Polyodon spathula (Mississippi paddlefish): 121327844
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Entry
121327844 CDS
T07273
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121327844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121327844
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121327844
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
121327844
NCBI-ProteinID:
XP_041128039
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Position
15:7224801..7245794
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AA seq
862 aa
AA seq
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MSVKAFELVPAVERALLMGDKAQINIECIECCGKNLYVGTSDCFIYHFLLEEKTTSKEKL
IFSVQKQQHKYLGLKKPVSELKAASALNRLIVLCDTTIMLVNMLNLDPVQSGAKIKGVVT
FTVNENPVNGDPFCVELGVISVKRRTIQIYMVYEDRVQIVKELSTPEQPSAVSLDGYFLC
LALTTQYIIVNYSTGASQDLFPFDTEEKKPIVKRISREEFLLAGPGGLGMFATAEGISQR
APVHWSENVIGAAICFPYVLALDEGFVTVHSMLDQQLKQTLPFRDGHIMQDFEGKVILAT
TKEVYMLVPLPLERQVQGLLASQRVEEAILLAEGAQRNIPKDKFLVMYRRILQQAGFIQF
GQLQFLEAKDNFRKGQLDVRELISLYPLLLPSTSTFTRSHPPLHEFADLNHLAQGDHEKI
TKWKRFLISYLKEIRSTEVANGYKEDVDTALLKLYAEANHESLLDLLVSENFCLLVDSAP
WLEKHKKYFALGLLYHCNGQDDAAVQLWVRIVKGELQDTTRPDLYEYVVDFLSFCSSQEL
VWKYADWALQKNQKVGVQIFTRRPVDEEKTGKLNPDDIIKYLHKYPQAVTQYLEHLVLDR
KIQKEKFHTHLAVLYLDEVLQLHSQIDQHCEELSPARAKLRSLLQQSCLYRVQLVLGKIK
DTDLNLERAILYGKLEEHDKALHILVHQLKDFQAAEDYCSWNSEGRDLSYRQELFHMLLA
AYMDPAVTNDTLVMAAVDLLNSHAEVFDAVRVLRLVPGNWSIQLLCPFLRGAMRENMHSK
RMSQVALGLAKSENAIYKHEKLKYKGLINLSEKKGCQLCHNTFSAPEFVCYPSGVLVHIH
CAAKRNRDSASKQHFTNPENHT
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaagcttttgaacttgttcccgctgtggaacgagcgctcttgatgggagac
aaagcccagataaacatagaatgcatcgaatgctgtggcaagaacctgtacgtcggcacc
agtgactgtttcatctaccacttcctgctagaggaaaagaccacgtcaaaagagaagctg
atcttttcagtccaaaaacagcagcacaaatacctgggcctgaagaagcctgtcagtgag
ctgaaggcagcttcagccctgaacaggttaattgtgctgtgtgacactacgataatgttg
gtcaacatgttgaatttggatcccgttcagtcaggagctaaaatcaaaggtgttgttact
ttcactgtgaatgaaaaccctgtgaatggagaccccttctgtgtagaacttggtgtcatt
tctgtcaagagaaggactatacagatctacatggtgtacgaggatcgagtgcagatagta
aaggaactgtccactccagagcagccctcagcagtcagtctggatggctatttcctctgt
ttagcacttacaacacaatacattattgtaaattacagcactggagcttcccaggatctt
tttccttttgacactgaggagaagaaacccatagtcaagaggatcagccgagaggagttt
ctgttagctggacctggtggtttaggaatgtttgccactgcagaagggatttcccagcgt
gcacctgtccactggtctgagaatgtgattggggcagcaatctgttttccctatgttctg
gcattggatgagggctttgttacggtgcatagcatgttggaccagcagttgaaacagact
cttcctttcagggatggacacataatgcaggattttgaagggaaggttattttagccact
acgaaagaggtgtatatgcttgttccattgcctctggaaagacaggtccagggcctcctt
gccagtcaaagggtggaagaagctattcttttggcagagggagctcagaggaacatccca
aaagataaatttctggtgatgtacagaagaattctgcagcaagcgggatttatacaattt
ggacagcttcaatttttagaagctaaagacaatttcaggaaaggtcagcttgatgtccgg
gagctcatttctttatatcctttgctactgccttcaacttcgacattcacacgctcacat
cccccgctgcacgagtttgcagatctgaaccatctcgcccagggggaccacgagaagatc
accaagtggaagaggtttctgatcagctacttgaaagagatccgcagcacggaggttgct
aatggttacaaggaggacgtggacacagcgttgctgaagctgtacgcagaagcaaaccat
gaaagcttgttggatttgttagtttcagagaacttctgccttcttgtggacagtgctccg
tggcttgagaaacacaaaaaatattttgcactaggacttctctatcattgtaatggtcag
gatgatgctgctgtgcagttgtgggtgagaatagtaaagggtgaacttcaagatactacc
cggccagacctgtatgagtatgtggtggattttcttagcttctgctcaagtcaggaactg
gtctggaaatatgcagactgggccttgcagaaaaatcaaaaggttggtgttcagattttc
acaagaaggcctgtggatgaagaaaagacaggcaaattgaatccagatgatatcatcaag
tacctgcacaaatacccccaagctgtcactcagtaccttgagcaccttgtgctggacaga
aagattcagaaagagaagttccacactcacctagcagtactctaccttgatgaagtcttg
cagctgcattctcaaattgaccaacactgtgaagaactgagccctgccagagccaaactg
agaagcctccttcaacaatcctgcctatatagggtgcaactggtgctaggtaaaattaaa
gacacagatcttaacttggagcgcgctatattgtacgggaagctggaagagcatgacaaa
gccctgcacatccttgttcaccagctgaaggatttccaggcagcagaggactattgctcg
tggaactcagaaggcagagacttgtcttacaggcaagagctatttcatatgctactggca
gcatatatggaccctgctgtaactaacgatacattagtaatggctgcggtagacctttta
aatagccacgctgaagtgtttgacgcagtccgagttttaagacttgttccgggtaactgg
tcaatacagctactatgtccatttctgagaggagcaatgagggaaaatatgcattctaaa
cggatgtctcaagtggccttgggattagcaaaatcagagaatgcgatttacaagcatgag
aagttaaaatataaaggtcttattaacctgtctgagaaaaagggctgccagctgtgtcac
aacactttcagcgcgcctgaatttgtttgttatcccagcggcgttcttgtgcacattcac
tgcgcagcgaagaggaacagagactctgcaagtaagcagcactttacaaaccccgaaaac
cacacatga
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