KEGG   Polyodon spathula (Mississippi paddlefish): 121328090
Entry
121328090         CDS       T07273                                 
Name
(RefSeq) collagen alpha-1(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04382  Cornified envelope formation
pspa04510  Focal adhesion
pspa04512  ECM-receptor interaction
pspa04518  Integrin signaling
pspa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121328090
   04518 Integrin signaling
    121328090
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121328090
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121328090
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    121328090
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pspa04147]
    121328090
   00536 Glycosaminoglycan binding proteins [BR:pspa00536]
    121328090
Exosome [BR:pspa04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   121328090
Glycosaminoglycan binding proteins [BR:pspa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121328090
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 121328090
NCBI-ProteinID: XP_041128508
LinkDB
Position
15:11634042..11713875
AA seq 1651 aa
MLFLNCAWLLVIAVVASGIHKTEAAGCSDCGKCDCSGVKGQKGETGFPGLQGPMGFPGMQ
GPEGPHGPMGPSGDVGVPGLSGLKGIRGPAGIPGFPGTPGLPGIPGQDGPPGSPGIPGCN
GTKGDRGFDGKPGMPGFSGSPGTPGLEGQKGEPGEINGIFQLKGEKGNPGYPGNQGAFGA
PGLVGPIGPPGLQGPVGNPGPPGPKGEKGDRLTFQGQKGDKGEPGPRGSPGIPPEVSGPT
QVTVIPGNKGDRGGVGPKGEPGICLGGVKGEPGKPGPRGKPGKDGEHGVPGSAGTPGTPG
IPGLRGQDGEKGEKGETGLQGPPGTVVTNTGEVVVYGKKGESGPRGFPGLEGGKGKQGFP
GVQGPPGPPGLSLPGPPGPAGFPGESGQKGDQGNPGLSWSGEKGQDGAQGPPGPPGPPGS
FGCKDPECLPGPPGFPGEMGQKGDRGDTCFHCESFGPPGLPGPQGPAGQQGYPGVTGTKG
EKGYQGSPGLEGAPGVPGTPGLYGSPGAKGEPGDVIFGPNLKGDKGQAGIPGPTGTPGFD
GAPGRDGLPGVPGPKGEPATIGFKGDRGPAGDPGFPGTQGERGPPGPPGFGAPGLPGEKG
NQGVPGHSGLPGSPGIKGEPGKSMIEIGPQGPPGIPGIPGQPGSQGDMGPQGIPGVPGFQ
GAKGDQGQPGVGFPGPPGTKGHPGLPGPVGQPGSPGLDGKEGESGRPGPPGQKGDPGIGL
PGPKGYPGPQGVDGFPGGKGNPGLPGIPGAEGHTGPPGPPGLKGNQGPPGLQGVRGPPGE
PGAGDPGPPGPQGPPGPLGPLGSQGLKGEKGYPGIPGLDMPGPQGEKGIQGSTGIPGIVG
SPGQPGPAGREGLSGPPGPKGEMGVMGTPGISGSPGFQGDPGLPGSRGDPGHIGLTGYQG
ETGAKGEAGDQGIRGPPGTMSKEELMHMIGPKGDKGFTGVPGEAGVKGYRGIPGSPGMPG
KDGEPGLPGQPGLKGDPGSTGLPGHDGLPGQKGSTGQMGLPGSQGAKGTKGLMGSPGLKG
YPGTPGEKGLRGDPGEPGIGKPGAEGEKGQPGPPGFPGIPGDKGVKGVEGMPGMPGVPGP
KGDVGSPGYPGSPGFPGQKGIDGLPGTPGQPGFQGRPGEPGLQGAPGPAGTKGEPGLDGI
PGLPGEKGDQGSPGRGFPGLPGVLGEKGNKGDAGLPGLPGSPGIPGVKGDQGQPGYPGQQ
GPSGFQGPPGEAMEGPKGESGPPGLPGPLGSPGPQGPPGIPGNIGGKGEKGTHGLPGLPG
LQGLKGERGVPGIPGNAGLPGLNGQKGEMGAQGVPGFPGMKGATGHLGYKGETGERGFSG
SKGIDGPPGPPGPTISVKGERGLPGPQGPQGPPGLLGYPGPKGQQGVSGIIGLPGQDGIP
GFDGRPGQKGEHGPVGPPGPRGYPGSPGPDGLPGPAGIPGPSSIAHGFLVTRHSQMVVVP
SCPVGTTKIYDGYSLLYVQGNERAHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRND
