Polyodon spathula (Mississippi paddlefish): 121328966
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Entry
121328966 CDS
T07273
Name
(RefSeq) host cell factor 1-like
KO
K14966
host cell factor 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03083
Polycomb repressive complex
pspa04980
Cobalamin transport and metabolism
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121328966
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
121328966
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121328966
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121328966
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121328966
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121328966
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121328966
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
121328966
HMT complexes
COMPASS/SET1 complex
121328966
MLL-HCF complex
121328966
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
121328966
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
121328966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
121328966
NCBI-ProteinID:
XP_041130055
LinkDB
All DBs
Position
16:20533215..20560454
Genome browser
AA seq
2044 aa
AA seq
DB search
MAAPNRWRSAVSVGSGPHNAPALPGGAVAGSPLQPRWKRVLGWSGPVPRPRHGHRAVAIK
ELMVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDVPPGCAAYGFVCDGTRLLVFGGMVE
YGKYSNDLYELQASRWEWKKLKPKAPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDP
KNNIPRYLNDLYVLELRAGSSVVGWDVPITYGVLPPPRESHTAVVYTEKESKKSRLVIYG
GMSGCRLGDLWTLDIDTLTWNKPTLSGTAPLPRSLHSATTIGNKMHVFGGWVPLVMDDVK
VATHEKEWKCTNTLACLNLDSMTWEPIQMDTLEDNVPRARAGHCSVSINSRLYVWSGRDG
YRKAWNNQVCCKDLWYLETEKPPAPSRVQLVRANTNSLEVSWGAVPTADSYLLQLQKYDI
PAATAASSPVLNPAPSLPASHPKSPAPAASAPSAQSLPHSGVTLLPQAGSHAPSALPVLP
SVPGSPLGASTARGPAILKVAAPQSSGTSIVTVRHASQAGKSPVTVTSLPAGVRMVMPTQ
SGQSMGSSPQMSGMAALAAAAAATQKIPPSATPTMLNVPAGATIVKTMALTSGSSAVKVA
SPIMVSNPATRMLKTAAAQVGTSATSTGSTPTRPIITVHKSGTVTVAQQTQVVTTVVGGV
TKTITLVKSPITMPGGSALISNLGKVMSVVQTKPVQTSHTGQTTSNSLAQLIQAKGQLPA
GTILKLVTSADGKPTTIITTSQAGVTGNKPTILGISSMSPTAASKPGTTTIIKTIPMSAI
MTQPGVTGVTSSQGMKSPITIITTKMMTSGTGTPSKFITAMPKLSSGPGQQGLTQVVLKG
APGQPGTYLRTVPMGGVRLVTPVTMSSIKPNVTTLVVKGTTGVTTVGTVTGTVSTSLAGG
SVASANASLATPITTLGTIATLSSQVINPAAITVSTAQTSLTTAGSLSTASITMQQPMSQ
ATQVTLITTPSGVEAQPIQDLPISILASPTSEPSAAAVAIAGESGAGDQPGTVTLVCSNP
PCETHETGTTNTATTASSNMGVQKVCTNPPCETHETGTTNTATTASSNMGVQKVCTNPPC
ETHETGTTNTATTASSNMGVQKVCTNPPCETHETGTTNTATTASSNMGSGQTETSQNPHK
