctactgaacaaccagaaaagcctgacgagacccagtgctag
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