Polyodon spathula (Mississippi paddlefish): 121328591
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Entry
121328591 CDS
T07273
Symbol
stab1
Name
(RefSeq) stabilin-1 isoform X1
KO
K19020
stabilin-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121328591 (stab1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121328591 (stab1)
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Hyaluronan
Cell surface receptors
121328591 (stab1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fasciclin
EGF_3
EGF_STAB1-2
Xlink
FXa_inhibition
EGF_ATRAID_C
cEGF
RIPR_EGF-like_10th
EGF_MSP1_1
RIPR_EGF-like_7th
EGF_TEN
EGF
EGF_Teneurin
EGF_laminin
Motif
Other DBs
NCBI-GeneID:
121328591
NCBI-ProteinID:
XP_041129317
LinkDB
All DBs
Position
16:complement(33857377..33889686)
Genome browser
AA seq
2558 aa
AA seq
DB search
MVFLLVICLILSAEAQEKTAQDSRCDAHNTLQFSTVCTSCAAISRAWCPPGSRRTTQITG
VKGCSYLVDMGEETLTLSGCSHMCEKDIIEHKCCPGFWGPDCMPCPSMSGKPCNWKGTCM
DGVTGNGTCICEAGFSGFACQECKDENVYGPDCQLECDCVNGICSSGIGGNGSCICETGY
TGVRCDQESQLCHGMACGENSVCSEGAGGTTACGCMPGFQKSGQQCLPQDPCAQNVCDHN
ADCVNHGQKKYDCRCKEGYQGDGKVCVPVNPCLTDNGGCPTNSTNCVYESVGKAKCVCKS
GMEGANPSAGCTIKDVCKKDSCDKSAKCVTGLDGMASCVCQKGQISDGTFCYGNIIERIL
ELNTESRHKGKLTSAINMFEKGCELALSKRLFTVFVPASKFTVTGMSEKYLCKLHMIIGL
HVFSDLQDKVFWTLGGEPVHFVADKSFSFQRDQNKTYRILQSDLVAANGIIHIINQPVTN
ISPEHAEDEQDSKKTIEEIIANQHMFNRYRTLLENSEMSQILEGPGPFTVFVPTNEAVDQ
HRDGTIIYLLTDGKKKLQELVKHHIYTSASVTVDRLAAMPQILSMANQIITVNVTSDGRI
VLGDKAVVLNKQDIVASNGIIHVIDGILIPPSIVPILPNRCDVTEYNIIMGQCVDCSSLD
TTSCPSGSTELDKFHKGCEYISSVMNTITNRRGCAKYCNRTVVRHDCCKGFYGPDCKACL
GGFQNPCYEHGTCNDGIQGNGTCSCFPDFKGIACHICSNPNKHGEMCDEDCQCLHGVCDN
RPGSKGVCRINTCAEGYTGELCDRVTKPCGPSGLSQYCHVNAVCDYSDDTRCVCQNGFEG
DGFSCLEINPCQKADRGGCSANARCIYISPGNATCICNEGWSGDGQACVEIDNCLLENRG
GCHDNADCISKGPGQSECVCKKNYMGDGYNCDIVNLCLQSNGGCHSLAKCKPLGDGEREC
LCPEDYGGDGVICYGNILTELASNSNFFSFFQWIKSSSLSNPEGNVTVLVPSESAIKGLK
EELRQFWMRPYMLPFLVRVHFLEGAFTIDDLKQRGAVELSTLNPRTKWEIKNTSGTVMIE
NATVLISDIPAVNGFINIIDKVLIPSLADIPPPPPDLMQVLNQTTSFSLFKEALLHYNLT
QKIDSSQKYTILIPFNKAIEDHFNATGSEELDEDLVRYHVIVEEKLLPGNLRNGIHKSTM
LGSSYQIMFHNNNENQTYANEVPLNGVFYNTRNGMLMGISQLLHIHKNRCDRNVTVLTKG
FCGRCDGNHRCPKGAIPLTHVADMAALKSNCKYRKKKTGKSRAVSGCSYQCLSVTEDHNC
CPGYFGLHCFKCPGKPGNWCSNNGICQDGVLGSGVCLCKEGFHGSACEDCEPGRHGTSCE
SECTCIHGKCLDGTGGDGKCVCYKGWKGENCTVEIVADPCNDTCDPNANCLTGLPGSLPT