YSYWLSSPEPMPMNMAPITGESIRPFISRCSVCEAPGMVIAVHSQTIQIPHCPSGWESLW
IGYSFVMHTSAGAEGSGQALASPGSCLEEFRSTPFIECHGRGTCNYYANAYSFWLATIEN
GELFNKPVSATLKAGDLRTHISRCHVCMKKT
NT seq 4956 nt   +upstreamnt  +downstreamnt
atgctgtttctaaattgtgcttggctgctagttatagcggtcgtcgcaagtggcatacat
aaaacagaagctgcggggtgcagtgactgtggaaaatgtgactgcagtggagtgaaagga
caaaagggtgagactggctttccagggttacaaggtccaatgggattccctggaatgcaa
ggccctgaggggccacatggaccaatgggccccagcggtgatgttggagtcccgggactc
tctgggctgaaaggaatcagaggccctgcaggaatacctggatttcctggaaccccaggc
ctaccaggtatccctggtcaagatggtcctccgggttcaccgggaatcccaggatgcaac
ggtacaaagggtgacaggggcttcgatggcaaacctggaatgccaggattctcaggcagt
ccaggtactcctgggctagaaggacagaagggggagcccggtgaaataaatgggattttt
caactcaaaggtgaaaaaggaaatccaggataccctggtaatcagggtgcatttggagca
ccaggacttgtgggtccaattggcccacctggactgcaaggacctgtgggcaatccaggt
cctcctggccccaaaggtgagaagggtgacagattgaccttccaaggtcaaaagggagac
aaaggcgaaccaggcccaagaggctctcctggcatacccccagaggtttccgggcctaca
caagtaacagttataccagggaataagggtgaccggggtggggtcggtcccaaaggtgaa
ccaggtatttgccttggaggcgtgaaaggtgaacctggaaaacctggccctagaggtaaa
ccagggaaagatggagaacatggagtaccaggaagcgcgggtaccccaggtactccaggt
atcccaggcttaagaggacaggacggtgaaaagggggagaaaggtgaaactgggcttcaa
ggtcctccgggaactgtggttacaaacactggtgaagttgttgtttatggaaaaaagggt
gaatctggaccacggggcttcccagggctagaggggggaaaagggaagcaaggttttccc
ggtgtacaaggaccccctggccccccaggtctaagtctcccgggaccccctggtccagct
gggttcccaggggagtctggtcagaagggagaccaaggaaatcctgggttgtcttggtct
ggagaaaaggggcaagatggagcacaaggaccacctggaccaccaggcccacctggatcc
ttcggatgtaaggatccagaatgcctccctggtccacctggatttccaggagaaatgggt
caaaaaggtgacagaggagatacatgtttccactgcgagtcgtttggtcctcctggactt
cctggcccacaaggaccagcagggcagcaaggttatccaggggtaactggtactaagggt
gaaaagggttatcaaggaagtcctggtcttgaaggtgcacctggtgttcctggtactcct
ggcttatatggctcccctggtgcaaaaggggagccaggagatgttatctttggaccaaat
ctaaaaggagacaagggtcaggcggggatccctggtcctactgggactccaggttttgat
ggggcaccaggaagggatggtcttcccggggtcccaggcccaaaaggcgagccagccacc
attggtttcaaaggggatcgtggtccagctggagaccctggtttccctggaactcaagga
gaaaggggtcccccaggtcccccagggtttggtgctcctggtttacctggagagaaagga
aaccagggagtcccggggcattcggggttgcctggctctcccggaattaagggtgaacct
ggcaaaagcatgattgaaattggaccacaaggcccacctggaatccctggaataccaggg
cagccaggctcccagggtgatatgggccctcagggaatccctggcgtccctggttttcaa
ggagcaaaaggtgaccagggtcagccaggagtgggctttccagggccacctggaaccaaa
ggacacccggggttgccagggccagtggggcagcctggctcccccggcctcgacgggaaa
gaaggtgaatcaggacgccctggcccacctgggcagaagggtgaccctgggattggtctt
cccgggcccaaaggatatccaggccctcaaggtgttgacggattcccaggagggaaagga
aacccagggcttcctggcattcctggagctgaaggtcacactggcccgcctgggcctcca
gggttaaaaggtaaccaggggcctccaggtttacaaggtgtcagaggcccccctggtgaa
ccaggtgctggtgatcctggcccacctgggccccagggtccaccaggtccactcggccct
