Polyodon spathula (Mississippi paddlefish): 121328001
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Entry
121328001 CDS
T07273
Name
(RefSeq) WD repeat-containing protein 3-like
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121328001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pspa03009
]
121328001
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121328001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_2nd
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Utp12
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
DSE1_N
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_NOL10_N
Beta-prop_WDR41
Beta-prop_VPS8
Beta-prop_DCAF4
Beta-prop_SPT8
ASA1
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_Aladin
WDR54
Beta-prop_EIPR1
CFAP251_N
Beta-prop_Vps41
Beta-prop_HPS5
WD40_like
Beta-prop_ACSF4
Beta-prop_RSE1_2nd
Beta-prop_WDR35_TULP_N
PAC11
VPS11_N
Utp21
Motif
Other DBs
NCBI-GeneID:
121328001
NCBI-ProteinID:
XP_041128351
LinkDB
All DBs
Position
15:20708775..20726826
Genome browser
AA seq
937 aa
AA seq
DB search
MGLTKQYLRYAASAVFGVIGSQKANIAYVTLRGGERGRYVAVAACEHVFVWDIRKGEKVL
ILQGNKQEVTYLCPSPDGIHIAVGYEDGSIRIFSLLNGESNVTFNGHKAEVTVIKYDHLG
ARLVSGSKDTDVIVWDVINECGLYRLKGHKDAITQALFLKTKNLLVTSSKDTFVKWWDLE
AQHCFKTMVGHCSEVWGLVLLSDEKRIISGSADSELRAWDINYLEAGKEVGEPEEKKTKG
LLGHSEEPEGEVDENPEERILSCQKAGSILREGRNRVVSMATDLNSKILACHGTDTILEV
FSVLSDNEINRIMERKLKKAKKKAKQAGGDEEDAVVDRSLQDEIQRISSIKASAKIRSFD
CFLSPNGDLKVALLLQNNTIEAFVLKTAGKTSECTKTARLTIGGHRTDVRTLAFSSDNIA
VLSASAETVKVWNRSTLQVIRTMACEYALCSLFVPGDRQIIIGTKNGKLQIFELSSGILL
ETVDAHEGALWSISLSPDQRGIVSGGADKMVKFWEFELVKDEDSVQNSKRLTVNHKRTLQ
LDEDVLCVRYSPNQRLLAVSLLDCTVKLFYTDTLKFFLSLYGHKLPVLCLDISHDSALIA
TGSADRNVKIWGLDFGDCHRSLFAHDDSVMFLQFVQKTHLFFTAGKDKKIKQWDADKFEH
IQTLEGHHREVWCLAVSPSGDHIVSSSHDKSLRLWERTREPIILEEEKEMQREAEFEESL
GKGDEPVVPGETTGESGLAGKKTIETIKAAERIMEALELYREESKKLEEHKTACEIAGKQ
LPPPTMSTILIAFGNISPSLYVLAVIRKVKSSELEESLLVLPFSYVPDLLTLFNEYIQNG
LEVELICRCLFFLLRIHFGQITSNQMLLTVMDSLRTNTISRVKKIRDVLGFNMAGLQFLQ
REIESKEDVTFFADATDRFEDKKRKRKKRERAILAVA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgggactgacaaagcagtatttgcggtacgccgccagcgcagtttttggtgtgatcggc
agtcagaaagccaatattgcctacgtaaccctaagaggaggagagaggggacggtatgtg
gcagttgcagcctgcgaacatgtctttgtatgggatatacgtaaaggagagaaggttcta
attctccaaggtaataagcaggaggtaacttatttatgcccttccccggatggtattcac
atagctgtgggttatgaggatggatcgatccgtattttcagcctcctcaatggggagagc
aacgtcaccttcaatggacataaggcagaagtcactgtcatcaaatacgatcatcttggc
gcgcgactggtgtcgggatcaaaggatacagatgtgattgtgtgggatgtgatcaatgag
