Polyodon spathula (Mississippi paddlefish): 121327923
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Entry
121327923 CDS
T07273
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121327923
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121327923
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
ROBO family
121327923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
V-set
fn3
C2-set_2
FN3_DSCAM-DSCAML_C
Unc5_NetrinR_N
Ig_PDGFR_d4
Pur_ac_phosph_N
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
121327923
NCBI-ProteinID:
XP_041128208
LinkDB
All DBs
Position
15:37728124..38067852
Genome browser
AA seq
1659 aa
AA seq
DB search
MQIKWTGLASIVVTAVFRLTISQHLVGQLLPDSDSPERGNDSGTPAPASDNDDNSLGYTG
SRLRQEDSPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKDGERVETDKDDPRSH
RMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSHNASLEVAILRDDFRQNPSD
VMVAAGEPAVMECLPPRGHPEPTISWKKDGVPVDDRDERITIRGGKLMITNARKNDAGKY
VCVGTNMVGERDSEIAELTVLERPNFVKRPSSQSVLVDESVEFRCEARGDPVPAVRWRKE
DGDLPKGRFEIRDDHTLKIRRVTGADVGSYSCIAENMVGKTEASATLTVHVVSVPPQFVI
RPRDQVVAVGRTVTFQCEATGNPQPAIFWQREGSENLLFSYQPPQPSSRFSVSQTGDLTI
TNAERSDVGYYGCQALNVAGSVITKALLEVTDVVSDRPPPVIKQGPVNQTVAVDGTIVLN
CLATGSPPPTILWRKDGGLVSTHDSRVKQQETGALQIRYAKLGDTGMYTCIASTPSGEAT
WRAYLEVQEFGVPVQPARPTDPNLIPSAPSKPEVTDVSRALVTLSWQPNLTSGATPTSYI
IEAFSHASGSSWQTVAEHVKTETYTLKGLKPSAVYLFLVRAVNAYGLSDPSPIADPVKTQ
DIPPTSQGVDHKQIQRELGDVIIHLHNPTILSSSSVKIQWTVEQQSQYIQGYKILYRSNS
DGQGKSDWSVFEVKTPAEDNAVIPQLKKGVPYEFKARPFFNEFQGADSEVKYAKTFEEAP
SAPPQSVTVTKNDDNGTAILVSWQPPPEEFQNGVLQEYKIWCLGNESRYHINKTVDGSTF
SLVIPSLFPGIRYSVEVAASTDAGLGVKSESRFIQLDSSGRITANAEESVSTLSQQISDV
VKQPAFIAGIGAACWIILMVFSIWLYRHRKKRSGLSSSYAGIRKVPSFTFTPTVTYQRGG
EAVSSGGRPGLLNIGEPAAQPWLADTWPNTCSNHNDCSMNCCTSGNGNSDSNLATYSRPA
DCIANYNNQLDSKQTNLMMPDSGVYGDVDLSNKINEMKTFNSPNMKDGRFVNPAGQPTPY
ATTQLIQSSIGNNINSGNTEMNEKHWKPSIQQKQEVPALQYNIMEQNKLNKDYRVTDTSI
PATIPYNQSHDQSTAGSYNSSDRGSNTSGSQGHKKSRTPKIPKQTTLNWADLLPPPPANP
PPCRSNEEYTMSMEESYDPEMKCPVPPSRMYLQDELEEDEEDEEEEIERGPTPPIRGAAS
SPAAVSYSHQSTATLTPSPLEELQPMLQECQEEMARTQHQHDRRRHPVSPAPPPRPISPP
HTYGYISGPLVSDMDTDAPDEEADEADVEVARMHSRRLLLRGLEQTPASSVGDLESSVTG
SMINGWGSASEEDNASSGRSSAVSSSDGSFFTDADFAQAVAAAAEYAGLKVAKYSMPDAA
RGRRHYMNPNSHRPTSPVSTDSNMSAAVVQKTRPAKKQKHPPAHLRKDVYTEDLPPPPLP
PPAIKSPTHQTKSLLEGRPMMSSKLAPAEQRGDRSAERRGGNYPRQHSERTSSTECRESQ
ERQRESKSRGSRSARHEGVPGKARQHPGPEDILPYSRPTFPTAHNPRDPSSSSSMSSRGS
GGRRRADQTSAGRRNPSDAGLQGMGTFEQEDDELEGAES
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcaaatggacaggacttgcttcaattgtcgttacagctgtcttcaggctaaca
atttcccagcatcttgtgggacaacttcttccagactctgacagcccggagaggggcaac
