Polyodon spathula (Mississippi paddlefish): 121329124
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Entry
121329124 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5-like
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121329124
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121329124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
DUF1087
Chromo
ResIII
HDA2-3
HTH_Hrp3
DEAD
Chromo_MIT1
AAA_22
Motif
Other DBs
NCBI-GeneID:
121329124
NCBI-ProteinID:
XP_041130431
LinkDB
All DBs
Position
16:complement(10182534..10199162)
Genome browser
AA seq
1495 aa
AA seq
DB search
MCPPLKGKVQRILHWVWGEPPLPPECPPGSGSADPRAPRPPLKGHPERELYVKWAGLSYW
HCSWVSELQLELYHTVMYRNYQRKNDMDEPPPYDYGSDNEEMKSEKRKSKDPQYALMEER
FYRYGIKPEWMIIHRVFNHSFDSNGDVHYLIKWRDLPYDQCTWEIDNFDIPEYNHFKQAY
WNHRDLMLGEDIRPPGIKKWRKMKDDKPPEIPNVDPTIKFDKQPWYIDSTGGSLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYREGHSKGPYLVSAPLSTIINWER
EFEMWAPDFYVVTYTGDKDSRAVIRENEFSFEETPVKMGRKVFRMKKDTQIKFHVLLTSY
ELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPERFNNLDGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPSKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVLPNGSYDGNSLVRSSGKLTLLQTMLRKLKDGGHRVLIFSQMTKMLDLLEDFLEYEGYK
YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN
DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDDVEGARTNGDNKDGEEGNVIHYDDNAISTLLDRSQDATDDTEL
QNMNEYLSSFKVAQYVVREEDGEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN
LGKGKRVRKQVNYNDTSQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQL
KSDRDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKS
EKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHI
NGKYSTPDLILDGAEMKKLTESVSSDPNTPVPASPAVTQPGTPVPTAEKTETPSGPAEEK
EPPELEVKKPAGPEVPSSSESSPSSEKPSPADESKERGLEEGENPEQASEHPATTGEACK
ESERPPEKAESNNISSREEDKDPQPAEEVKKEETLENQQNGEKEGKEEEEGRKDEKNGKM
KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLSGIVTHGYARWQDIQN
DPRYVILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDSSHP
AIALNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSM
LSRIPPVAARLQMSERSILSRLTNRGNEPPPQQPFPQGSFSCSQMYGNSFGASFRGPGAG
GIVNYSQMPLGPYVSASTNGPPLSHSERKLSESLKDGALPEHKGGKPSDVICIED
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccgcccctgaaaggcaaggtacagcggatcctgcactgggtatggggggagccc
cccctgcccccggagtgcccgccaggctctggatctgcggaccccagggcgccccggccc
cccctgaaggggcaccctgagagggagctgtatgtcaagtgggccgggctgtcctactgg
cactgctcgtgggtcagcgagctgcagctggagctgtaccacacggtgatgtaccgcaac
taccagcgcaagaacgacatggacgagccccccccttacgactacggctcggacaacgag
gagatgaagagcgagaaacgcaagagcaaggacccccagtatgccctcatggaggagcgc
ttctaccgctacgggatcaaaccagagtggatgatcattcacagggtcttcaaccacagc
ttcgatagcaatggagacgtccactacctgatcaagtggagggacttgccttacgaccag
tgcacctgggagattgacaactttgacattccagaatacaaccatttcaaacaagcctac
tggaaccacagggacctgatgctgggagaggatatccgacccccaggaatcaagaaatgg
aggaagatgaaggacgacaaacccccggagatccccaatgtggaccccacaatcaagttt
gacaagcagccgtggtacatcgactcgacggggggcagcctgcacccctaccagctggag
gggctcaactggctgcgcttctcctgggcgcagggcaccgacaccatcctggcagacgag
atggggctgggcaagaccgtgcagaccatcgttttcctctactcgctctacagggaggga
cactccaaggggccgtacctggtcagcgccccgctgtccaccatcattaactgggagcgc
gagtttgagatgtgggctccggacttctacgtggtcacctacaccggggacaaggacagc
cgcgcggtcatccgcgagaacgagttctccttcgaagagacccctgtcaagatgggccgc
aaggtctttcgcatgaagaaggacactcagatcaagttccacgtgctgctgacctcctac
gagctgatcaccatcgaccaggccatcctgggctccatcgagtgggcctgcctggtggtg
gacgaggctcaccgcctcaagaacaaccagtcaaagttctttcgagtgctgaatggctac
