Polyodon spathula (Mississippi paddlefish): 121328861
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Entry
121328861 CDS
T07273
Symbol
alms1
Name
(RefSeq) uncharacterized protein alms1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121328861 (alms1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pspa03037
]
121328861 (alms1)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
121328861 (alms1)
Cilium and associated proteins [BR:
pspa03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
121328861 (alms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
121328861
NCBI-ProteinID:
XP_041130343
LinkDB
All DBs
Position
1:106944312..106973516
Genome browser
AA seq
2826 aa
AA seq
DB search
MELHEVEESSDSSPIATTPTLPRYSRTEELMSQSSSPGSGTHVSSTSGFSLGEAIVQSAK
QGMETWYQLPAEDNVSQLTAASMSRLGAEHTGSELATLEEGMITVSEGMKKLRAGSRSNT
PQLEFQDSHLSPTLPLLAVYSTKGQSLSDDTFFQRTELDFAPLRESPDVSGLSERFTRPL
QISDAVQLAATEVSTDFSLSQHPLAIRTACADDASSVCSLSQHTISPASMDEADELKRDA
KEELFAPLEEDQHSKPPESQPGAEYQNSQARAGEYSSLVFLKENMFKASFDDDATFLDSS
VPAPLLMELLEKEVGLSSSGSSSHRTLSSSVPQIDQEVNLQPTVYTDNTEKSNSDANPAE
QLEDVVVPKLDLSRSSSGFSDKEIFKTPRDSAPTRTSVSSTTSTPRAIEKSDLNESRRSE
LSNITTRSWHGKSDEEISIALRKQLCSEILQKRQTLSGSSKLENISDPQQPTCHPVTPNT
GSLGTYSGKDSTIVEVQTGLGNGELTASSGCSFERGYKESDLSSSVSHTTFGGSFLRSLA
QPVSQSTPGVFPNVPRATVRPATGKLTPVESKHEVSLPSTDVQQSVSSKITLAPSINKDL
IEPAGQRSSTKGSEVLSAASLCNKRKVSSLPTLNYIEKVGAWNVTQTSGKTTFDNLALCG
FTGVSPKKKAFSAIADSLNQIFSRQNSGKSSPQLPTSQESFRSPRRNLAASFSGGSTPAT
EQSGSKEALERRSLSRSLSCTSVGTARKQIQQAGDPQTRKNEGLQNAQNLDAAVKAGADG
SSVESVLMQVKETSERRSAHVEDRNSVSDNRKTASPSETASPVEKDRFCSEDKVIGSDPK
ESDKLQGSQPSFKITIDRFSDVSPSDGACVSSREMSRIGEQTLSPSTGAVSAFSPSSLEV
DNYAPYWATNPTSPAKSTELNFEERIPVYLRNLGIDQSPSAILNPFAPRGPIREPEFSMK
GSICTPTKSVQQSEGGSPMKGDFSQSSIFSINSTLSMSIPMGSDIDSDTPVPAEFSVQEA
LRSSIERPVSQCSLQTAFHPLDRSLDVPPQQPSQATSDQKKSKDAEPLPASEPSSPHLND
SGNLISTRVKNLIDKFESSAGNATSDSLPSSPLADKDCQAGLRDAQAEEASWLATEASCR
GLDLRDDSFVGSKTLQEIRKLLGEAENVVSGRSSFSSLSASLKGSDDFSSFLHRKLDSFQ
DSFTSTVDNKESESSLLWRKSSSESMLTLDGLKDSSRKDSSLQPIATSHRDSSGSHLCDA
SGQICVSKDVEWVPLGELPWEAVQPSFTAKTRRRSEPEGCSEAIQKKVAPTSIALMRLPR
DISQEVDDGRDLAQELAGRFPTATPEDIETVPKMTPHVSDLKEGEKVTAIDDSSSVDSLA
ARVATLLKDESPATMASSIITEADEEERKARDWMKLKLAEEQPEPLELGKEDRLRIEEIK
TELLQNTKNKNTTTKAQWTTDSDSDATSSGDVHFGVPAAGVTRQFLALNAVKHQISSQMQ
KLTSNPFDTSVERCTPLRRDRDALLREIAQREGVSGVGAASRMAIESNKPIASITFSSRK
QPPSTSVSCSPHISPEVLHLRQLSEGGSNQSGNERDTELERRQARSLHTMPGTLSDCQGH
SSSPRVPTNANSHRVSLMQDRVPQHLAGQVPEFAPRSDICKHSNTLRGIALSQQDELDAV
QKAENRSGIDRFVQEPYSGYGFCHHQDPASQKELKLRLSEESAWNRQVDQEKDDFTPATE
