Polyodon spathula (Mississippi paddlefish): 121328556
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Entry
121328556 CDS
T07273
Name
(RefSeq) probable E3 ubiquitin-protein ligase makorin-2 isoform X1
KO
K15687
E3 ubiquitin-protein ligase makorin [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121328556
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121328556
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121328556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH_4
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_DUS3L
zf-CCCH_3
zf-CCCH_PARP12
zf-C3HC4
zf-RING_UBOX
zf-RING_2
MKRN1_C
zf-RING_5
zf-C3HC4_4
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
121328556
NCBI-ProteinID:
XP_041129217
LinkDB
All DBs
Position
16:34842520..34851599
Genome browser
AA seq
465 aa
AA seq
DB search
MNTKQVTCRYFLHGVCREGSRCLFSHDLTTSKPSTICKFFQKGQCAYGDRCRYDHIKPSA
GRGIGVLGAEGEYSSRPLPPVIPQSCNIAAPLIGGSHIAATGIGGSNFAIPVIGGNSIGI
PILGGSHISAPIIGSNPAETGRRGKKPLVLRDRALCTSDERTPQYRVDDYKTPEPGCWGY
QDEALNIKPHSYLEAIRSGLEDSTAGSSFANPQQLCPYAAAGQCHFGSSCAYLHGEVCEI
CTLQVLHPFDPEQRKAHEKMCMVAFELDMEKAFAVQFSQNKVCSICMEVVYEKASPSERR
FGILSNCNHTYCLPCIRQWRCAKQFENKIIKSCPECRVVSEFVIPSVYWVEDQEEKNRLI
EEFKTGVSKKACKYFDQGRGTCPFGGKCFYMHAYPDGTRAEPETPRKQMSSEGSVRFLNS
VRLWDFIQEREHRGERQHEDEVSELGELFMQLSGADQEASVTSTQ
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaacacaaagcaagtcacctgccggtattttttacatggtgtatgtcgtgaggggagc
agatgtttattttctcatgatttaactacaagcaagccatccaccatctgcaaattcttc
cagaaagggcagtgtgcctatggagaccgttgcaggtatgatcatattaaaccctctgct
ggaaggggcataggtgtccttggggcagaaggagaatacagcagtcgacctcttccacca
gttatcccacaaagctgcaacattgcagcacccctcattggaggaagccacattgcagcc
accggcattggtggaagcaactttgccatcccagtcatcgggggaaacagcattggcatc
cctatcctaggaggaagccacatttcagccccaattattggcagcaacccagcagaaact
gggcgacgtggaaagaaaccactggtgctgagggatagagcactgtgcacttcagatgaa
aggacaccgcagtacagagtagatgactataagacgcctgagcctggatgctggggttac
caggatgaggcattaaacatcaaacctcattcttatctggaagccattcgaagcgggctg
gaggattcgactgctggcagctcttttgcaaacccccagcagctgtgtccttatgcagct
gccggccagtgccactttggaagcagctgtgcttatctgcatggagaggtgtgcgagatc
tgcacgctgcaggtgctccatccctttgacccagagcagaggaaagcacatgagaagatg
tgtatggtggcatttgagctggatatggagaaggcgtttgccgtgcagttcagccagaac
aaggtgtgcagcatctgtatggaggtggtgtacgagaaagcatcgccctcagagagacgc
ttcggaatcctctcgaactgcaatcacacctactgtctgccttgcatcagacaatggcgg
tgcgccaagcagtttgagaacaagatcatcaagtcgtgtcctgagtgccgtgtggtatcg
gagtttgttatccccagtgtgtactgggtagaggaccaggaagagaagaacagacttatt
gaagaattcaaaacaggagtgagcaaaaaggcctgcaagtactttgaccagggaagaggg
acatgcccgtttggtggaaagtgcttttacatgcatgcttatccggatgggacgagagcc
gaacctgagacaccccgcaagcagatgagttcagaggggagcgttcggttcctgaactct
gtgcggctgtgggatttcatccaggagagggagcacaggggcgagcggcagcatgaagac
gaggtctcagagctgggggagctcttcatgcagctctcgggggccgaccaggaagcaagc
gttacctccacacagtga
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