CSCSAGYAGNGSFCSEMNPCDSANGGCSEHANCTKISPGERSCTCTEGYFGDGVVCIEKD
GCLVDNGGCHPLAECIKTGPNLVGCNCPPGYSGDGKFCFPINPCKTNNGGCSNFAWCIYT
EPGSRNCSCRFSYVGDGVTCRGRLHRELDREPAASWFNKKAQMHILKELNGEGLFTVFVP
HQDYISNDMTEEWKTKSLTGHMVRYHIVGCQMLLLSDIQSLRTLVTLSGSSLQITVEEDT
VYLNKEVKIISSDFVASNGVIHFIDKVLVPSDLQNKSDLHQPKKNVTETAESHGYTIFSK
LLQDAGLLSMVQNSLHHPFTMLWPTDKVFDSLPDERKKWLYSEDHRDKLAAYIKAHIIRD
NRIVAADLPNQKFLRTMYGSLISFACSKNITGDIFVDDGNAKIVDRMIEFDVGIAYGIDQ
LLEPPNMGARCDDFVNTTISGRCGSCSFTPPCPIGSIMVSIKPCSNPYYYSSGLFHSPFG
YRRRYHHLMNPFHHQLSIGCMKECISTQWAAKCCKNHYGRDCQVCPGGLEAPCSNHGVCN
DGMAEQGQCNCSLGFSGTTCGQCAPNRYGPDCRECNCTAHGKCAEGVDGDGSCFCKEGWI
GENCELQLGVKPVCTPGCDPNAVCQPNNICECDTLYEGDGRNCTVVDLCMDSNGGCHEHA
TCTQNGVNRTCTCLPAYTGDGYSCTAINRCVSDNGGCSEFATCIFTGPNERRCECNEGFV
GNGVQCLEKAIPPLDRCLEENGGCHPQAVCTDLHFEEKTAGVFHVQSLKGKYKLTYSDAQ
AACQAEGATMATIAQLSAAQQLGYHSCAAGWLDSEKVGYPTTNPSLNCGSNHVGVVLYNK
PGSLYDVYCYRIKDVSCICRDGYVGDGDFCNGNLLDVVASNANFSVFYSTLLQYANCSRG
VELMDFLSDETTYETLFVPVDTGFGENETLSLRDLEYHISVNDSFVFYDELSHGTVIPSR
LGYNLSVTVSSFKRWKLTNGSKLINDHLIVQWDIPASNGILHVIERPLKAPPPPVLSAVA
PASPHSSAAVASTVLMACLLAVALGGVLCYCFKRKNEGFHFRYFKADEDEDDGMPSPAEG
RSSLVSVPNPLFSGYSAFTEPFEETTDVDYSDTRSILG
NT seq
7677 nt
NT seq
+upstream
nt +downstream
nt
atggttttccttttggttatatgtttgatactctcagctgaggcacaagagaaaacggca
caggacagtcggtgtgatgcacacaatactctccagttcagcacagtgtgcacctcttgc
gcagccatttctagagcatggtgtcccccaggttccaggaggaccacccagatcactgga
gtcaaaggctgcagttaccttgtagacatgggagaagagaccctgaccctgtccggttgc
agtcatatgtgtgaaaaagatatcattgaacacaagtgctgccctgggttctggggacct
gactgcatgccttgtcccagcatgtcaggcaagccctgcaattggaaaggtacctgcatg
gatggagtgactgggaatggaacttgcatttgtgaggctgggtttagtggctttgcatgt
caggagtgtaaagatgaaaatgtatatgggccagactgccaattagagtgtgactgtgtt
aatggaatatgcagctctggcattggaggaaatggaagctgcatttgtgagacaggatac
actggagtaaggtgtgaccaagaatctcaactttgtcatggtatggcctgtggggagaat
tctgtttgcagtgaaggtgctggagggactactgcctgtggctgcatgcctggcttccag
aaaagcggacagcaatgcctgcctcaagatccttgtgcccagaatgtctgtgatcacaat
gctgactgtgtaaaccacggacaaaagaaatatgattgcagatgtaaagaaggctaccaa
ggagatgggaaagtgtgtgttccagtaaacccatgcttgactgacaatggaggctgtcct
acaaactcaacaaactgtgtatatgaaagtgtaggaaaggcaaagtgtgtgtgtaagagt
gggatggaaggagccaacccctcagctggctgtacaataaaagatgtgtgcaagaaagac
agctgcgataaaagtgcaaaatgtgtaactggactggatgggatggctagctgtgtttgc
cagaagggacagatttctgatggtacgttttgctatgggaacatcattgaaaggattttg