IIPLPAPEHRLLRSPMKHGPEKSATKQMSRSTPNLSLIEKATVEPNNMESSAAPLQISSF
ASGTSSISSPTKKVLSYVHVTLSPRPVNGKSTSAENQFRFENSHHRLEDNGANFYPETRS
LFPCSSRMPTPQWSSDVQGAPYSSKAVSTIVYGGYSGVGVDHELRTALNSDQSVQFSGQR
SPLVLQNESTKQEGKKTSIPTQTVRTPSADAMTQITTHVPDKSLFASETTMDAGHSTRHH
ISTTPPEQLHRMSHISPNACDQASDQPVLLPYKPQGSHAMFYVPHPGSRISPVRSDTTIE
SSHPGSDDAIPPKFTAEVLGSRDKEIEIDITTRHKEGIYSKRALPTTVWEENEMTPGDSQ
KIPAVGRTQISEESQGQSHPGRHHQYIENPEHMQSPCDLSKSSTTQHSGSSSRGTHQSNE
DLRREVREFSIDQLDFSRDLEDGEFAALRGEPDDSMDDIHQHLSSVREDLTSTRTGRHWT
SKDRAPPLSSGRVTTASHRTTDPTSDRSLRSSRSLHKLWEKFKERQRQEPVDSKEYSLLE
RLDRLSRLLNNPVQHSILSVEENEQSRSEEERNKSRKREESKRGQRDKRGHCMRQAWVQK
FLEPEGTQTSIQTKDGISFRSSSTLEPIREISTERIKIILNRQKDPARKERDPSFSETVS
ETDTAVQTESGSSYQTDTGSTLSTIDTARLIRAFGPERVTLNPSLSKLYSTIDKQRDSLE
QKGQRRRAGRSHGKPAAPPAQYSTEESTMTCDSVSTASTYSLPAPRGPSSALTNKKAVKL
VSKSIQAGDLEIVNSATKKNTRDVGMTFPSPNLARAVHMQAPSNPDLQPNKMDKKTQDFL
YEKTTKRSNRQRHPRGVCWFVPADDLKSESKKENQPSSEPSPGSAWFAPLGYTKRWREPL
REKHMQEQLVNRILEQPIANQAISNKGPRSFVRITLQEALEMRRPDFVSRSRERMKRLEL
HAEERRIQSVFNSERENLFNNPTTKTGWRATNPDQQTDEEIPMVQRRRTVSKKEMFTRSK
HLPFKQGSLVSASEKVGRRMYSQLPEIRHRREEERRREEYKSYRLKAALYKKKITNHVLG
RKTPWQ
NT seq
8481 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcacgaagtagaggagagcagcgacagctcacccattgccacaacgcctaca
ttgccccgatacagtcgcacagaggagttgatgagccaaagcagcagccctggcagtggg
acccacgtatccagcaccagtggattctctttgggagaggccattgtgcagagcgccaaa
cagggtatggagacctggtaccagttgccagcggaggataatgttagccagctcaccgca
gcatcaatgagcaggctgggcgcagaacacacagggagcgagttagccactctcgaggaa
gggatgataacagtgagcgagggcatgaaaaagctacgagctggaagcagatcaaacact
ccccagctcgaatttcaggatagtcacctgtctcctactcttccattacttgctgtatac
tctactaaaggtcaaagtctgtctgatgataccttctttcaacgcacagaactggatttt
gctccccttagagaatctccagatgtttctggtctgtctgaaaggttcacaagaccactc
caaatcagcgacgctgtgcagcttgcagccacagaagtctctacagatttctctctgtcc
cagcacccgctggccattcgcacagcttgtgcagatgatgcaagcagcgtgtgctcttta
tcccagcacactatatcgcctgcctctatggatgaagcagatgagctcaaaagagatgct
aaagaagagctgtttgctcctctggaggaagaccaacattctaaacctccagagtctcaa
cctggagctgaatatcagaatagtcaagctcgtgctggggaatattcatcacttgttttt
ctcaaggagaacatgtttaaggcctcatttgacgatgatgctacctttttagatagtagt
gttcctgctccactcctaatggagctcctggaaaaagaggttggattgtccagcagtggt
agttcttctcataggactttgtcttccagtgtaccccagatagatcaagaagtgaatttg
caaccaactgtttatactgacaacactgaaaagagtaattctgatgcaaatccagcagaa
cagctggaagatgtggtggtaccaaaacttgatctctccagaagctcttcaggtttttca
gataaggagatatttaaaaccccacgagattcagcacctacaagaacttcagtctcatct
acaacatcaacacctagggctatagagaaaagtgatttaaatgagtcacgtaggtctgaa
