Polyodon spathula (Mississippi paddlefish): 121328995
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Entry
121328995 CDS
T07273
Name
(RefSeq) laminin subunit beta-1-like
KO
K06243
laminin, beta 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121328995
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121328995
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
Laminin_I
F5_F8_type_C
Med21
SoxA-TsdA_cyt-c
Motif
Other DBs
NCBI-GeneID:
121328995
NCBI-ProteinID:
XP_041130092
LinkDB
All DBs
Position
16:complement(26545173..26625096)
Genome browser
AA seq
1846 aa
AA seq
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MGTCYSPQRLRMTLLAGIVMQALSALAQDQPSVPHGCTEGSCYPATGNLLIGRAKGLRAT
STCGLQGPEEYCIVSHLQESKNCFQCDSREPYNYWNRNSHRVENVIYLKDQDRESTWWQS
ANGEEKVSIQLDLEAEFHFTHLIMKFKTFRPAAMMIERSADFGHSWKPYRYFSYDCSKMF
PRVPVRALHLIDDVVCEERYSDIEPSTEGEVIYKVLDPAIDVKDPYSLEIQELLRITNLR
IHFTKLHTLGDNLLDRRREVLQKYYYAIYELVVRGSCFCYGHASECAPIPGISGGVEGMI
HGRCVCKHNTEGLNCEKCRPFYNSLPWRPAEAGNPHSCRECMCNGHSKRCHFDMAVYLAT
GNTSGGVCDNCLHNTMGRSCEMCKPFYFQDPSRDIRDPSVCVACDCDPVGSLEGGVCDSH
TDLDLGMIGGQCRCKENVKGTRCDYCKEGFYGLSRNDPLGCQPCNCDPRGIIMGGSPCDQ
VSGDCSCKRYVTGRYCNQCLVEYWGLSTDIAGCRACGCDFGGAYNNRCMMESGQCSCRPH
IMGRQCGDVQPGYFCAGLDYYTYEAEDAVPHSPDDPLLPGKPKPKAEIDCLEYVNTEVKR
VRRHRRIPRVQQQRAALRKIRQIQQTPDVKVVHRERVPGQMVTWTGPGFARVRDGAGLVF
TIDNIPFSMDYDVMIRYEPESTEDWEAIVSISSQLLPRSQRCGNVLPSEQMYTVTLPHQQ
RYIKMPRPFCFEPNNRYVVAIRFQRFRVTERHLTAFILIDSLVLFPRYTELPGFHGNDPD
SVHHREEMERYMCLDSFLMVPMPMLAEMCAKLLCSISAILHDGAVPCECDLQGSLSAVCE
KIGGQCQCKPNVIGRRCNQCAPGTYGFGPYGCHHCDCHPQGAVSSLCDPVSGQCRCQHGA
TGRQCSNCQPGHWGFPSCRPCQCNGHSETCDPQTGACTSCRDYTSGHHCGRCLDGFYGNP
LLGSGEHCRPCPCPGNPGSGHSNGDSCSTAPSSNQIICHCRQGYTGPRCDRCSPGYFGSP
ERPGGGCRPCQCNNNIDSRDPKSCDPRSGQCLKCLYNTDGPTCAACKPGYYGNAAAQDCR
RCTCNIAGTLQSQCSGDVCNCDRTTGACPCRANVIGQNCDQCGPEHWNFGRDGGCEPCNC
YLQHSLGTDCNMFTGQCLCKPGFGGRICSDCQENYWGDPNTECTACNCDPSGSLTLQCDR
KTGHCICMEGVTGGRCDQCTRGFTGSFPRCAPCHPCFEEWDKLVCTLRRELDKVQERVKQ
IQESGVTSDDNVERIQKLEEKLAQIQSLINGQSREMLYHSVHQTADRLRKEVLHTDRRLQ
VLSGELNSTSHSEKQQRERLGQLETELRELNDTVTKRRRELENLISAGTSEKFENVRKYY
QESLDAERRANVSVSGPDSPVEQSQETRNMTESLMNKKKEEFFRTMTAQKKSLKELQAKT
KDLDKSINNLSAKVCGSKKNGKGCIEDPCGGANCRDDFGNRKCGGGSCNGTLSASIRALN
LVQNKTREIEAAAQDLDNIQKKLQDVAKLTQDIKAQAERTLTKAQRTKDEIVSSNQKLRE
FIQKIRDFLTVDGADPKDIELVARQVLSISLPMSASNLTKTIQEIKVCIVNLSDINAVLN
TTAQQLSIAHKLLEKAKDAKVQADGVENLVNITKESLDRARSAADTTEKELKKAKKNLKN
VLDRTAGITSKLQGIEDKQMDAMMRLANLSKQAESVHDKTEQNRAIAEEAKALSEKATET
ATGLDKDLEEVELKYKELEGKVGGLGNGANSIDSVTERAIDIKKEAEELLKKANKDMKWL
DELEKRFGRNEKRMEAQATELIDLEKNITSIRNIIRSNVTQYSTCS
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggggacctgctatagtcctcagaggctcaggatgaccctgctggctggcatcgttatg
caggctctgagtgctctggcccaggaccagccctctgtgccgcatggctgtacagagggc
agctgttacccggcaacagggaacctcctgattggtcgagcgaagggcctgcgtgccaca
