KEGG   Polyodon spathula (Mississippi paddlefish): 121328740
Entry
121328740         CDS       T07273                                 
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    121328740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pspa03019]
    121328740
   03036 Chromosome and associated proteins [BR:pspa03036]
    121328740
Messenger RNA biogenesis [BR:pspa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     121328740
Chromosome and associated proteins [BR:pspa03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     121328740
    COMPASS/SET1 complex (yeast)
     121328740
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I WDR90_beta-prop_4th Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SPT8 WD40_RFWD3 NBCH_WD40 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 MinC_C
Other DBs
NCBI-GeneID: 121328740
NCBI-ProteinID: XP_041129686
LinkDB
Position
16:38333785..38340783
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSEKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKVDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFITGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEIVTLYDLRSFD
KGPFATFKMLHDRTCEWTGLKFSNDGKLILVSTNGGTLRLLDAFKGVVLHSFVGYNNSKG
VTLEASFTPDSQFIMIGSEDGKVHVWSAESGMKVAVLDGKHTGPVTCLQFNPKFMTFASG
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctgacggataacgtgctgcggagtttccgcgtagccaaggtcttcagggagaac
tcggagaaaatcaactgttttgatttcagctcgaacggggagacggtgatttccagcagc
gacgatgactcgatcgtcctgtacgactgccaggaggggaagccaaagcgtactctgtac
agtaagaagtacggcgtggacctgatcagatacacgcatgcagccaacactgtggtctac
agctcaaacaaagtggacgacaccattcggtatctgtcacttcatgataacaagtatatt
cgctacttcccgggacacagtaagagagtggtggccttgtccatgtctcctgtggatgac
accttcataaccgggtccctggataaaaccatccgcctctgggacctgcgctccccaaac
tgtcagggcttgatgcacctgcaggggaaacctgtctgttcctttgaccctgagggactc
atcttcgcagctggtgtgaactctgagattgtgacgctgtatgacctgcggtcattcgac
aagggtccctttgctaccttcaagatgctgcacgacaggacgtgcgagtggaccgggctc
aagttcagtaacgacgggaagctgatcctggtctccaccaacgggggcaccctgcgactc
ctcgatgcattcaagggggttgtgctgcactccttcgtgggctacaataacagtaaaggt
gtgacgttggaggcttcattcactccggactcccagtttatcatgatcggctccgaggac
gggaaggtccacgtgtggagtgcggagagcggaatgaaggtggccgtgctggatgggaag
cacaccggccctgtcacctgtctgcagttcaaccccaaattcatgaccttcgccagcggc
tgctcaaacatggctttttggttgcccacaatagatgactga

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