Polyodon spathula (Mississippi paddlefish): 121327922
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Entry
121327922 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121327922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121327922
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121327922
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121327922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
PRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
zf-C3HC4_3
zf-RING_5
Inhibitor_Mig-6
U-box
NDNF
Motif
Other DBs
NCBI-GeneID:
121327922
NCBI-ProteinID:
XP_041128203
LinkDB
All DBs
Position
15:complement(15246049..15364874)
Genome browser
AA seq
686 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFSCAHRILVSHCTSNEPVESVSAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRFQKASLSGPNSPSEIRRERAFDGNAMTTSSEKVQC
QFCDQDPPQDAVKTCVTCEVSYCEDCLKATHPNKKPFTGHRLIEPIPDSHLRGLMCLEHE
DEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALSERYEKLKRSPGKFFSQRNEQEASDQQ
GLDTNLSNLIKRNNELETLMGKLIQTCQHVEVNATRQESKLIEECDQLIDIIQQRRQIIG
TKIKEGKVVRLRKLAQQIGNCKQCIDKSSSLITQAEQTLKENDHARFLQTAKNITERVSM
ATASSQVLIPQINLNDTFDTFALDFSREKKMLESLDYLTAPNPPGIREELCTASHDTITV
HWTSDDEFSIVSYELQYAIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIF
IVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLKVSHDNLTVERDETSSKKSHTQER
FTSQGSYGVTGNVYIDSGRHYWESLIGGSTWYAVGISYKSAPKHEWIGKNSASWVLCRCN
NSWVVRHNSKELPIEPSPHLRRVGVLLDYDNGFLAFYDAVSSQHLYTFDISFAQPVCPVF
NVWNKCLTVLTGLPIPDHLDCTELQP
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggaaacattggagtcggagctgacctgccctatctgtctggagctcttcgaagatcct
ctgctgctgccttgcgctcacagcctctgtttcagctgtgcacatcgtatcctggtctcc
cactgcacatctaacgagcctgtggaatctgtcagcgcattccagtgtcctacttgtcgt
tatgtcatcaccctcaaccagaggggtctagagggactcaagcgcaacgtcaccctgcag
aatattattgaccgcttccagaaagcttcattgagcgggcccaactccccaagcgagatc
cgtcgagagcgggcctttgacggcaacgccatgaccacatccagtgaaaaagtgcagtgc
cagttctgtgaccaagaccctccacaggacgctgtcaagacctgtgtcacctgtgaggtc
tcctactgtgaggactgcctgaaggccacccaccccaacaagaagcccttcacaggccac
cgcctcatcgagccaatcccagactcacacctgcgcgggcttatgtgcttggagcacgag
gacgagaaagtgaacatgtactgtgtgacggacgaacagttaatctgttctttgtgcaag
cttgtggggcggcacagggatcatcaggtggcagccctgagcgagcggtatgaaaaacta
aagagatcccctgggaagtttttcagtcagaggaatgagcaggaagcctcagaccagcaa
ggtttagacacaaaccttagcaacctaatcaagaggaataatgaactggaaactctaatg
ggtaaactcattcagacatgccagcatgtagaggtaaatgcaaccagacaagagtccaaa
ctaattgaagaatgtgatcagctgattgacatcattcagcaaaggagacaaattattgga
acaaaaatcaaggaagggaaggtggtgagattgcgtaaactggcccagcagattggtaac
tgcaaacaatgcattgataagtcctcgtccctcatcacccaggctgaacaaaccctcaag
gaaaatgatcatgcccgctttctgcagacggctaaaaatatcactgaaagagtttccatg
gcgacagcatcttcccaggtgctgataccgcaaatcaacttaaatgacacgtttgacaca
tttgcattagacttttcaagggaaaagaaaatgctagaaagccttgactatctcaccgct
ccaaatcccccgggaattcgtgaagagctgtgtacagcgtcgcatgatacaatcactgtc
cactggacatcggatgatgaattcagcattgtctcctatgaacttcagtatgctatcttc
acaggacaggccaatgtagttagtttatgtaactccgctgacagctggatgattgttccc
aatattaaacagaaccactacactgtgcacggactgcagagcggcaccaagtacatcttc
atcgtcaaggcgataaatcaggctggcagccggagcagtgagcctggcaagctcaagaca
aacagtcagcctttcaagttggacccgaaatctgcccatcggaagttaaaggtgtcccat
gacaatctaactgttgaacgtgacgagacttcttcaaagaagagtcacacgcaggagcgt
ttcaccagtcaggggagctatggtgtgacaggcaatgtgtacattgacagtgggcgccac
tattgggagtcccttattggaggaagcacatggtatgcagttggaatctcctacaagtca
gctcccaagcatgagtggattggtaagaattcagcctcttgggtcttgtgtcgctgtaac
aactcctgggtagtgagacacaacagcaaggagttacccatcgagccctcccctcacctg
aggcgtgttggagttttgctggactacgacaatggctttctggccttctacgatgccgtg
agctctcagcacctttacacgtttgacatttcatttgcacagcccgtgtgccctgtattt
aatgtgtggaacaagtgtttaacagttttaacagggcttcccataccagaccatttggat
tgcactgagctgcagccgtga
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