Polyodon spathula (Mississippi paddlefish): 121328690
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Entry
121328690 CDS
T07273
Symbol
cxxc1b
Name
(RefSeq) CXXC-type zinc finger protein 1b isoform X1
KO
K14960
COMPASS component SPP1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121328690 (cxxc1b)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121328690 (cxxc1b)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
121328690 (cxxc1b)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
121328690 (cxxc1b)
COMPASS/SET1 complex (yeast)
121328690 (cxxc1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CpG_bind_C
zf-CXXC
PHD
PHD_5
Motif
Other DBs
NCBI-GeneID:
121328690
NCBI-ProteinID:
XP_041129583
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Position
16:20297854..20319832
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AA seq
579 aa
AA seq
DB search
MDSEVSDLDQATGLESGMEVENGEHAPVYCICRKPDINCFMIGCDNCNEWFHGYCINVTE
KMAKSIREWYCEECRGQNALLEIKYRPKKSREKETEQERSEKEERKQRETPEFKMDRRRG
SRIKRSARMCGECDPCKRTEDCAQCDFCKDMKKFGGPNKIRQKCRFRQCEVRARKMLRVR
DEEFLSGREQDDSMHSKDCNLSDEYDEQELELYQQYRAAGYDDHNMPWLSDEDDGPFLDP
VLRKRAVKVKHVKRREKKSEKKKEESKYRRHKQKQKHKEKTRHSERGESKETGALKQCLG
PGCVELARPNSKYCSEDCGMKLAANRIYEILPQRIQQWQQSPCVAEEQGKKLLERIRREQ
QQARLRLQDMERRFHELESVVVKAKQQHVQQDEEVNEGDNDDTDLQIFCVSCSHPINPKV
ALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPK
VPADEVCGCPLVRDVFEPTGEFCRVAKRKCNKHYCWEKLRRAEVDLERVRVWYKLDELFE
QERNVRTAMTNRAGLLALMLHQTIQHDPLTTDLRTSKER
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgaagtgtctgacttggaccaggcgacggggctggagagcgggatggaggtt
gagaatggagagcacgctccagtctactgcatctgccgtaaacctgacatcaactgcttc
atgattggctgtgataactgcaacgaatggtttcatggttactgcatcaacgtcacagag
aagatggccaagtctatcagggagtggtactgtgaggagtgtagaggtcagaatgccctg
ctggagattaagtaccgcccgaagaaatctcgtgagaaagagacggagcaggagaggagt
gagaaggaggagaggaagcagagggagacgccagagttcaagatggaccggagacgagga
tcccggattaagcgttctgctcgtatgtgtggggagtgtgacccttgcaaacgcacggag
gactgcgctcagtgtgacttctgcaaggacatgaagaaattcgggggacccaacaagatc
cgacagaagtgccggttcaggcagtgcgaggtccgggccagaaagatgctgcgagtccgt
gatgaggagttcctgtccgggagggagcaggacgactcgatgcactcaaaggactgcaac
ctgtctgacgagtacgatgagcaagagctggagctctaccagcagtacagggcagcagga
tacgacgaccacaacatgccctggctcagcgatgaagacgatggtccgttcctggaccct
gtgctgcgcaagcgagcggtgaaggtcaaacacgtcaagagacgcgagaagaagtcagag
aagaagaaggaggagagcaagtaccgtcgtcacaagcagaagcagaagcacaaggagaag
acacggcacagcgagcggggggagtcgaaggagacgggagcactgaagcagtgcctaggg
ccgggctgcgtggagctggcacgccccaactccaagtactgctcggaggactgcggcatg
aagctcgctgccaatcgtatctacgagatcctgccccagcggatccagcagtggcagcag
agcccgtgcgtggcggaggagcaggggaagaagctgctggagcgtatccgccgggagcag
cagcaggccaggctgcgtctgcaggacatggagcgccgcttccacgagctggagagcgtg
gtggtgaaggccaagcagcagcatgtgcagcaggacgaggaggtgaacgagggcgataac
gacgacacagacctgcagatcttctgcgtgtcctgcagtcaccccatcaaccccaaggtg
gcgctgcggcacatggagaggtgctacgccaagtacgagagccagacctcttttggatcc
atgtacccaaccaggattgagggggccacccgcctgttctgtgatgtctacaacccccag
agcaagacttactgcaagagactgcaggtgctgtgcccagagcactccagagatcccaag
gtccctgcggacgaggtgtgcggatgccccctggtgagagatgtcttcgagcccacggga
gagttctgccgggtggcgaagcgcaagtgtaacaaacactactgctgggagaaactgcgg
agagcggaggtggacctggagcgggtcagagtgtggtacaagctggacgagctgtttgag
caggagcgcaatgtgaggaccgccatgaccaaccgtgctggactgctggccttgatgctg
caccagaccatccagcacgacccgctgaccactgacctcagaaccagcaaggagcgctga
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