gacagtggcacgccggccccagcctccgataatgatgacaattcactgggctacacagga
tcccgccttcgtcaggaggattccccccctcggatagtggaacacccctctgacctcatt
gtctccaaaggagagcccgccactttgaactgcaaggcagaaggccggcctacacccacc
attgagtggtataaggatggcgagcgggtggagacggacaaggatgatcctcgctcccac
cgtatgctgcttcccagcggctcactcttcttcctccgcatcgtacacggccgacgcagt
aaaccggacgaggggagttacgtctgtgtggccaggaactacctgggggaagccgtgagc
cacaatgcatcgctggaggtagccatcttgcgtgatgatttcagacagaacccttcggat
gtgatggtggcagctggtgaacctgcagtaatggagtgcctgcctcctcgtgggcaccct
gagccgaccatttcctggaaaaaagatggagttccagtagacgacagagatgaaagaatt
acaatcagaggaggaaaacttatgatcacaaatgcccggaagaacgatgctggcaaatat
gtgtgcgttgggaccaatatggtgggcgagcgagacagtgaaattgctgagctcactgtt
ctagagcgtcctaactttgtgaaaaggccaagcagccaatctgtgcttgtggatgagagc
gtggaatttcggtgcgaggccagaggggacccagtacctgcagtgagatggcgtaaggaa
gatggagacttgccaaaaggaaggtttgaaattcgtgatgatcacaccttgaagatacga
cgggtgacaggagctgatgtggggtcctattcctgcattgcagaaaacatggtgggaaaa
acggaagcctctgccactttgacggtgcacgttgtatctgtccctcctcagtttgtgata
cggcctcgagaccaggttgtagcagtggggcggaccgtaactttccaatgcgaggcaact
ggaaacccacagcctgccattttctggcaaagagaaggtagtgagaatcttctcttctca
tatcaacctccccagccttccagtcgattttctgtctctcaaaccggagatttaaccatc
accaatgcagagaggtccgatgttggctactatggctgccaggctcttaatgttgctggg
agcgttatcaccaaagctcttctggaagttacagatgttgtatcagacagacctcctcct
gttattaaacaggggcctgtgaaccagactgtggctgtcgatggtaccatagtgctcaac
tgtttggctactggctctccacctcccaccatcttgtggaggaaggatggggggctcgtc
tctacccatgattcccgtgtcaaacagcaggagacgggtgctctccaaatccgatatgcc
aagttgggtgacacaggcatgtatacctgcattgcttccactccaagtggagaagctaca
tggagagcctacctcgaagttcaagaatttggggttccagtacagccagcaagacccaca
gacccgaatttaattccaagtgcaccttcaaaacctgaggtaactgatgtcagccgggcc
ttggtaacgttgtcatggcaaccaaacttaacttcaggagccaccccaacttcttacatc
attgaggcttttagccatgcatctgggagcagctggcaaactgtggccgagcatgtgaag
acagagacatacactctgaaaggattgaaacccagtgctgtatatctctttcttgtgaga
gctgtaaatgcttatggacttagtgatccaagtccaatagctgatccagttaaaactcaa
gatattccacctacaagtcagggagtggatcacaaacaaatccagagggagctaggagat
gtcatcatccatctccacaaccccaccattctgtcttcctcctcggtcaagattcagtgg
acagtagaacagcaatctcagtatatccagggatataaaatcctgtaccgatccaactca
gatggtcaggggaaatcggactggtctgtctttgaagtgaagaccccagctgaggacaac
gctgtcatccctcagctgaagaaaggagtcccctatgagttcaaagcccgcccgttcttc
aatgagtttcagggggctgatagtgaggtgaaatatgcaaaaacctttgaagaagctccc
agtgcccctccccagagtgtaacagtaacaaagaatgatgacaatgggacagccatcctg
gtctcctggcaaccgcccccagaggagttccaaaatggagtattgcaggagtacaagatc
tggtgccttggaaatgaaagccgctaccacataaacaaaactgtggatggctcgactttc
tctctggtcatccctagcttgttcccaggaatccgatacagtgtggaagtagcagctagt