gagctgaacactgagtcgagacataaaggaaaacttaccagtgcgattaatatgttcgaa
aagggatgtgaacttgccttgagcaaaagactgtttacagtgtttgttccagcctcaaag
ttcacagtaactgggatgtcagaaaaatacttatgcaaactccacatgattattggcctg
catgtgttcagtgatttacaagacaaagtgttctggacactggggggggagccagttcat
ttcgtggcagacaagagctttagcttccaaagagatcaaaataaaacttatcgtatactg
cagagtgaccttgtcgcagccaatgggataattcacattatcaaccagccagtaaccaac
atcagtccagagcatgcagaagatgagcaggattcaaagaaaacaattgaagaaatcata
gcaaatcaacatatgttcaatagatatcgaacactgttagagaactctgaaatgtctcag
atattggaaggtcccggtcctttcacagtatttgtacctaccaacgaggcagtggatcag
cacagagatggcactatcatatatctacttacagatggaaagaaaaaacttcaagagctt
gtgaaacatcacatttatacatcagcctcggttactgtagacaggctggctgccatgccc
cagatcctctccatggcaaatcaaataatcactgttaatgttaccagtgatggcagaatt
gtattgggcgacaaagcagtggttttaaataagcaggacattgttgcatcgaatggaatc
attcacgtcattgatggaattttaattcctccttcaattgtcccaatcctgcccaacaga
tgtgatgtgaccgaatataacatcataatgggtcagtgtgtggattgcagttcattggac
accacgagctgtccttcaggaagcacagagctggacaagtttcataagggctgtgaatat
atctcctctgttatgaacacaatcactaacaggagaggttgtgccaaatactgcaacagg
actgttgtgagacatgattgctgtaagggcttttatggccccgactgtaaagcttgcctg
ggcggatttcaaaatccgtgttacgaacatggaacatgcaatgatgggattcaaggcaat
ggcacctgtagctgttttccagatttcaaaggcattgcctgtcacatttgttccaaccca
aacaaacatggtgaaatgtgtgatgaagattgccagtgcttgcatggtgtttgtgataac
aggcctggaagcaaaggggtgtgcaggatcaatacctgtgcagaaggttacacaggagag
ttgtgcgacagagtaacaaagccttgtggcccatctggtttgtctcagtattgccatgta
aacgctgtctgtgattacagtgatgatacaaggtgtgtttgccagaatgggtttgaagga
gatggcttttcgtgtctggaaattaacccctgtcaaaaggctgaccggggtggctgttct
gcaaatgcaaggtgcatctacataagcccaggcaatgccacctgcatttgtaatgaaggc
tggtcaggggatgggcaagcctgtgtggagattgacaactgtttacttgaaaacagagga
ggctgccacgacaacgcagactgtataagcaagggtcctggacagagcgagtgtgtgtgt
aagaagaactatatgggagacggttataactgtgacatagtaaatctctgtttgcaaagc
aacggaggctgtcattctttggctaagtgcaagcctcttggagatggtgaacgagagtgt
ctttgcccagaggactatggaggggatggagttatatgctacggaaacattttaacagaa
ctggcaagcaattccaacttcttcagtttttttcagtggattaagagctcctcattgtct
aacccagaaggcaatgtaactgtcctggtgccatctgaaagtgccataaaaggtttgaaa
gaagaacttcgacaattctggatgaggccttacatgctgccgtttctagtccgagtgcac
tttctggaaggcgcctttaccattgatgatctaaagcagcgtggagctgtggagctgtcc
acactgaacccacgcacgaagtgggaaataaagaacaccagtgggactgtgatgatagag
aatgccactgtcctcatttctgacattcctgcggtgaacggttttattaacatcattgac