ASSNPPAETQETGTMNTATSASSSMGSDWTGTTNTSTTARSNMGSDWTGTVQSAQSGQEA
LRSGVSNPDCPQSQSTVALDTQTETACSDPPCETHQTGTTNTATTAASEAGIAGQTVYSN
PPCETHETGTTNTATTAASGMGSDQIGPVQRVCSNPPCETHETGTTNTATTTASGMGSDQ
TGPVQRVCSNPPCETHETGTTNTATTTASGMGSDQTGPVQRVCSNPPCETHETGTTNTAT
TTASGMGSDQTGPVQRVCSNPPCETHETGTTNTATTATSNMGDNGAQQADEASQDEAVTT
AAVEATPPPAPVTVSMVTPPPASTTMQTRAVTMVTQSTPMPGPAVPSISSITEGGSACPD
DSGLADSSQPSSSPDARGPQPEGLPEAELPGTSEPMQMEPSEPQPELMETTGEGEPVPEL
QEGMDASEPALQCQEGAGDAGSVSAGEGVDPLSLPQELMSEGQAVGGATLMVTGLTPEEL
AVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVLRQDGQHAPVSTTIPIVLTQQELAAL
VQQQHQLQEAQAQAQAAAAAAAAAAQQSQSQAALPTEGLAPADSLNDPASESNGHSELAS
AVTRAVAGLLPAGATPPSESLAPSSSFAPPVPVAVPVASPVKMQAAAALADVANGIESAA
GVKCSAPRPPQPPVKKENQWFDVGVIKTTNMVVTHFYLPSDDTPAGDDDTAPIPDYNQLK
KLELQPGTAYKFRVAGVNACGRGSFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEP
PSVTSGKIIEYSVYLAIQSSQAGEPKASSPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDY
TTKPAIIFRIAARNEKGYGPATQVRWLQESSKDGSAAKPAVKRPVSSSPEVKPSGPKKAK
SDGQ
NT seq
6135 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcccaatagatggagatctgctgtttcggtgggttccggaccccacaacgcc
ccggccctgcccggcggcgctgttgccggctcgcctctgcagccccggtggaagcgggtc
ctgggctggtccggtccggttccgcggccacgccacggccaccgcgccgtggcgatcaag
gagctgatggtggtgttcggagggggaaatgaggggatcgtggacgagctgcacgtctac
aacacagccacaaaccagtggttcattccggcagtgcgtggagatgtgcctccgggatgc
gctgcctatggattcgtgtgcgacgggacgaggctgctggtgttcggaggcatggtggag
tatgggaaatacagcaacgacctgtacgagctgcaggccagcaggtgggaatggaagaag
ctgaaacccaaagcccccaaaaatggcccccctccctgcccccgcctggggcacagcttc
tccctcgtgggtaacaagtgctacctcttcgggggtctggccaacgacagcgaggacccc
aaaaacaacattcccaggtatctgaatgacctgtacgtgttggagctgcgcgcgggctcc
agcgtggtcggctgggacgtgcctatcacgtacggggtcctgccccccccgcgggagagc
cacaccgccgtggtctacacggagaaggagagtaagaagtcccgactcgttatctacggg
ggcatgagcggttgccggctcggggacctgtggaccctcgacatcgacactctgacatgg
aacaagcccaccctgagtggcacggctcctctgccacgcagcttgcactccgctaccacc
atcggaaacaagatgcacgtgtttggtggctgggttcctcttgtcatggatgatgtgaag
gtagcgactcacgagaaggagtggaaatgcaccaacaccctggcctgtctcaatctggac
tcgatgacatgggagcccattcagatggataccctggaggataatgtcccgcgcgcgcgg
gcaggacactgctccgtgtccatcaactcgcgcctctacgtgtggagcggccgggatggc
taccgcaaggcctggaacaaccaggtgtgctgcaaggacctgtggtacctggagacagag
aagccgcctgccccgtcccgagtgcagctggtccgagccaacaccaactccctggaggtg
agctggggggcggtgcccacggcggacagctacctgctgcagctacagaaatacgacatc
cctgcagccactgcagccagctctcctgtgctgaaccctgcgccctcgctgcccgccagc
caccccaagagccccgcccccgcggcctccgccccctccgcccagagcctgccccactcc