tgtggcttgtaccgactcaaggggcacaaagatgccatcacacaggctttgttcctgaag
accaagaacctcctagtaacaagctccaaagacacttttgttaagtggtgggatctggag
gcgcagcactgttttaagactatggttggacattgcagcgaggtgtggggattggtccta
ttgagtgatgagaagagaatcatctctggctcagctgacagtgagctcagagcctgggac
atcaactatctagaggcgggtaaagaggtgggggaaccagaagaaaagaaaacaaaagga
ctgctgggacactctgaggaacccgagggggaagtggatgagaaccccgaggagcgcatc
ttgagttgtcagaaagctgggtccatcctacgggaaggaagaaacagagtggtttccatg
gcaacagatctgaattcaaaaattttagcttgtcacggaactgacactatattggaggta
ttcagtgtactgtcagataatgagattaacagaataatggagaggaaactgaagaaggca
aagaaaaaggcaaaacaggctggaggagatgaagaggacgctgtggtggacaggtctctt
caggatgagatccagagaatttccagcatcaaggcttctgccaagatcaggtcgtttgac
tgtttcctgtccccgaacggagatctaaaggtggcgttactgcttcagaacaacacaata
gaagcattcgtcctgaaaacagccggcaagacttctgaatgcaccaagactgctcgcctt
accatcggtggacaccgcactgatgtccgcaccttggccttcagctcagataacattgct
gtgctttctgcctcggcggagactgtcaaagtctggaacagatcaaccttgcaagttatc
agaacgatggcttgtgaatatgcgctttgctcactttttgttcccggagacagacagatc
ataataggaaccaagaatggaaagctgcagattttcgagttgtcctctggaattctgttg
gagactgtagacgcccatgaaggagcactgtggtcgatttctctttctccagaccagaga
gggattgtgtccggaggcgcagacaagatggtcaaattctgggagtttgaacttgttaag
gacgaggactctgtccaaaacagtaaaagactgacggtgaatcataagcgcaccttgcag
ctagacgaggatgtcctgtgtgttcgctacagtcctaatcagaggctgctggctgtgtcc
ttgctggactgcactgtcaagctgttctataccgatacacttaagtttttcctttctctc
tatggacacaaactgccagtgctgtgcttggatatatcccacgacagtgcattgatagcc
actggttcagcagatagaaatgtaaagatttggggtctggattttggagactgtcatagg
tcactttttgctcatgatgacagtgtcatgttcctgcagtttgtgcagaaaacgcatctc
tttttcactgctggaaaagacaagaaaataaaacagtgggatgctgacaagtttgagcac
atccagacactagagggtcaccatcgagaagtgtggtgcctggctgtgagtcccagtgga
gatcacattgtgtcgtcatcacatgataaatcgctccggctgtgggagagaacaagagag
ccaatcattctagaagaggaaaaggaaatgcaaagagaggcagaatttgaagaaagtttg
ggcaaaggcgatgaaccagtggttcctggggagaccacgggggagtctggcctggctggg
aagaagaccattgaaaccattaaagctgctgaacgaattatggaggccttggaattatac
agggaggaaagcaagaagttggaagaacacaaaactgcttgtgaaatagcagggaaacag
ttacctcctcctacaatgagtacaatcctaatcgcctttggaaacatctctccctctctc
tatgtactggctgttatcagaaaagtaaaatccagtgaattagaagagtctcttctagtc
ttgcctttctcttacgttcctgacctcctcactctcttcaatgaatacatccagaatggg
ctggaagttgagctgatctgtcggtgcctctttttcctactcaggatccactttggacag
atcaccagcaatcaaatgctattgacagtgatggacagtctcaggacaaatacgatttct
agagtaaagaaaattagggatgttcttggattcaatatggcaggcctgcagttcttacag
cgtgagattgaaagtaaagaagacgtgaccttctttgctgatgccacagaccggtttgag
gacaagaaaaggaaaagaaagaaaagggagagagccattcttgcagttgcttaa
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