aagatctactacaagctgctgctgacagggacccccctgcagaataacctggaggagctc
ttccacctgctcaacttcctcacccccgagaggttcaataacctggacggattcctggag
gagtttgctgacatctcgaaggaggaccagatcaagaagctgcacgacctgctggggccc
cacatgctgaggaggctgaaggccgacgtcttcaagaacatgccgtccaagacagagctg
atcgtgcgcgtggagctgagccccatgcagaagaagtactacaagttcatcctgacgcgg
aacttcgaggctctgaactcgaaagggggcgggaaccaggtgtctctcctcaacatcatg
atggacctgaagaagtgctgcaaccacccctacctgttccccgtcgctgctgtggaggct
ccagtgctgcccaatggctcctatgatgggaactcgctggtcaggtcctcagggaaactc
acgctgctgcagaccatgctgaggaagctgaaggacggaggacacagggtcctcatcttc
tcacagatgacgaagatgctggacctgctggaggacttcctggagtacgaggggtacaag
tacgagaggatcgacggggggatcacgggggggctgcggcaggaagccatcgaccgcttc
aacgctcctggcgctcagcagttctgcttcctgctctccactcgggcgggggggctgggc
atcaacctggcgacagccgacacggtcatcatctacgactctgactggaacccccacaac
gacatccaggcgttcagccgagctcaccggatcgggcagaacaagaaggtgatgatctac
cgcttcgtgacgcgggcctcggtggaggagcgcatcacgcaggtggccaagcgcaagatg
atgctcacccacctggtggtgcggcccggcctgggctccaagaccggctccatgtccaag
caggagcttgatgacatcctcaagttcggcacagaggagctgttcaaggatgacgtggag
ggagcccggaccaacggtgacaataaggacggtgaggagggcaacgtgattcactatgat
gacaacgccatctccacactgctggaccgcagccaggacgccactgacgacacagagctg
cagaacatgaacgagtacctcagctcctttaaagtggcgcagtacgtggtgcgggaggag
gatggcgaggaggaggtgcagcgagagattatcaagcaggaggagaacgtggatcctgat
tactgggagaagctgctgaggcatcactacgagcagcagcaggaagacctggccaggaac
ctgggcaagggcaagagggtgcgcaagcaggtcaactataacgatacctcccaggaggac
caagagtggcaggatgatctttcagacaatcagtcagagtactccgtgggatctgaagat
gaggatgaagattttgaggagagaccggaaggaggacgcaggcagtctcgcagacagctc
aagagtgaccgggacaaaccactccctcccctgctggccagagtcgggggcaacattgag
gtcctggggttcaacacccggcaacggaaagccttcctgaatgccatcatgcgctggggg
atgccgccccaagacgccttcaactcccactggctggtgagagacctgcggggcaagagc
gagaaagagttcagggcctacgtgtccctcttcatgcgacacctgtgtgagccgggggct
gacggagcggagaccttcgcagacggggtcccgcgagaggggctgtcccgccagcacgtt
ctcacgcgcatcggggtcatgtctctcgtgagaaagaaggtccaggagttcgagcacatc
aatgggaagtacagcacccccgacctgattctcgacggagccgagatgaagaaactgacg
gagagcgtctcatcggaccccaacactcctgtacctgccagccctgccgtcacccagcct
ggcacacctgtacccacagcagaaaagacagagactccgtcgggaccagcagaggagaag
gagcccccagagctggaggtgaagaaaccagccgggcctgaggtccccagcagcagcgag
tcttcccccagctcagagaagccctccccagcggatgagagtaaggagagagggctggag
gagggtgagaatcctgaacaggcctcggagcaccctgctaccacaggggaggcttgtaaa
gagagcgagagacctccggagaaggcagagagcaacaacatctcgagtagagaagaggac
aaggacccgcagccagcagaggaggtgaagaaggaagagacgctggaaaaccagcagaac
ggagagaaagaagggaaggaggaagaggaggggaggaaagacgagaagaacggcaagatg
aagttcatgttcaacatcgcggatggcggattcacagagctgcacacgctgtggcagaac
gaggagcgggcggccgtgtcgtcagggaagatctacgacatctggcaccgaagacacgac
tactggctgctctccggcatcgtaacgcacggctacgcgcgctggcaggacatccagaac
gacccccgctacgtcatcctcaacgagcccttcaagtctgaggtgcacaagggcaactac
ctggagatgaagaacaagttccttgcgcgccgcttcaagctcctggagcaggccctggtg
attgaggagcagctccgacgcgctgcctacctcaacatgacgcaggactccagccacccc
gccatcgctctgaacgcccgcttcgcagaagtggagtgcctggctgagagccaccagcac
ctgtccaaggagtccctggcagggaacaagcccgccaacgcagtcctgcacaaggtgttg
aaccagttggaggagctgctgagtgatatgaaggcggatgtgacgaggctgccctccatg
ctgtcgcggatcccccccgtcgcggcacgcctgcagatgtccgagcgcagcatcctgagc
cggctgaccaaccggggcaacgagccccctccccagcagcccttccctcaaggctctttc
agctgctctcagatgtacggcaacagctttggggcaagcttccgagggccaggagccggg
gggatcgtcaactacagccagatgcctttaggaccctacgtgtcggcctctacgaacggg
cctcccttgagccactctgagaggaagctgagcgagtctctgaaggacggggccttgccg
gagcacaaagggggcaaacccagcgacgtgatctgcatcgaagactag
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integrated database retrieval system