ctgtccaatattaccacaaggtcttggcatggcaagtcagatgaagagatatccattgct
ctacgtaagcagctgtgttctgagatcttgcaaaaacggcagactctgtcaggttcctcc
aaactagagaatataagtgatcctcagcaaccaacctgccatccagtcacccccaacaca
ggctccttgggaacatacagtggaaaggacagcacaattgtagaagtgcagactggtctt
ggcaacggtgaattaactgcatcatcgggttgcagctttgagcgaggatataaagagagc
gatctgtcttcgtcagtcagtcacaccacttttggcggctcctttcttagatcgcttgca
caacctgtttctcagtcgactccaggggtgtttccaaacgtacccagggccactgtgcgt
ccagctaccggcaagctcactccagttgaatcaaagcatgaagtgtctttgccttccact
gatgtacagcaaagtgtctcctccaaaattactcttgccccatccatcaacaaagactta
attgaaccagctggtcagaggagtagcaccaaaggcagtgaagtgttaagtgctgcgtca
ctttgtaacaaaagaaaggttagttctctgcccactctgaattatatagagaaagtagga
gcatggaatgtaactcagacttcaggtaaaactactttcgacaacctggccttgtgtggt
ttcacaggcgtgtcccccaagaagaaggctttcagtgccattgctgattcattaaaccag
attttttcccggcagaacagtggcaagtcatcgccacagttgcccacatcacaagagagc
ttccgcagtcctagaaggaaccttgctgcttctttttctggaggttcgactccagctaca
gagcagtccggaagcaaagaagctctcgaaagaaggtctttgagcaggtctttgtcttgt
acttccgttggtactgcaagaaaacagattcaacaagctggggaccctcaaacaaggaag
aatgaaggtcttcagaatgcacaaaatctggatgctgctgtaaaagctggtgcagatgga
agctcagtagagtctgttttaatgcaggttaaggagacctctgaaaggagaagtgcacat
gtggaggataggaatagtgtgtcggataacagaaaaacagccagtcccagtgaaactgct
agcccagtggagaaggatcgcttctgctcagaagacaaagttattggctcagaccctaag
gaatcggataagttgcagggttcacagccatctttcaaaatcaccattgacagattcagc
gatgtctctccaagcgatggtgcctgtgttagttctcgggaaatgagccgcattggtgag
cagacactgtccccgtccacaggggctgtttcagccttctctcccagtagtttggaagta
gataactatgccccttactgggccacaaatccaacatctccagccaagagcacagaattg
aactttgaagaaagaattcctgtctaccttcgcaaccttgggatcgaccaatcgccgtct
gcaatacttaacccatttgcaccaagagggccaatcagagagccagaattttcgatgaaa
gggtctatttgcacgccaacaaaaagtgtacagcagtcagaaggaggtagtccaatgaag
ggagatttctctcaatcaagcatattctctattaactccacgcttagcatgtccatccct
atgggctccgatatagacagcgatactcctgtacctgctgagttctctgtgcaggaagct
ctcaggtcttctattgaaagaccagtcagccagtgcagccttcagacggctttccatcct
ttagaccgctcattagatgtcccaccccagcaaccttctcaggccacctctgatcagaaa
aagtccaaagacgctgagcctctaccagcctcggagcccagcagcccacatctgaatgac
agcgggaatctaatttcaacacgcgttaagaacctcatcgacaagtttgaatccagtgca
ggcaatgcaacttcagatagtttgccttcgagtcctttggctgacaaagactgtcaagcc
gggctcagagatgcacaagcagaagaagcctcatggttggccactgaagcaagttgtcga
ggcctggatctaagagacgactctttcgttgggtccaaaaccctgcaagagatccgaaag
cttttgggcgaggcagagaacgttgtgtccggcaggtcctccttttcatccctgtctgca
tccttaaagggatcagatgacttttcatcattcctgcataggaagttagacagctttcaa
gactcgtttacttctactgtggataacaaggagagcgagtcatcgctgctgtggaggaag
