Polyodon spathula (Mississippi paddlefish): 121328811
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Entry
121328811 CDS
T07273
Name
(RefSeq) calsyntenin-1-like isoform X1
KO
K22659
calsyntenin 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121328811
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Cadherin related
121328811
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GFIT
Motif
Pfam:
CLSTN_C
Cadherin
CDC45
Laminin_G_3
Laminin_G_2
SID-1_RNA_chan
V_ATPase_I
Toxin_R_bind_N
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
121328811
NCBI-ProteinID:
XP_041129821
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Position
16:13253240..13280335
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AA seq
970 aa
AA seq
DB search
MDVRRCKPNAYIAWLVLGLLYGVEADKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTVTKEGEICGFRIHGQNVPFEAVVLDKTTGEGVIRTKEKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKANVHIQVNDMNEYSPVFKEKSYKATVIEGKKYDNIL
KVEAVDADCSFQFSQICNYEIVTPDVPFTIDKDGYIRNTEKLNYSKERLYKLTVTAYDCG
KKRATDDVLVKINIKPTCKPGWQDWSKRMEYEPGTGSLSLFPSMHLETCEEPITSIQANI
ELETNHVGKGCDRDTYSEKSLHRLCGASSGTVELLPAPSSTANWTVGLPTDNGHDSDQVF
EFNGTQAIRIPEGIVPSNLKKPFTISVWMRHGPGAREKETILCNSDMTDMNRHHYSLYVH
SCRLVFLFRQDPAENENYKPAEFHWKLDQVCDKEWHHYVLNIEFPSVALFVDGNSYDPFL
VTEDYPLHPSKIETQLVVGACWQEHENETVTETFAGGILRMSQFFRGNLAGLMIRSGKLE
NKKVIDCLYTCKEGLDIQLPEEVGTGMKVQFNPSQSLLTVEGDDVESFDKAMQHISYLNS
RQFPTPGIRRLKITTTVKCFNEETCIAVPDAEGYIMVLQPEEPKISLSGIDHFARAASEF
ESNEGVILFPELRIVSTITREVEPEGEGEDDPTVQESVVSEEILHNLDTCEVAVLGDELN
AEQESLEVDLDRIQQKGMEVSSSSLGMIVTGVDTMDNYEQVLHLIRYRNWHTQSLFDRKF
KLVCSELNGRYISNEFKVEVNVIHTANPVDHPNNVMAQPEFVNPMHHGSVDLSGHNLVNA
HQSSVVPSAATIVIVVCVSFLSFMIILGVFRIRAAHQKTVRDHENGKENEMDWDDSALTI
TVNPMETYEDQHSSEEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQEDQQNVNRQQQ
LEWDDSTLTY
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgcgaaggtgtaagcctaatgcgtatatagcctggctggtccttgggttatta
tacggagttgaagcggataaagttaataagcacaaaccatggattgaaacgacatatcat
ggtatagtaacagaaaacgatgacaaggtgcttttggatccaccattgatagcattggat
aaggatgcaccgctacgctacgcagagagttttgaggtgactgtcaccaaggaaggtgaa
atttgtggatttaggatccatggtcagaatgtcccctttgaagctgtggtacttgacaaa
accactggcgagggggtcatacggaccaaagaaaaactggattgtgaactccagaaggaa
cacacgtttactatccaggcttatgactgtggagagggaccagatggggccaatatgaaa
aaatcccacaaagcaaatgtgcacatccaggtgaatgatatgaacgagtattctcccgtg
ttcaaagagaagtcctacaaagccactgtcattgaaggaaagaagtatgacaacatcctg
aaggtggaggctgttgatgctgactgctcattccaattcagccagatctgcaactacgaa
atcgtaactccggatgtgcctttcaccattgacaaagatggatacattaggaacacggag
aagctgaactacagcaaggaacgcttgtacaaactgaccgtcactgcgtacgactgcggc
aagaagagagctactgatgatgttcttgtcaaaataaacattaaaccgacctgtaaacct
ggctggcaagattggagtaaacggatggaatacgaacccggcacaggaagtttgtctctg
tttcccagcatgcacttggaaacctgcgaggagccaattacctctattcaagcaaacatt
gaacttgagactaaccatgttgggaaaggatgtgaccgagatacatactctgagaagtcg
ctccatcggctatgtggcgcttcctctggcacagtggagctgcttccggctcccagcagc
actgctaactggactgtggggctccccactgacaatgggcacgatagcgaccaggttttt
gagttcaatggcactcaggcgatcaggatcccagaggggattgtgccctccaacctgaag
aaaccgttcaccatctcggtgtggatgagacacgggcctggtgccagagagaaggagacc
attctgtgcaactctgacatgacagatatgaaccggcatcactattccctctacgtacac
agctgcaggctggtgttcctgttccgccaggatccagcggaaaacgagaactacaaacct
gctgagttccactggaaactggatcaggtgtgtgataaggagtggcatcactacgtgttg
aatatcgaattcccatccgtggcgctctttgttgatggcaactcctatgatcccttcctt
gtgactgaagattaccctcttcatccttccaagattgaaactcagctggtggttggagcg
tgctggcaagaacatgagaacgagactgtaaccgagacctttgcaggtggtattcttcgt
atgtcccaattttttagaggtaacttggctggtttgatgattcgttctggcaaactggag
aacaagaaagtaattgattgtttgtacacctgcaaggaggggctggacatacagcttcct
gaagaagtgggcacaggcatgaaggttcagtttaaccccagccagtctctgctgactgtg
gagggagatgacgttgagagctttgacaaggcaatgcagcacatctcctacttgaattca
cgacagttcccaacccctggaatcaggaggcttaaaatcaccaccactgtcaagtgtttc
aacgaggagacctgcattgctgtgcctgatgcagagggctacatcatggtgctacagccc
gaggaacccaagattagcctgagtggcattgatcactttgcacgggctgcctctgaattc
gagagcaatgaaggggtgattcttttcccagagctgcgcattgtcagcaccatcacacga
gaggtggagccggagggagaaggagaggacgaccccacagttcaagagtctgtggtatcg
gaggaaatcttgcacaatctggatacgtgtgaggttgccgtcctgggagatgagctgaac
gcagagcaggagagcttggaagttgatcttgaccggattcaacaaaagggaatggaagtg
agcagctccagcctcggcatgatcgtcacaggtgtggacaccatggataactatgagcaa
gttctgcacctgatccgctacagaaactggcacacacagtccctctttgacagaaaattt
aaactggtttgctcagagcttaatggccgctatatcagcaatgagtttaaggttgaggta
aatgttattcacaccgccaacccagttgatcacccgaacaatgtaatggcacagccagag
tttgttaatccaatgcaccatggttctgtggatctgtctggacataatctggttaatgca
caccagtcatcagttgtcccaagtgctgccaccattgtgattgtggtctgcgtcagcttc
ctttccttcatgattatcctgggagttttccgaatccgtgctgcgcaccaaaagaccgtg
agggaccatgagaatggaaaagagaacgagatggactgggacgactctgccttgaccatc
acagtcaaccccatggagacctatgaggaccaacacagcagtgaggaggaggaggaagag
gaagaggaggagagcgaggacggagaggaggaagacgacatcactagcgcagagtctgag
agcagcgaggaggaagagggggagcaagaggaccaacagaacgtcaaccgacagcagcag
ctggagtgggacgactctaccctcacctactga
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