aaggttttaataccctcgctggcagatattcccccaccacccccagatctaatgcaagtc
ctgaatcaaaccacctccttcagcttgttcaaggaggctttactgcattacaacctgaca
cagaaaattgactcatcacaaaagtacaccattcttattcctttcaataaagcaatagaa
gaccatttcaatgcaacaggttcagaagagctggatgaagacttggtaaggtatcatgtt
atagtggaagaaaagctgctgcctgggaatctgaggaacgggattcacaaaagcactatg
ttgggatcctcttatcaaataatgtttcacaataacaatgaaaaccagacctatgccaat
gaagtgccactgaatggggtattttataatactagaaatgggatgttgatgggcatttct
cagcttttacacattcataagaaccggtgtgacagaaacgtgacagttctaacaaagggg
ttctgtggacgttgtgatggaaaccacaggtgtcctaagggagcaatcccacttactcat
gtagcagatatggcagctctgaaatcgaactgcaaatacagaaaaaagaagacagggaaa
agtagagcagtgagcgggtgttcctaccagtgtttgagtgtgactgaggaccataattgt
tgtccgggctattttggactacattgctttaagtgcccaggaaagccagggaactggtgt
tccaacaacggcatctgtcaggatggtgttttgggctcaggggtttgcctgtgcaaagaa
gggttccacggtagcgcctgtgaagattgtgagcctggacgacatggaaccagctgtgaa
tcagaatgtacatgcatccatgggaaatgtctcgatggaacaggaggcgatgggaagtgt
gtctgctacaaagggtggaaaggagaaaactgcactgtggaaattgtcgctgatccatgc
aatgacacatgtgaccctaacgccaactgcttaacgggcctccctgggtcgctcccgact
tgctcttgctctgctggatacgctgggaacggaagcttctgctcagagatgaatccatgc
gatagtgctaatgggggatgctcagagcatgcaaactgcactaagatctcccctggggag
aggagctgcacatgtactgaaggctactttggtgatggggtggtgtgtatagagaaagac
ggctgtctagtagacaacggagggtgtcatcctctagctgaatgcatcaaaacagggcct
aatttagttggttgtaactgtcccccaggctacagtggggatggtaaattctgttttcca
atcaatccttgcaaaacgaacaatggaggctgcagtaattttgcctggtgtatatacact
gagccagggtcccgcaattgctcctgtaggtttagctatgttggagatggtgtgacatgc
agaggcaggttacatcgggaactagacagagaaccagcagcttcatggtttaacaaaaag
gcacagatgcacattttgaaggagttaaatggagaagggcttttcactgtctttgttccc
catcaggattacattagcaatgacatgacagaggagtggaagaccaagagtctgactggt
cacatggtgcgctatcacattgtcggctgccagatgctgctgctctctgatattcagtcc
ctcagaacactggtcaccctgtctggaagctctctgcagatcacggtggaagaggacacc
gtttacctaaacaaagaagtgaaaatcatcagcagtgactttgtggcctccaatggggtt
attcattttattgacaaggttttagtccccagtgatctgcagaacaaaagtgacttacat
caacctaagaaaaatgttactgaaacagcagagtctcacggatatactatattcagcaag
ctgctgcaggatgctggcttgctgtcgatggtacaaaatagtctccatcaccctttcaca
atgctgtggcctactgataaggtttttgattctcttcctgatgaaagaaagaaatggctc
tacagtgaagatcacagagataagctggcagcgtatatcaaagctcatatcataagggat
aacaggattgtggctgctgatctgccaaatcagaaattcctgagaacgatgtacgggtca
ctaatctcttttgcctgcagcaaaaacataactggtgacatttttgtggatgatgggaat
