Polyodon spathula (Mississippi paddlefish): 121329048
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Entry
121329048 CDS
T07273
Name
(RefSeq) protein polybromo-1-like isoform X1
KO
K11757
protein polybromo-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121329048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121329048
03036 Chromosome and associated proteins [BR:
pspa03036
]
121329048
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121329048
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
121329048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
CHDNT
Motif
Other DBs
NCBI-GeneID:
121329048
NCBI-ProteinID:
XP_041130254
LinkDB
All DBs
Position
16:33821741..33836721
Genome browser
AA seq
1678 aa
AA seq
DB search
MHRSKGVASMGSKRRRATSPSSSVSGGDFDEGQTSTSTPVSGRKRRRASNIPTVDPVSGF
HSIVPPLQRDNEHSGRKKIAVCHELYNTIRDYKDDHGRLLCELFIRAPKRRNQPDYYEIV
TQPIDLMKIQQKLKTEEYDDVDQLTADFQLLFNNAKSYYKSDSPEYKAACRLWDLYLRTK
NEFVQRGDYEEDNEDGEDTQENPGTSTEEEAPPSCLKEILEQLLEAVVTSAEPSGRLISE
LFQKLPSKVHYPDYYAIIKEPIDLKTIAQRIQGGFYKSVTAMAKDIDLLVKNAKTYNEPG
SQVFKDANTIKKIFIQKKTEIEHAEPTKSSLRIRNRRSAQGDRLSAITMALQYGSESDED
ALLAGAVRYDEGESEVESMSSCMEMSNPIFQLYEAVRGGRNSQGQLVAEPFLQLPSRKEY
PDYYQQIKQPISLQQIRNKMKNNEYENLDQVDADLNLMFENAKRYNVPNSAIYKRVMKLQ
QLLQAKKKELVRRDETEDGDSMLSSATSDTGSAKRKSIKKNAKKHRMKILYSSVTEAREP
GSGRRLCDLFMVKPSKKDYPDYYKIILEPVDLKTIEHNIRSDKYLSEEALIEDMKRMFRN
ARHYNEEGSQVYNDAIILEKLLKDKRKELGSLPEDDEMASPKLKISRKTGVSPKKSKYLT
PLQQKLNELYEAVKNYTDKRGRRLSAIFLRLPSRAELPDYYVTIKKPVDMEKIKSHMMAN
KFQDVDSLVEDFVLMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGGEEYHVPNVSL
LIQELVHNLFVSVLNHQDDEGRCYSDSLAEIPGRDPANPSQPPLNFEIIRRNIDNNRYRR
LDVFQEHMFEVLEKARRLNRTDSEIYEDALELQHFFIKIRDELCKNGEILLTPALSYTTK
HLHSDAEKEKKEKLPKEMEEDKLKREEEKKEAEKSDDHAGGAWQSGLQRTYSQDCSFKNS
MYHVGDYVYVEPAEPNLQPHIVCIERLWQDDTGEKWLYGCWFYRPNETFHLATRKFLEKE
VFKSDYYSKVPVSKILGKCVVMFVKEYFKLHPEGFRGEDVFVCESRYSAKTKSFKKIKMW
TMPLSSVKFVPRDVPLPVVRVASVFASATKHEAEKPSDMTDETKGVDSSSIIDKEKEDVP
VDMPNGEPGCIYYEQLHYNDMWMKVGDCVFIKSHGLVRRRVGRIEKMWVRDGAAYFFGPI
FIHPEETEHEPTKMFYKKEVFLSNLEETCPMNCVLGKCAVSSFKDYLSCRPTEVPEDDVL
LCESRYNESDKQMKKFKGLKRFSLSAKVIDDEIYYFRKPVVPQKEPSPLLEKKIQELEAK
FAEQGADDDMEIGEEEGEVIETPTLPQLQTPMASELDIMPYTPPQSTPKSIKGTSKKEGS
KRKINMSGYILFSSEMRAVIKSQNPDFSFGELSRLVGTEWRNLEATKKADYEERAAKVAE
QQERERAAQQQQSGSPRAGTPVSALMGVVPPPTPMGMLNQNPVSGMMGGYGLPMQPLQGP
VDGMLSMGSMQPHHLGVSPLPHHLQPGMPGIPDLSYSGVNSMGGGPAGAYGQMGMHGQGQ
TAPPPYPGQTGQPALQQPSTPMFVAPPPKTQRLLHSEAYLKYIEGLHSETGTVSKWDQTL
TAQRKDVHLTKEQESRLPAHWLKSKGAHTTMADALWRLRDLMLRDTLNIRHAYNIEHA
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgatccaaaggtgttgcttctatgggttccaaaaggagaagggcaacatcccct