ctaggatcacaggggttaaagggtgaaaaaggctacccaggcatccctggactggacatg
ccagggccccaaggagaaaaaggcattcagggttccactggcattccaggaatagttggg
tctccaggacaacctggcccagcagggagagaaggactttcagggcctccaggtcctaaa
ggagagatgggagtgatgggcacacctggtatatctgggagccctggtttccaaggtgac
ccaggtttgcctggctcaagaggtgatccaggtcacattggcctgactggatatcagggt
gaaacaggagctaaaggagaagcaggggaccaagggatacggggccctccagggaccatg
agcaaggaagaattaatgcacatgataggaccgaagggagataaaggattcacaggtgtt
ccaggagaagccggagtgaaagggtatcgaggaatcccaggtagtccaggaatgccagga
aaggatggagagccaggattgcctgggcaaccaggacttaaaggtgacccaggttctact
ggactccctggtcatgatggtttaccgggacagaaaggatccactggtcaaatgggctta
cctggttcacaaggagcaaaaggtactaaaggtctgatgggttcacctggcttgaagggg
taccctggaacgcctggtgaaaagggtctaaggggcgatcctggagaaccaggtatcgga
aagccaggagctgaaggtgaaaagggtcagccaggcccaccaggtttccctggtatccca
ggtgataaaggtgtgaagggagtagaaggtatgccgggaatgcctggtgtaccaggtcct
aaaggagacgttggatcaccagggtatccaggtagtccaggatttcctggacagaaagga
attgatggattacctggcactccagggcaaccaggatttcaaggaaggccaggcgagcca
ggccttcaaggggctcccggccctgcaggaactaaaggtgaacctggactggatggaatt
cctggcctgcctggagagaagggtgaccaaggttcaccaggtagaggttttccaggactt
cccggtgttcttggagagaaaggtaacaaaggagatgcaggcttacctggtctcccaggt
agtcctggaatcccaggtgttaaaggagatcaagggcagccaggttatccagggcagcaa
ggcccgtctggtttccagggtccacctggggaagcgatggaaggtccaaaaggtgaaagc
ggaccgccaggattgcctgggcctttaggttcacctggaccccaagggccacctggaatt
ccaggaaatattggaggcaaaggggaaaaaggaacccatggcctacccgggctgcctgga
cttcagggactcaagggagagcgaggcgtgcctggaattcctggaaatgctggacttcct
ggtctcaatggacaaaagggtgaaatgggggctcaaggagtgccagggtttccaggaatg
aaaggtgctacaggacatttaggatacaaaggagaaactggtgaacgaggtttttcgggt
tctaagggtattgatggccctcctggtccaccgggacctacaatttcagttaaaggagaa
cgtggcctgcctggtcctcaaggtccacaaggaccccctggtctattaggatatccagga
cccaagggacaacaaggtgtgagtggaattattggtttgccagggcaggatggaattcct
gggtttgatggtaggcccggacagaaaggagaacatggaccagttggcccaccaggccca
agaggatatccaggctcaccgggccctgatggcttgccaggaccagcagggataccagga
ccatcgtccatagctcatggcttccttgttacaagacacagccagatggtagtggtgcct
tcatgtccagtaggaacaacgaaaatctacgatggctattctctcttatatgtgcaaggc
aatgaaagggcacatggccaagacttaggtactgctggaagctgccttcgcaagtttagt
cccatgccatttttgttctgtaacattaacaatgtttgcaactttgcatcaagaaatgac
tattcctattggctgtcttcccctgaaccaatgccaatgaatatggctcccattactggt
gaaagtatcaggcctttcattagcagatgctcagtttgtgaagcaccaggcatggtaatt
gcagtccacagccagacaatccagatcccacattgtcccagtggatgggaatccctgtgg
attggctattctttcgtcatgcacactagtgcaggcgcagagggctctggccaggccctg
gcctctcctggctcttgtctggaagagttccgcagcactcccttcattgagtgccacggt
cgtggaacctgcaactactatgccaatgcctacagtttttggctagctactattgagaat
ggtgaactgttcaacaaacctgtctctgctacacttaaggcaggagatctacggacccac
atcagccgttgtcatgtctgtatgaagaagacataa

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