tcgacctgcggtctgcagggcccagaggaatactgcatcgtcagtcacctccaagaatcc
aaaaactgtttccagtgtgactcccgtgagccctacaactactggaacaggaacagccac
cgagtggagaacgtgatctacctgaaagaccaggatcgggagagtacctggtggcaatca
gctaatggggaggagaaagtcagcattcagctggacctggaggcagagtttcatttcact
cacctcatcatgaagtttaagaccttccgccccgctgctatgatgattgagaggtcagct
gatttcggacactcctggaagccgtaccgctacttctcctacgactgcagcaagatgttc
cccagagtgccggtgcgggcgctgcacctcatcgatgacgtggtgtgcgaggagcgctac
tctgacatcgagccctccacggagggggaggttatatacaaagtgctggaccctgccatt
gacgtgaaagacccgtatagtttggagattcaagagctgcttcggatcaccaacctgcgg
atacactttaccaaactgcacacgctgggggacaacctcctggaccgcaggagggaggtg
ctgcagaagtattactacgccatctatgagctggtggtgcgaggcagctgcttctgctat
gggcatgcctctgagtgcgcacccatcccagggatcagcggaggagtggaaggaatgatc
catggcaggtgtgtctgcaaacacaacacggaggggttaaactgtgagaagtgcaggccc
ttctataacagccttccctggagacctgcagaggcaggcaacccacactcctgcagagaa
tgcatgtgcaatggccattcaaaacgatgtcacttcgacatggcggtgtacctggcaacc
gggaacacgagcgggggtgtctgtgacaactgcctgcacaacaccatgggccgcagctgt
gagatgtgcaaacctttctacttccaagaccccagccgcgatatcagagacccgtccgtc
tgtgtggcctgtgactgtgacccagtgggctccctggaggggggtgtgtgtgacagccac
acagacctggacctgggcatgatcggcgggcagtgccgctgcaaagagaacgtcaagggc
acccgctgtgactactgcaaggagggcttctacggactgagtaggaatgaccctctgggc
tgtcagccctgcaattgtgaccctcgtgggattataatggggggctccccctgtgatcag
gtcagcggggactgttcttgtaagagatatgtcacggggcgctactgtaaccagtgcctg
gttgaatactggggtcttagcactgatattgcaggctgccgggcctgtggctgtgacttt
ggtggagcctacaacaacaggtgtatgatggaaagcgggcagtgtagctgtcgaccgcac
atcatgggcaggcagtgtggcgatgtgcagcctggctacttctgtgcaggtctggattac
tatacctatgaggcagaggacgcagtgccacattcccctgatgaccccctgttgcctgga
aagcccaaacccaaggctgagatcgactgtctggaatacgtgaacaccgaggtcaaaagg
gtgcgccgccaccggaggattcccagggttcagcagcagagggcagcactgaggaagatc
cgccagattcaacaaacacctgatgtgaaagttgtgcacagggagagagttcctgggcag
atggtgacctggacaggcccaggcttcgccagggtgagagatggagcaggcctggttttc
accatcgacaacatcccgttctccatggactacgacgtcatgattcgatacgagccagag
tccactgaagattgggaagccattgttagcatttcatctcagctattacccaggagccaa
cgctgtggcaacgttcttccttcagagcagatgtacacagtgacactccctcatcaacag
aggtacataaagatgcccagacccttctgctttgagccaaacaaccgttacgtggtggct
atccgcttccagcgcttcagagtcacggagagacacctgacagccttcatactgatagat
tcattggttctgttcccgaggtacacagaactgcctggtttccatggaaacgacccggac
tcggtacaccaccgagaggagatggagagatatatgtgtctggactcgtttctgatggtg
cccatgcccatgctggcagagatgtgtgccaaactgctctgcagtatctcagctatcctg
catgatggggcagtgccctgcgagtgtgacctccagggctctctcagtgcagtctgtgag
aagattggtgggcagtgccagtgcaaacccaacgtgatcggacgccgctgcaaccagtgt
gcaccagggacatatggcttcggaccctatggctgccaccactgtgactgccaccctcag
ggagcggtcagtagcctgtgtgaccctgtctcgggtcagtgccggtgtcagcatggtgcg
actggacgccagtgcagtaattgccagcctgggcattggggattcccgagctgccggccc
tgccagtgtaacgggcactctgagacgtgtgacccccagaccggagcctgcaccagctgc
agggactacaccagcgggcatcactgtggcaggtgcttggatggtttctatggaaaccct
cttctgggatctggagagcactgccgcccgtgtccatgccccggcaacccaggaagtggt
