Polyodon spathula (Mississippi paddlefish): 121328148
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Entry
121328148 CDS
T07273
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pspa03037
]
121328148
Cilium and associated proteins [BR:
pspa03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
121328148
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
TPR_19
TPR_6
TPR_14
TPR_7
TPR_16
CFAP70_TPR_C
ANAPC3
RMD1-3
TPR_9
TPR_11
TPR_17
TPR_10
ARM_TT21_4th
TPR_CcmH_CycH
DUF6340
ARM_TT21_5th
TPR-S
CNOT10_TPR
TPR_YpiA_C
TPR_15
ARM_TT21
RPN7
CFAP70_mid_TPR
RNPP_C
MIT
ARM_TT21_C
TTC22_N
TPR_24
NatA_aux_su
DUF6584
HAT_PRP39_C
TPR_INTS8
ARM_TT21_2nd
SHPRH_helical-1st
SUCH1_C
DUF5588
MYCBP_helical
NBD_SMAX1
MJ0235
Motif
Other DBs
NCBI-GeneID:
121328148
NCBI-ProteinID:
XP_041128597
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Position
15:complement(6271150..6297135)
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AA seq
828 aa
AA seq
DB search
MLQKLKMMEHVHLAAEDEDDLYSGYNDYNPTFDTEDLENDVGFQQAVKTSHGRRPPMTSK
IPGSAVARPMGTAFGARMPLVSSLGRPVTGAVQDGVARPMTAVLAAGYSSAVIRGSAFDP
LGQSKGPAPPLEGKNEDTPEEKIKHLEKKVNQLIEDSCMAHSHGDLELSLEKAKEAGRKE
RVLVRQREQTASADHINLDLTYSVLFNLANQYADNEMFAEALNTYQVIVKNKMFSNAGRL
KVNMANIYFKQRNFPKAIKFYRMALDQISNAHRDIRIKIMQNIGVVFVKMGQYSDAITSF
EHIMSESPNIKTGFNLILCYFAVGDRDKMKKAFQKLITVPLGVDEDDKYIPSNDDPQTNL
VIEAIKNDQLRQMERERKALAEKYIMTSAKLIAPAIETSFAAGFDWCVEMVKTSLYVELA
NDLEINKAITYLRQKDFNQAVETLKMFEKKDSRVKSAAATNLSFLYFLEKEYGQAERYAD
LAMNADRYNPAALINKGNTVFVNGDYEKAGEFYKEALRNDSSCTEALYNLGLTYKKLKRL
EEALDCFLKLHAILRNSAQVMFQLTSLYESLEDPNQAIEWLMQLISVAPTDPQALAKLGE
LYDNEGDKSQAFQYYYESFRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERAALIQPTQV
KWQLMVASCYRRSGNYQKALETYKDIHSKFPENVECLRFLVRLCTDMGLKEVQEYATKLK
KVEKMKEIREQRVRSGRDGSGRGHRGGSASSDSGHSSRGTSAKTERLNAKLRSLPGANEP
YEASSRDIDASYVDPLGPQIERPKTATKKQTDEDDFADEELGDDLLPE
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaaaagttaaaaatgatggagcatgtacatttagctgcggaagacgaagatgat
ctatattcagggtacaatgactacaatccaacatttgatactgaagatctggaaaatgat
gttggtttccaacaagctgtaaagacaagtcatggaaggagacctccgatgacctccaaa
attccaggcagtgccgttgcaaggcccatgggcactgcatttggagcaaggatgccacta
gtctcctctttgggaagacctgtgacaggtgcggtgcaggatggagttgctcgtccaatg
actgcagtgctggctgctgggtattcctcagctgtaataagaggttctgcatttgatcca
ctgggtcagtcaaaaggtcctgcacctcctttggaaggcaaaaatgaagatacacctgaa
gaaaaaattaagcatttggagaagaaagtcaaccagttaatcgaagacagctgcatggct
cacagccatggagatcttgaactgtctttggaaaaggcaaaagaagctgggagaaaagaa
agggttttggtgcgacagcgtgagcaaactgcatctgcagatcacattaatttggacctt
acatactcggtcttgtttaatttagcaaaccagtatgcagacaatgaaatgtttgctgaa
gcactgaacacataccaagtgattgtgaaaaacaagatgttcagtaatgcaggacgatta
aaagtaaacatggcaaacatatacttcaaacagagaaatttcccaaaggcaatcaaattc
tacagaatggcattagaccaaatttcaaatgcccacagggatatacggattaaaataatg
cagaacattggagttgtttttgtaaagatgggccagtattctgatgcgattacttccttt
gagcatatcatgagtgaaagccctaacataaaaacaggattcaacctcatcctttgctac
tttgctgttggagatcgtgacaagatgaagaaagctttccagaaactgatcactgttcca
cttggtgttgatgaggatgacaaatacatcccttctaatgatgatccacaaactaaccta
gtgattgaagcaattaagaatgaccaactgcgacaaatggaacgagagagaaaggctttg
gctgagaaatacatcatgacttcagccaagttaattgcaccagcaattgaaacttctttt
gcagcaggatttgactggtgtgtagaaatggtaaaaacctccttgtatgtggaactggca
aatgacctggaaatcaacaaagccatcacctatctgaggcaaaaagacttcaatcaggca
gtggaaacattgaaaatgtttgagaaaaaggacagtcgtgtgaaaagtgcagctgctact
aacctctcattcctttattttctggaaaaagagtatggacaagcagaaagatacgcagac
ctggctatgaatgctgatagatataaccctgctgcgctcatcaacaaagggaacacagta
tttgtaaatggtgactatgaaaaggctggagagttttacaaagaagccctgagaaatgac
tcttcctgcactgaagctctctataacttgggactgacctacaagaagctgaagagactt
gaagaggctctggactgcttcctaaagctccatgccatcctgcgaaacagcgcccaggtt
atgttccagctaacaagcctgtatgaaagtttagaggatcctaaccaggctattgagtgg
ctgatgcagctcatcagtgtagctccaacagatccacaagcactggctaaactgggagaa
ctgtatgataacgaaggagacaagtcccaggccttccagtactattatgagtcttttagg
tatttcccttcaaacattgaagttattgagtggcttggggcctattacattgatacacaa
ttctgtgaaaaagcaattcagtactttgaaagagcagcccttattcagccgacccaagta
aaatggcaactaatggttgccagctgctacagaagaagtggaaactaccagaaagcactg
gagacctacaaagacatccacagcaaatttcctgaaaatgttgaatgtttgcgattcttg
gttcgcctgtgcaccgacatgggattaaaagaagttcaggaatacgctaccaaactgaag
aaagtggagaaaatgaaggagataagagagcagcgtgtgaggtctggcagagatggcagt
ggccgtggccacagagggggcagtgctagcagtgacagtgggcacagtagccgtggcact
agtgccaagactgagcggttgaatgccaaactgaggtctttgcctggagccaatgaacct
tatgaggccagcagcagagacatagatgcctcttatgtcgatccccttggccctcaaata
gaaagaccaaaaacagccaccaagaaacagacggatgaagatgactttgccgatgaagag
ctgggagatgatctccttccagaataa
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