ggggtcaccctgctgccccaggctggctcccacgccccctccgcactgccggtgctgccc
tccgtgccagggagcccgctgggggcttccactgcccggggaccagccatcctcaaggtg
gcagcacctcagtccagcggcacctccatcgtcacggtgaggcatgcgagccaggccggc
aagtctcctgtcaccgtgacctcacttcctgccggcgtgcggatggtcatgcccacacag
agtggccagtcaatgggaagcagcccccagatgagcgggatggccgcattggctgctgca
gccgctgccacccagaagatcccgccctcggccacgcccaccatgctgaacgttccggcc
ggagccacgatcgtcaagacgatggccctgacatccggctcgtctgcggtcaaggtggca
tccccaatcatggtcagtaaccccgccacgcgcatgctgaagacggcagccgctcaggtg
ggcacctccgccacgtccacgggcagcactcccacgcgacccatcatcaccgtgcacaaa
tccggcaccgttaccgtggcacagcaaacacaggtcgtcaccaccgtggtgggaggagtc
accaaaaccatcacgctggtgaagagccccatcaccatgcctgggggcagcgcgctgatc
tccaatttgggtaaagtgatgtctgtggtgcaaacgaaaccagtccagacctcgcacacg
ggacagacgacgtcaaactcccttgctcagctcatacaggctaaagggcagcttccagct
ggcaccattctaaagctggtcacctctgctgacggcaaaccgaccaccatcatcaccacg
tcacaggctggcgtcacgggcaacaagcctaccatcctgggcatcagcagcatgtccccg
accgcggccagcaaacctggcaccaccaccatcatcaagaccatccccatgtctgccatc
atgacccagcccggggtcactggtgtgaccagtagccagggcatgaagtctcccatcacc
atcatcaccaccaagatgatgacgtccggtaccggcaccccctccaaattcatcaccgcc
atgcccaaactgagcagcgggcccggccagcaggggctcacacaggtggttttgaagggc
gccccaggccagcctggcacgtacctgcgcaccgtcccgatgggaggggtgaggctggtc
accccggtcaccatgtcatctatcaagccaaacgtcaccactctggtggttaagggaacc
acgggagtgaccaccgtcggtacagtcactggcacagtgtccaccagcctggcggggggc
agcgtggccagcgccaacgcctccctggccacgcccatcaccacgctgggcaccatcgcc
acgctgtccagccaggtcatcaacccggcggccatcactgtgtccacggcgcagaccagc
ctgacgacggccggcagcctgtccacagccagcatcaccatgcagcagcccatgagccag
gccacccaggtgactctcatcacgacccccagcggtgtggaggcgcagcccatccaggac
ctccccatctccatcctggcctctcccacctccgagccatccgctgcggcagtggccatc
gccggtgagtctggggccggggaccagcccggcacagtcaccctggtgtgctccaaccct
ccctgcgagacccacgagactggaaccaccaacacagccactactgcctcctcgaacatg
ggggttcagaaagtgtgcacaaacccgccctgcgagacccacgagaccggaaccaccaac
acagccaccactgcctcctcgaacatgggggttcagaaagtgtgcacaaacccgccctgc
gagacccacgagaccggaaccaccaacacagccaccactgcctcctcgaacatgggggtt
cagaaagtgtgcacaaacccgccctgcgagacccacgagaccggaaccaccaacacagcc
accactgcctcctcgaacatgggctcgggccagacagaaacgtcacagaatccgcataag
gctagctccaacccaccagcagagacccaggagacgggaaccatgaacacggccacctcg
gcctcttccagcatggggtccgactggaccggcaccaccaacacctcgaccacggcccgc
tctaacatgggctctgactggaccggcaccgtgcagagcgctcagtccggtcaggaggcg
ctccggagcggggtgagcaaccccgactgcccccagtcccagagcaccgtggctttggac
acccagacagagaccgcgtgctccgacccgccctgcgagacccaccagaccggaaccacc
aacacagccaccacggctgcgtctgaagcaggcatcgcggggcagactgtgtactcgaac
ccgccctgcgagacccacgagactggaaccaccaacacagccaccacggcagcttccgga