tcctcttcagagtccatgttgacattggatggactgaaagacagctctcggaaggatagc
tctctgcagcctatcgcaacttcccacagggattcctctggatcccacttgtgtgatgcc
agtggacaaatctgtgtaagcaaagatgttgagtgggtgcctcttggagagctcccctgg
gaagctgtgcaaccatccttcacagccaaaaccagaaggcgatctgagccagaaggctgc
agtgaagccatccagaaaaaagtggcccctaccagcattgctctcatgaggctccccaga
gatatcagccaggaggtggacgatggtcgtgatcttgcacaagagctcgcagggaggttc
ccaacagcaacacctgaggatattgaaactgttccgaaaatgactcctcatgtgtctgac
ctaaaggaaggtgaaaaggtaacagcaattgacgacagcagcagtgttgattctctggct
gcacgggttgccaccctccttaaagatgagtctccagcgacaatggcatccagcattata
actgaggcagatgaggaggaacgcaaagcacgtgactggatgaaactaaagctagcagag
gaacagcctgagcccttggaattgggtaaagaggaccggctgagaatcgaagaaattaaa
acggagctcttgcaaaacaccaagaacaaaaatacaaccacaaaggctcagtggactaca
gattcggattctgatgccacctccagtggtgatgttcacttcggggtgcctgctgcagga
gtcaccaggcagttcttagctctgaacgctgtgaaacaccagatctccagtcagatgcag
aaactgactagcaatccgtttgacaccagtgttgagcgttgcaccccactgcgcagagac
agagatgctctcctccgggagatagctcaaagagagggggtttcgggtgtgggtgctgct
agccggatggctatcgaatctaacaagcctattgcttccatcacgttttcctcccgtaaa
cagcccccctctacttccgtttcctgctccccccatatcagtccagaggtcttgcatctc
agacagctttctgaaggtggttctaatcaatctgggaatgaaagggacacagagctggag
agaagacaagcaagaagcctccacaccatgccaggaacactatctgattgccaaggacat
tcttctagtccaagggtccctacaaatgctaatagccacagagtatccctaatgcaggac
agagtcccccagcatttagctggtcaagttccagaatttgctccaagatctgatatatgc
aaacattctaatactttgagaggtattgccttgtctcaacaagacgaactagatgcagta
caaaaagctgaaaatagatcaggaattgatcggtttgtacaggaaccctattcaggttat
ggtttctgtcatcatcaagatcctgcatcacaaaaggagctgaagttgagacttagtgag
gaatcagcctggaatagacaagtagatcaggagaaggatgactttactcctgctacagaa
attattcccctccctgccccagaacataggctgctcagaagccccatgaagcatggtcct
gagaaaagtgccacaaaacaaatgtctagatcaaccccaaacctatccctgatagaaaag
gccactgtggagcctaacaatatggagtccagtgcagcaccattacagatttcatctttt
gcttctggtacttcctctatttcgtctcctaccaagaaggtactgtcatatgtccatgta
acactatcacccagacctgtgaatgggaagtccacttctgcagaaaatcagtttaggttt
gagaattcccatcataggcttgaggacaatggtgccaacttttatccagaaacccgaagc
ttgtttccctgttcttcaagaatgcctactcctcagtggtcttcagatgtgcaaggagcc
ccatactcatcaaaggctgtgtctacaatagtttatggtggttattcaggagtgggtgta
gaccatgaactaaggacagcattaaatagcgaccaaagtgttcagttttctggacaacga
agcccccttgttcttcaaaacgaatccacaaagcaggaaggtaaaaagaccagcatcccc
acacagactgtgaggaccccttctgccgatgccatgacccagataaccacacatgtgcct
gacaagtcattgtttgcatcagaaactaccatggatgcaggacacagtactagacatcac
atttccacaacaccaccagaacagttgcacaggatgtcccatatctcacccaacgcttgt
gatcaggcatcagaccagcctgtgctgctgccatataaaccccaaggaagccatgcgatg
ttctacgtcccacaccccgggtctagaatatcaccagtaagatcagacaccaccatagaa