gctaaaatagttgaccggatgatagagtttgatgttgggattgcttatgggatagaccag
ctcctggaacctccgaacatgggggcccgctgcgacgattttgtaaacacaacgatttct
ggtaggtgcgggagctgcagctttacacctccatgtcctattggatcgattatggttagt
attaagccgtgttcaaatccttactattatagttctggcttgtttcactcaccttttggg
taccgtagaagataccatcatttgatgaatcccttccaccatcagctttcaattggttgt
atgaaggaatgcatttctacacagtgggctgcaaagtgttgtaaaaatcattatggaagg
gattgccaagtgtgtcctggtggtctggaggctccctgcagtaaccatggtgtttgtaat
gatgggatggctgaacaaggccaatgcaactgctcattggggttctctgggacaacatgt
ggacagtgcgctcccaaccgatatggaccagactgtagggaatgcaattgcactgcgcat
gggaagtgcgctgaaggggttgatggggatggaagctgcttctgcaaagagggctggata
ggagagaactgtgaactccagcttggcgtgaagcctgtttgtacacctggatgtgatccc
aatgctgtatgccaacctaacaacatatgcgagtgtgatacactgtatgagggggatggg
agaaactgtacagttgtggatttgtgcatggattccaatggaggatgtcatgagcacgca
acatgcactcagaacggtgtcaatcgcacctgtacgtgtttgcctgcctatacgggagat
ggctactcttgtacagcaataaaccgctgtgtatctgataatgggggatgtagtgaattt
gccacgtgtatcttcactggcccaaatgaacgaaggtgtgaatgcaatgagggctttgtg
ggtaatggagtgcagtgcctagaaaaagcaattcctccactagatcgctgtttagaggag
aacggaggctgccatccacaggctgtttgcacagaccttcactttgaagagaaaacggcc
ggagtgttccatgtgcagtcgctgaaagggaaatacaagctaacttacagcgatgcgcag
gcagcctgccaggctgaaggagctaccatggcaaccattgctcagctgtccgcagcacaa
cagcttggttaccattcctgtgcagcaggctggctggattctgaaaaggtcgggtatcca
accacaaacccctcactcaactgcggctccaatcatgttggagttgtactctataataag
ccagggagcctttatgatgtttactgctacagaattaaagatgtcagttgcatctgtcga
gacggatatgtaggggatggggatttctgcaatggaaacctgctggatgtcgtagcttcc
aatgctaacttctcagtgttttactctacattactacagtatgcaaactgttcaagggga
gtagaactcatggattttctctctgatgagaccacatacgagaccctgtttgtgcccgta
gacactggatttggagagaacgagactttatccttgagagaccttgagtaccacatctct
gtcaatgacagctttgtcttctacgacgaactgtctcatggtacagttataccatccaga
ctgggctacaacctctcggtgactgtatcctcatttaagagatggaagctaaccaatggt
tccaaactaataaacgaccatctgattgtacagtgggatatccctgcttccaatggaatt
ctccacgtcattgaaagacctttgaaggccccgcctcctccggtcctgtctgctgtggct
cctgcctctcctcacagctctgctgcagtcgcttccactgtcctcatggcgtgtttgctg
gctgtggctcttggcggggtgctgtgctactgcttcaaacgcaagaacgagggctttcac
ttccgttacttcaaggcggacgaagatgaagacgatggaatgccttcgccagcagaaggg
agatcttcattggtttcagtaccaaatccactgttcagtggttacagtgcatttacagaa
ccttttgaagaaaccacagacgttgattattcagacactcggagcattctcggttaa
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integrated database retrieval system