atgggttcagaccagattggaccagtgcagagagtgtgctccaacccgccctgcgagacc
cacgaaactggaaccaccaacacagccaccacgacagcttccggaatgggttcagaccag
actggaccagtgcagagagtgtgctccaacccgccctgcgagacccacgaaaccggaacc
accaacacagccaccacgacagcttccggaatgggttcagaccagactggaccagtgcag
agagtgtgctccaacccgccctgcgagacccacgaaaccggaaccaccaacacagccacc
acgacagcttccggaatgggttcagaccagactggaccagtgcagagagtgtgctccaac
ccgccctgcgagacccacgagaccggaaccaccaacacagccaccacggccacgtccaac
atgggggacaacggagcccagcaggcagatgaagcttcccaggatgaggcggtaaccacg
gcagcagtagaagccacgccccctcctgcccctgtcactgtatccatggtgacgccccct
cctgccagcaccaccatgcagacccgcgcagtcaccatggttacacagtccacacccatg
ccggggcccgctgtaccgtctatctcctccatcactgaaggaggttcggcctgtcctgac
gactcgggtctggcagactccagccagccctcctccagccccgacgctcgggggcctcag
ccggagggcctgcccgaggcagagctcccggggacctcggagcccatgcagatggagccc
tcggagccccagcctgagctcatggagaccacgggagaaggagagccagtgccggagctg
caagaggggatggatgccagcgagcccgctctgcagtgtcaggaaggcgcgggggacgca
ggatccgtgtccgcgggcgagggggtggatcctctgtctctcccccaggagctgatgtca
gagggccaggccgtgggaggggccacgctgatggtgacggggctcacccctgaggagctg
gccgtcacggccgccgcggaggcagcagcgcaggcagccgccacagaagaggcccaggct
ctggcgatccaggcagtgctgcaggccgcacagcaggcagtgttgaggcaagacggtcag
cacgcccccgtctccaccaccattcccatcgtcctgacccaacaggagctggccgctctg
gtgcagcagcagcaccagctgcaggaggcacaggcgcaggcacaggcagctgccgccgca
gccgcagcagctgcgcagcagagccagtcccaggcagccctgcccaccgagggcctggca
ccggcagacagcctgaacgacccggccagcgagagcaacggccacagcgagctcgccagc
gccgtcaccagggctgtggcgggactgctgccagcgggggcaacaccgcctagcgagagt
ctggccccctccagctcctttgctcctcctgtgcccgtggctgtgcccgtggccagccca
gtgaagatgcaggcagccgctgccctcgcggacgtggccaatgggatagagtctgcagcc
ggggtaaagtgctccgccccccgccccccccagccccctgtgaagaaggagaaccagtgg
tttgacgtgggggtcatcaagaccaccaacatggtggtgactcacttctacctgccatcg
gacgacacgcccgccggagacgatgacactgctcccatcccggattacaaccagctgaag
aagctggagctgcagcccggcacggcatacaagttccgcgtggcaggagtgaacgcctgc
ggccgcggctccttcagcgagatctccgccttcaagacctgcctgccgggattcccaggg
gccccctgcgccatcaagatcagcaagagcccggacggagctcacctgacctgggagccc
ccctcagtcacctctgggaagatcatagagtactctgtgtacctggcgatccagagcagc
caggctggggagcccaaggcctcgtccccggcccagctggccttcatgcgtgtgtactgc
gggcccagcccctcctgcctggtgcagtcctccagcctgtccaacgcacacatcgactac
accaccaagccggccatcatcttccgcatcgccgcccgcaacgagaagggctacgggccg
gccacgcaggttcggtggctgcaagagtccagtaaagacggctcagctgccaaaccagca
gtgaaaagaccggtctcctcgtcccctgaagtgaaaccctccggtccaaagaaggcaaaa
tctgatggccagtaa
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integrated database retrieval system