actgatgcagggttgggtgtgaagagcgagtcaaggtttattcaactcgactcgtcagga
agaatcactgccaatgctgaagagtctgttagtactctatcacagcagatatccgacgtg
gtaaagcagcctgcgtttattgctgggattggagcagcctgctggattatcttgatggtt
tttagcatctggctgtaccgacataggaagaaaaggagtggcctcagtagcagttatgca
gggataaggaaagttccatcttttaccttcacaccaacagtgacctatcagagaggagga
gaagctgtaagcagtggaggaagacctggtttgctgaacatcggtgagcctgctgcacaa
ccatggcttgcagacacctggcccaacacttgctcaaaccacaatgactgcagcatgaac
tgttgtacatcaggcaatggaaacagcgacagcaatctcgcgacctacagccgcccagct
gattgtattgcaaattacaacaaccagctagatagcaaacagaccaacctgatgatgcct
gactctggagtgtatggagatgtggacctgagcaacaaaatcaatgaaatgaagacattc
aacagccccaacatgaaggacgggcgctttgtcaacccagcaggacagccaacgccttat
gccacgacccagttaatccaatccagcattggaaacaacatcaacagtggcaatacggag
atgaacgagaaacactggaagccatccatccagcaaaagcaggaggtcccggccttgcag
tacaacatcatggaacaaaataaattaaataaagattatcgagttactgacacaagtatt
cccgccacaatcccttacaaccagtcgcatgatcagagcacagctggctcgtacaacagt
tcagatagaggcagcaacacttcagggagtcaaggtcacaagaaatcccgaactccaaaa
attccaaaacagactacgctgaactgggcagacttgcttcctccacctcctgccaaccca
ccaccatgtagaagcaatgaagagtacaccatgtcaatggaagagagctatgacccagaa
atgaagtgccccgtgcccccatccagaatgtacctgcaggacgagcttgaggaagatgag
gaggatgaagaggaggaaattgagaggggtcccactccacctatcaggggggctgcctcc
tccccagcagccgtgtcctacagccaccagtcaactgccacgctcaccccctccccacta
gaggagctgcagcccatgctacaggaatgccaggaggaaatggcccgcacacagcaccag
catgacaggaggcgccatccagtcagtcctgcacctcctccaaggcccatctctccacca
cacacatacggttacatatctggacccctagtatcggatatggacacagacgcccccgac
gaagaagcagacgaggcagatgttgaggtcgccaggatgcactcaaggaggctgctgctg
cgagggttggagcagactcctgcctccagcgtgggagacctggagagctctgtaacaggc
tccatgatcaatggttggggatcagcctctgaggaagacaacgcttctagcgggaggtcc
agtgccgtcagttcttcggacggctcattcttcaccgatgcagactttgctcaggcagtc
gcagctgcagcagagtatgctggcctcaaagtagccaaatattcaatgccggatgctgct
agaggccgcagacattatatgaaccccaacagtcatagacccacaagtcctgtctctaca
gacagcaacatgagtgctgctgtcgtgcagaaaacacgacctgccaaaaaacagaagcac
ccacctgcgcatctccgtaaagatgtttacacagaagacctgcctcctcccccattgcct
ccccctgctattaagtcccccacccatcagacaaaatctctattggaagggcgccctatg
atgtcatccaaactggcacctgcagagcaaaggggcgaccggtcagcagagaggagaggt
ggaaactaccccagacagcactcagagcgtacaagctcaacagaatgcagagagtcccag
gaacggcagagggaaagcaaatcacgaggaagcaggtcggcaaggcatgagggcgtgcca
ggcaaggctcgtcagcacccaggccctgaggatatcctgccatacagccggcccacattt
cccacagcacataatcccagagatcccagttcctccagttccatgtcatcaaggggttct
ggggggagacgacgagcagatcagactagtgcaggacgaaggaatccttcagatgccgga
ttgcaagggatgggaacctttgagcaagaagatgatgagctagagggagcagaaagctga
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integrated database retrieval system