cattccaacggggactcgtgttccactgcaccatcgtccaatcagatcatctgtcactgc
agacagggatacacaggccctcgctgtgacagatgctcccctggttatttcgggagcccc
gagagacctgggggagggtgccgtccctgccagtgcaacaacaacattgacagcagagac
cccaagtcatgtgatccacgcagcggccaatgcctgaagtgcctgtacaacaccgacggg
ccgacctgtgcggcgtgcaagcctggttactatggcaacgcagctgcgcaggactgcagg
cgctgcacctgtaacatcgccggcacgctgcagtcacagtgctccggagatgtgtgtaac
tgtgacagaaccacaggggcctgcccatgccgggcgaatgtcatcgggcagaactgcgac
caatgtggcccggagcactggaacttcgggagggacggaggctgtgagccctgcaactgc
tacctccagcactccctcgggactgactgcaacatgtttaccggacagtgtctctgcaag
cctggctttggagggagaatctgctctgattgccaggaaaactactggggagaccccaac
acagagtgcacagcatgtaactgtgacccctctggctcgctgacgctccaatgcgatcgg
aagacggggcactgcatctgtatggagggggtgacggggggccgctgtgatcagtgtacc
cgtggcttcaccggcagcttccctaggtgtgcgccctgccacccctgcttcgaggagtgg
gacaagctggtatgcacgctgcggcgggagctcgataaggtccaggagagggtgaagcaa
atccaggagtctggggtgacctcggacgataatgtggagcgcatccagaaactggaggag
aagctggctcagattcagagcctcatcaacgggcagtccagagagatgctctaccacagc
gtccaccagactgctgatcggctaaggaaggaggtgttgcacacagacaggaggctgcag
gtgctgtctggggagctgaacagcacctcgcacagtgagaagcagcagagagagcgcctg
ggccagctggagactgagctgagagagctgaacgacactgtgaccaagcggcggagagag
ctggagaacctcatctctgcagggaccagcgagaaattcgagaatgtccgcaagtactac
caggagtccctggatgcagagcggagagccaacgtctcagtgtcgggtccggacagcccc
gtggaacaatcacaggaaacgaggaacatgactgagagcctgatgaacaagaagaaggag
gagttcttccggaccatgacagcgcagaagaaatcgctgaaagagttgcaggctaaaacc
aaggatctggataaaagcatcaacaatctgagtgcaaaggtttgtggtagtaagaaaaat
ggaaagggctgcattgaagatccctgtgggggggcgaactgccgcgatgactttgggaac
cggaaatgcggtggagggagctgtaatggcactctgagtgcctccataagagctctgaat
ctcgtgcagaacaagacgagagagattgaagctgctgctcaggacctcgacaacatccag
aagaagcttcaggatgttgcaaaactgacccaggacatcaaagcccaggcagagaggacc
ctcaccaaagcacagaggaccaaggatgaaatcgtgagctccaaccagaaactcagagaa
ttcatccagaagattagagacttcttgactgtggatggagcagaccccaaggatatcgag
ctggtggcccggcaggttctgtccatctcactccccatgagtgccagcaacctcaccaag
accatccaggagatcaaggtgtgcattgtgaacctcagcgacatcaacgcggtccttaac
accacggcccagcagctcagcatcgctcacaagcttctggagaaggccaaggatgccaag
gtccaagcagatggagtggagaacctggtgaacatcaccaaagagtctctggacagggcc
cgctccgccgctgacacaacagagaaagaactgaaaaaagcaaagaagaacctcaagaac
gtgctggaccgcactgccgggatcacaagcaagctccaaggcattgaagataaacagatg
gatgccatgatgcgattggctaacctgtccaagcaggcggagtctgtgcacgacaagacg
gagcagaaccgagcgatcgctgaagaagccaaggccctatcggagaaggcaactgagaca
gcaacggggctggacaaggatctagaggaggtggagctgaagtacaaagagctggaagga
aaggtgggcggactgggcaatggagccaacagtatagatagtgtgaccgagagagcgatc
gacatcaagaaggaagctgaagaactgctcaagaaagccaacaaggacatgaagtggtta
gatgaactggagaagaggtttgggaggaacgagaagagaatggaagctcaagccacagag
ctgatagatctggagaagaacattaccagcatcaggaacattattcgaagcaacgtgacg
cagtacagcacctgctcgtag
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integrated database retrieval system