agttcacatccaggctcagatgatgctattccaccaaaattcacagcagaggttctgggc
tccagagacaaggaaatagagattgatataacaacccggcacaaggaagggatctacagc
aagagagcgctgcccacaactgtatgggaagaaaacgaaatgacaccaggagattcacaa
aagatcccggcagtcggaagaacccagatcagtgaggagtcccaaggacagagccatccc
ggacgacatcaccagtacattgaaaacccagagcacatgcagagcccttgtgatctgagc
aaaagctccacaacacagcacagtggttcttcttccagaggcacacatcagtccaatgaa
gatttgaggagagaagtgcgagagttcagcatagaccagctggatttcagcagagacctg
gaagatggagaatttgctgctctgagaggagaacctgacgacagtatggatgacatacac
cagcatctgagctctgtgagggaggacctgacatcaaccaggactggaaggcattggacc
tcaaaagacagagcgccccccctgtccagtggcagggtgaccacagcaagccacagaacg
actgacccaacttctgaccgcagcctgcgttccagcaggagtttgcacaagctgtgggag
aagttcaaggaaagacagagacaagagcctgtagattccaaggagtattcccttttggag
cggcttgatcgactctccaggctcctcaacaaccccgtgcagcactccatcctgtctgtg
gaggagaatgagcagagcaggagtgaggaggagaggaacaagagtaggaaaagggaagaa
tcaaaacggggacagagagataaaagaggccactgcatgcggcaggcttgggtgcagaag
ttcctggaaccagaagggacacagacatccatccagaccaaagatggcatctctttccgc
tcatcttcgacgcttgagcccatcagggagatttccacagaacgtattaaaataatcttg
aaccgccagaaagaccctgcaaggaaagagcgggatcccagtttcagtgaaacggtctct
gaaacagacacagctgtccagacggagtcaggaagctcataccagactgacacaggcagc
accttatctaccatcgacactgcccggttaattcgagcctttggacccgagagagtgacc
ctcaatcccagcctttccaaactatacagcactattgataagcagagggacagtttagag
cagaagggacaaagaagaagagcgggcaggagccatggaaaacctgcagcccctccagct
cagtacagcacagaggagtcaactatgacctgtgactctgtgtcaactgcaagtacctac
tctctcccggcaccccgaggaccttcaagtgccctcaccaataagaaagctgtaaagctg
gtcagcaaatccatccaggcaggtgatttagaaatagtgaacagtgccaccaagaagaac
actagagatgtggggatgaccttcccctccccaaaccttgccagggctgtacacatgcag
gctcccagcaaccctgacctgcagcccaacaagatggataagaaaacacaggacttcctt
tatgagaagacgacaaagaggagcaacaggcaacgacacccccgaggtgtgtgttggttt
gttcctgctgatgatttgaagtccgagtcgaagaaagagaaccagcccagctctgagccc
agtccaggttctgcctggtttgcaccccttggctacaccaagcgctggagggagccactc
agagaaaagcacatgcaggaacagctggtcaacaggatcctggagcagccaattgcaaac
caagccatcagtaacaaaggccctcgttcatttgtgaggataactctgcaggaagccctg
gaaatgcggcgaccagactttgtctctcgttcccgggagcgaatgaaacggttagagctg
cacgcagaggagaggaggattcagtctgtgtttaacagcgaacgagaaaatctcttcaac
aatcccaccacaaagacaggctggagggccacgaatccggaccagcagactgacgaagaa
attcccatggtgcaaaggagaagaacagtttcaaagaaagagatgttcacaagatccaaa
cacctgccttttaagcaagggagcttagtgtcagcctcagagaaagtaggaagaagaatg
tattctcagcttccggagattagacaccggcgtgaggaggagaggaggagggaagagtac
aagtcctacaggctcaaggcagcgctctataagaagaaaattacaaaccacgttttggga
agaaaaactccttggcagtga
DBGET
integrated database retrieval system
