Polyodon spathula (Mississippi paddlefish): 121328254
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Entry
121328254 CDS
T07273
Name
(RefSeq) transcription factor HES-4-B-like
KO
K06054
hairy and enhancer of split 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03460
Fanconi anemia pathway
pspa04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
121328254
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121328254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121328254
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121328254
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
121328254
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
121328254
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hairy_orange
HLH
Spectrin_1st_PEPL
Motif
Other DBs
NCBI-GeneID:
121328254
NCBI-ProteinID:
XP_041128766
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Position
16:5704221..5705905
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AA seq
295 aa
AA seq
DB search
MPADSMEKSTASPTAGAPAIAAQSPDKPKSASEHRKSSKPIMEKRRRARINESLGQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALTADPTVMGKYRAGFNECMNE
VTRFLSTCEGVNTEVRSRLLNHLSGCLGQMIAMNYPQPAGLQPAHLAQPLHVQLPSAATA
PLNGVSMPGKLSPAEAISPKVYGGFQLVPATDGQFAFLIPNPAFASATTPVIPLYANAPV
AVSASPVRANAAPAVTSPIQGMTSFGLGVSGVSRAVSPMGIVSTGPESESVWRPW
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgacagcatggagaaatccacagcatccccaactgctggcgcgcccgcaatc
gctgctcaatcgccggacaagccaaagagtgcaagcgaacacagaaagtcatccaaaccc
atcatggagaagcgccgcagagcgaggattaatgaaagccttgggcagctcaagacactg
attctggacgcgcttaaaaaagatagttccagacactcaaagcttgaaaaagccgacatc
cttgagatgactgtgaaacacctgcggaacctgcagcgtgcccaaatgactgcagctctc
actgctgatccaacagtcatgggaaaataccgggctggatttaacgagtgcatgaacgag
gtgacccggttcctctccacttgcgaaggggttaacaccgaggtcaggtcccggctcctg
aaccacttgtccggctgccttggtcagatgatcgccatgaactacccacagcccgcaggg
ctccaaccggcccacctagcgcagcccctgcacgtccagctcccgtcagcagcgacggcc
cccctcaacggagtctccatgcccggcaagctcagtccggccgaagcgatctccccaaaa
gtgtacggcggctttcagcttgttcccgcaacggacggacagtttgctttcctgattccc
aaccctgccttcgcgtccgccaccaccccggttattccactctacgccaacgcgccggtg
gcagtcagcgccagccctgtgcgtgccaacgcagcgccagccgtgacgtctcccatccag
gggatgacgtcattcggactcggagtctccggtgtttcccgagctgtcagccccatgggt
atcgtgagcaccggcccggagagcgagtctgtgtggagaccttggtga
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