Polyodon spathula (Mississippi paddlefish): 121327941
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Entry
121327941 CDS
T07273
Name
(RefSeq) LIM domain only protein 7-like
KO
K06084
F-box protein 20
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121327941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121327941
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121327941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
121327941
NCBI-ProteinID:
XP_041128239
LinkDB
All DBs
Position
15:complement(30721194..30798763)
Genome browser
AA seq
1106 aa
AA seq
DB search
MEWRENSDINCDLAFAEAQRWVEEITRKQFGSNDFRPALDNGVLLCDLINKIKPGIVKKV
NRLSTPIAGLDNINLFLKACGRLGLKEAQLFHPGDLQDLSSRVTVKHEETNRLKNVLITI
YWLGRKAQTDTVYNGPYLNLKAFEGLLGTVLSKALEDCGSLKRSGRDSGYADSWYTDRGE
LLPLPASHRRDNSLDSLDSVGSRSACIASGATLKGSSEGCGSDLSESDSPFSMTENKDSM
SYRRIAVVEPKSSTQFNQFLPSKSSQSGYVPAPLRKKRVDRNEDNRRSWANPTFTESDGS
FSRSKSMSDVSEEAVANRQIRFEELQKIKSQLQEQDQQWQNDLTKWKNRRKSFTSDLLKK
KEEREQIDQTVGRRVKTFKEMQEERQDREQGIQSTEPRATISRSLYASNEDVFTDEKPMS
KTLHERSYTVEVDTPYSSQNSEVTRSTPAYHPQQDNATNTATTCTSKAAQSNSSVSKAAG
SQHTSQSPSEEQSSVSLYTHNSMDTKPGVARVSASLPRSYHRPDSTLLTSIIAPRPFGTQ
SNSVSSLPRVVAMESAHSQYNGDLDSASQKPCSTSRCSQVMKMEDDGCSQSSSVLSSTEE
ERTPSLKQVPSAQPRGELTSSHGIESNPGRPTSSAKTQYVTSTSTSTTKLPEAKVTTQEQ
YSNMRISLNQKSNSGQDFGFTPTWGSAGVFVKSIESGSPSELCQMQVADDILTVNGLKVS
DMDSQWKESMDTSVKHGTVVMDIGRYGKNSSAEKVIHANSRDCTAESSEKTTKADVNRQP
VNDVGSKGMNGGFREESVTVRHKESEPISLKNLQRRSQFFEQGGAESAISDLQVPSISTS
SSRWAWDPEEERKRQEKWQKEQDRLLQEKYKQEQEKLNEEWLRAQQEAEKESSKYYEEEY
KILKVNTPISSSRQGSTSRDDQSVEEALRQEEEEEQHLQQQERARRQHEEEEQERRRCQE
EQHQQRLEEEEERRCEEAEAHRQQAELRRQRDEEQRRQEWERRQKEEEQTRREELRRKQE
EEEEERKRQTAAAAEKHRREMERARQEQQHWPGESYEFSKILPDTSEFAVSKRAKSKSTS
ELDVHTDTQGKSALEDVYKSREPCIS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggagtggagagagaattctgatatcaactgtgatttggctttcgctgaagctcagcga
tgggtggaggagatcacaagaaaacagtttggaagtaatgattttcgacctgcgctggat
aatggagtcttgctgtgcgatttgatcaacaagattaaacctggcattgtaaagaaggtc
aatagattgtctacaccaatcgctggcttggacaacattaatctgttcttgaaggcttgt
gggaggctaggcttgaaagaagctcaattgtttcatcccggagatctacaggatttatcg
agccgtgttactgtaaagcatgaagagacaaacaggctaaaaaatgttttgatcacaata
tattggctaggtcgaaaagcacagactgatactgtttataatggaccttacctaaattta
aaagcctttgagggattattgggaacagttttatcaaaggcgcttgaagattgtggcagt
ttgaaacgcagtggcagagacagtgggtacgctgatagctggtacacagacagaggggag
ctgctaccccttccagccagtcacagaagagacaattctttagatagcttggactcggtg
ggatcaaggtcagcatgtattgcttcaggtgcaactttgaaaggcagcagtgagggttgt
gggagtgacctgtctgagtcagactcaccattcagcatgacagaaaacaaggacagcatg
tcatatcgccggattgctgtggtagaaccaaaaagctccacgcagtttaaccagtttcta
cccagtaaaagcagccagtcaggatatgtaccggccccactgaggaaaaaacgggttgat