tccagcagtgtaagtgggggggactttgatgaaggacagacttcaacctcaaccccagtg
agtggcagaaagaggagaagagcatctaatatcccaactgtcgatccagtaagtggattt
cacagtattgtaccgcctttacaaagagacaatgagcacagcggacggaaaaagattgca
gtttgccacgaactttataataccatcagagattacaaagatgaccacggaagacttcta
tgtgaactctttataagagctccaaaacgaaggaaccagcccgactattatgaaattgtc
actcagcccattgacttgatgaaaatacaacaaaaattgaaaacggaggaatatgatgac
gttgatcagctgactgcagactttcagttgttgttcaacaatgcaaagagctactacaag
tcggacagcccggagtacaaagcagcctgcagactgtgggatctgtacctgagaacaaag
aatgagtttgttcagcgaggagattatgaggaggataatgaggatggggaagacacacag
gaaaaccctggaacgtctactgaggaggaggctccgccaagctgtttaaaagagattctg
gagcagcttcttgaagctgtggttactagtgctgagccttctggacgcttgatcagcgag
ttgtttcagaaactgccctccaaagtgcattacccagactattacgcaatcattaaagag
ccaatagatcttaaaacaattgctcagaggatacagggtggtttttataaaagcgtgact
gcaatggccaaggacattgatcttttagtaaaaaatgcaaaaacatacaatgagccagga
tcccaggtttttaaggatgcaaacaccatcaagaaaatttttattcagaagaaaactgaa
attgagcatgcagagcccactaagtcaagtcttcgaatcagaaacaggagatctgctcaa
ggggaccgcctgtccgctataaccatggctttacagtacggttctgagagtgacgaggat
gcgcttctagctggagctgtccgttatgatgaaggggagtccgaagtagagagcatgagt
tcctgcatggagatgtccaaccccatcttccagctatatgaggcagtccgaggtggtcgc
aacagccaaggacagctagtagcagagccctttctccagttaccttccaggaaggaatat
ccagattactaccaacaaatcaaacagccaatctcccttcagcaaataagaaacaagatg
aagaacaatgaatacgagaatctggatcaagtagatgcagatctgaatctcatgtttgaa
aatgccaagcgctacaatgttcctaactctgccatctacaagcgagtcatgaagctacag
cagctcctgcaggcgaagaaaaaggagcttgtgaggagagacgagactgaggatggagac
agcatgctctcttcagccacatccgacacgggcagcgcaaagaggaagagcatcaagaaa
aatgcaaagaagcatcggatgaaaatcctgtacagttcagttacagaggcccgtgagcct
ggctcaggcaggcggctgtgtgatcttttcatggtcaagccctccaagaaggactatccg
gattactataaaatcatcctagagcccgtggacctaaaaacaattgagcacaacattcgc
tcagataaataccttagtgaggaggccttgatcgaggatatgaagcggatgttccggaat
gcacggcactataatgaggaaggctcccaggtatacaatgatgccatcattctggaaaaa
ttattgaaggacaagagaaaagaactgggatcattacctgaagatgatgaaatggcttcc
ccaaaactgaaaataagcagaaaaactggtgtttctcccaaaaagtcaaaatacctgact
cctttgcagcagaaactaaatgagttgtatgaagctgtgaagaactacacagacaagagg
ggccgtcgcctgagcgcaatcttcttgaggctaccgtcccgagcggagctccctgactac
tatgtcaccatcaaaaagccagttgacatggagaagatcaagagccacatgatggccaac
aagttccaagatgtagactcgttggtggaagactttgtgctgatgtttaataacgcttgt
acctacaatgagccagaatctctgatttataaagatgctcttgtgctccacaaggtcctg
ttggagactagaagagacctggaaggaggggaagaatatcatgtccccaatgtgtccctt
ttgatacaggagctggtccataacctgtttgtgtctgtgctgaaccaccaggatgatgaa
gggcgctgctacagtgactctctggcagagattccaggaagagaccctgctaaccccagc
cagccacccttaaactttgaaatcatcagaaggaacattgacaacaaccgttacaggagg
cttgatgtgttccaggaacatatgtttgaagttctggagaaagcaagaagactaaacaga