agaaatgaagacaataggcggagctgggcgaatcccacgttcacagaatctgacgggtcc
ttctcaaggagtaaatctatgagtgatgtaagcgaagaagcagttgcaaaccgccagatt
cgatttgaagaattacaaaaaatcaaatctcagttacaagagcaggaccagcagtggcag
aatgatctgacaaaatggaaaaatcgtcgtaaaagcttcacttctgaccttttaaagaag
aaagaagagagagagcagatagaccagacagtcgggagaagagtaaagacctttaaagaa
atgcaggaggaaagacaggacagagagcaggggattcagagcaccgagccgcgtgcaaca
atcagcaggagcttgtatgcctccaatgaagacgtgtttactgatgaaaagcccatgtcg
aaaaccctgcatgaaagaagttacacggtcgaagtggatactccgtacagttcccagaac
agtgaggtgactcgttctacccctgcttatcatccacaacaggacaacgctaccaacaca
gccaccacctgcacaagcaaggcagcccagtccaacagcagtgtcagtaaagctgctgga
tcccagcacacatctcaaagcccgtcagaagaacaaagctctgtttctttgtatacacac
aattcaatggataccaaaccgggggtagctcgggtttcggcttctctccccagaagctac
cacagacccgatagcactctactgacctccattattgcaccgagaccgttcgggacacag
tcgaacagcgtttcttctcttcccagagttgttgctatggaaagtgcacatagccagtac
aatggggacctggacagcgcttcccagaagccttgcagcaccagcaggtgcagccaggtc
atgaagatggaagatgatggctgctcccagtcaagctctgtgctgagcagcactgaggag
gagaggactccatctctaaaacaagtaccttctgcacagcctcgaggcgagctgacaagc
agccatggcattgaatcaaatcctggtcgtcccaccagctctgcaaaaacccagtatgtc
acaagcaccagcacaagcacaacaaagttgccagaagccaaggtcaccacacaggaacag
tacagcaacatgagaatcagtctgaaccagaaatcaaacagcggtcaggactttggcttc
actcccacctggggcagcgctggtgtctttgtgaagtccattgagtcaggcagcccatct
gaactctgccagatgcaggtagctgatgacatcctcacagtcaatggcttaaaagtgtct
gacatggacagtcagtggaaagaaagtatggacacatctgtgaaacatggaaccgttgtg
atggacatcggtagatatggcaagaatagttcagctgaaaaagtaatccacgccaactcc
agagattgtactgctgaatcttcagagaagaccacaaaagctgatgtcaacagacagcct
gtaaatgatgttggatctaaaggaatgaatggaggattccgtgaagaatcggtgacagtg
agacataaagagtccgagccaatttctttgaaaaacttacaaagacgatcacagtttttt
gaacaaggaggagctgagtctgccatatctgatttgcaggtcccttccatcagcacatcc
tctagccgctgggcctgggacccagaggaagagagaaaacgacaggagaaatggcagaag
gaacaggaccgtttgctgcaggagaagtacaaacaagagcaagagaaactaaatgaagag
tggctgcgggcacagcaagaagctgaaaaagaaagctccaagtactatgaagaggaatac
aagatattgaaagtgaatacccccatctcttcttccagacaggggagcacctctcgggat
gaccaaagtgtagaggaggccttgagacaggaggaagaagaggagcagcacctccagcag
caagagagggcaaggcgacagcatgaggaagaggagcaagagaggaggcgatgccaagaa
gagcagcaccagcagcgtttggaggaggaggaggagaggagatgtgaggaagcagaggcg
caccggcagcaagcagaactacggagacagagggatgaagaacagaggcgccaggagtgg
gagaggaggcaaaaagaggaggagcagacacgcagggaggagctcaggcgaaagcaagaa
gaggaggaggaagagaggaagcggcaaacggcagcagcagctgagaaacatcgtcgagag
atggagagagccaggcaggaacagcagcactggcctggtgaatcctatgaattttctaaa
atccttcccgatacatcagagtttgctgtttcaaagagggccaaatcaaaatccacttca
gagcttgatgtacatactgatacccagggtaagtctgctttggaagacgtgtacaaatca
agagaaccctgtatttcatga
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