acggattcagaaatttacgaggatgccttagagctgcagcacttcttcattaaaatccgc
gatgaactgtgcaagaacggggagatcctgctgactccagcactcagctatacaaccaag
cacctccacagtgacgcagagaaggagaagaaggaaaaactaccaaaagagatggaagaa
gataaactgaagagggaagaagaaaagaaagaagctgagaagagcgatgatcatgctgga
ggtgcttggcagtctgggcttcagcgcacatacagccaggactgcagctttaagaacagc
atgtaccatgtaggagactatgtgtacgtggaaccagcagagccaaacctgcagcctcat
atagtctgcattgagaggctctggcaggacgatactggtgagaagtggttgtatggctgc
tggttttacagacctaatgaaacgttccacctggcaacacgcaagttcttggagaaagaa
gtatttaagagtgattactacagcaaagtccctgtcagcaaaatacttggaaagtgtgtg
gttatgtttgtaaaggaatactttaagcttcatcctgaagggtttaggggtgaggatgtg
tttgtttgcgagtcacgttattcagccaagaccaagtctttcaagaaaatcaaaatgtgg
accatgcccctaagttccgtgaagtttgtccctcgtgacgtgccgttgccagtggttcgg
gttgcttcagtgttcgccagtgctactaaacatgaagcggaaaagccttctgacatgaca
gacgaaaccaaaggtgtggattccagcagcatcattgataaggagaaagaagatgtaccc
gttgacatgcccaatggggagcctggctgtatatattatgaacagctccattacaatgac
atgtggatgaaggtgggagattgtgtctttattaagtcccatggcttagtacgtcgtaga
gtgggaaggattgagaagatgtgggttcgagacggtgctgcttacttctttggccctatc
tttatccacccagaggagactgagcatgagccaaccaaaatgttctacaagaaagaagtg
tttctgagtaaccttgaagaaacctgccctatgaactgtgtactagggaagtgtgccgtg
tcctcgtttaaggactatctctcctgccggcccactgaagtgccggaagatgatgtactg
ctctgtgagagtcgctacaatgaaagcgacaagcagatgaagaagtttaaaggcttgaaa
cgcttctccctgtctgcaaaagtcatagatgatgaaatatattacttcagaaagccagtt
gtacctcagaaggagccttctccactgctggagaagaagattcaagagctggaggcaaag
tttgctgagcaaggagctgacgatgacatggagattggggaagaggagggagaggttatt
gaaactccaactctgcctcagctacaaactcctatggccagcgaactggacataatgcca
tatactccaccccagtccactccgaaatccattaaaggcaccagtaagaaggaaggctcc
aagaggaagatcaacatgagtggttacattctgttcagcagcgagatgagggcagttata
aaatcccagaacccggacttttctttcggtgagctcagtcgactggtggggactgaatgg
agaaatctggaagcaaccaagaaggcagactatgaagagcgggcagcaaaggtggcagag
cagcaagagagagagcgcgcagctcagcagcagcagtctggttctcctcgggcaggtacc
ccagtcagtgcattaatgggggtggtgcctcccccaacccccatgggaatgctaaatcaa
aatcctgtgtcaggcatgatgggtggctatgggctgcccatgcaacccttacaaggccca
gttgatggcatgctcagcatgggcagcatgcagccacatcaccttggggtgtctccttta
ccccatcatcttcagccaggtatgccaggcataccggacctgtcttattcgggtgtaaac
tccatggggggaggtcccgcaggtgcatatggacagatgggcatgcatgggcagggccag
acagctccacctccctacccaggtcagacagggcagccagcactgcagcagccgtccaca
ccaatgtttgtggcacctcctccaaagacacagcgcttactgcactcggaggcctatctg
aagtacatcgaggggcttcattctgagactgggactgttagcaaatgggaccagacactt
acagcacaaagaaaagacgtccatctgacgaaagagcaggagagccgtctgccagctcat
tggttaaagagtaagggggctcacacgaccatggccgatgcactgtggcgtctacgagac
ctgatgctacgagatactttgaatatccgccatgcttacaacatagaacatgcttaa
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integrated database retrieval system
