Polyodon spathula (Mississippi paddlefish): 121329166
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Entry
121329166 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5-like isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121329166
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121329166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
HMG_box
AAA_22
Motif
Other DBs
NCBI-GeneID:
121329166
NCBI-ProteinID:
XP_041130504
LinkDB
All DBs
Position
16:complement(9974611..10003478)
Genome browser
AA seq
1811 aa
AA seq
DB search
MEEWGLENVDYGFTEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSS
NNPLKGLSAAAAAAAVAAAVETVAVSPPVPQPAQPGAIRKAKTKEGKGPGVRKKSKSTKE
AKKRGKSKKMKIRLGGFGSKRKKGSSSEEDEREESDFDEGSIHSASVRSEASLQQKRKGR
RGQQKKKKIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWS
CPHCEKEGIQWEPKEEEEEEEEVGEEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLN
PPLPEIPNGEWLCPRCMCPPLKGKVQRILHWVWGEPPLPPECPPGFGSADPRAPRPPLKG
HPERELYVKWAGLSYWHCSWVSELQLELYHTVMYRNYQRKNDMDEPPPYDYGSDNEEMKS
EKRKSKDPQYALMEERFYRYGIKPEWMIIHRVFNHSFDSNGDVHYLIKWRDLPYDQCTWE
IDNFDIPEYNHFKQAYWNHRDLMLGEDIRPPGIKKWRKMKDDKPPEIPNVDPTIKFDKQP
WYIDSTGGSLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYREGHSKG
PYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKDSRAVIRENEFSFEETPVKMGRKVFR
MKKDTQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNGYKIYY
KLLLTGTPLQNNLEELFHLLNFLTPERFNNLDGFLEEFADISKEDQIKKLHDLLGPHMLR
RLKADVFKNMPSKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLK
KCCNHPYLFPVAAVEAPVLPNGSYDGNSLVRSSGKLTLLQTMLRKLKDGGHRVLIFSQMT
KMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLA
TADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTH
LVVRPGLGSKTGSMSKQELDDILKFGTEELFKDDVEGARTNGDNKDGEEGNVIHYDDNAI
STLLDRSQDATDDTELQNMNEYLSSFKVAQYVVREEDGEEEVQREIIKQEENVDPDYWEK
LLRHHYEQQQEDLARNLGKGKRVRKQVNYNDTSQEDQEWQDDLSDNQSEYSVGSEDEDED
FEERPEGGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAIMRWGMPPQ
DAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRI
GVMSLVRKKVQEFEHINGKYSTPDLILDGAEMKKLTESVSSDPNTPVPASPAVTQPGTPV
PTAEKTETPSGPAEEKEPPELEVKKPAGPEVPSSSESSPSSEKPSPAEESKERGLEEGEN
PEQASEHPATTGEACKESEGPPEKAESNNISSREEDKDPQPAEEVKKEEALENQQNGEKE
GKEEEEGRKDEKNGKMKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLL
SGIVTHGYARWQDIQNDPRYVILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQ
LRRAAYLNMTQDSSHPAIALNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLE
ELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRGNEPPPQQPFPQGSFSCSQ
MYGNSFGASFRGPGAGGIVNYSQMPLGPYVSASTNGPPSSHSERKLSESLKDGALPEHKG
GKPSDVICIED
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtgggggctggagaacgtggactatggcttcacagaggaggactaccacact
ctgacaaactacaaagcattcagccagttcctgaggcctctcattgccaagaagaacccc
aagatccctatgtctaagatgatgacggtcctgggggcgaagtggcgcgagttcagcagc
aacaacccgttgaagggcctgtctgctgctgccgccgccgcagccgtggctgctgccgtg
gaaaccgtggctgtgtccccgcccgtccctcagcccgcgcagcctggagcaatcaggaaa
gccaaaaccaaggaagggaaaggcccgggggtgagaaagaaaagtaaaagcaccaaggaa
gccaaaaagagaggcaagagcaagaagatgaaaatcagactgggtgggttcgggagcaag
cggaaaaagggctcctcgagcgaggaggatgagcgggaggagtctgatttcgacgagggc
agcatccacagcgcctcggtgcgctccgaggcttccctgcagcagaagaggaaggggcgc
aggggccagcagaaaaagaagaagattgaagaaggggacggttacgaaacggatcaccag
gactactgcgaggtgtgccagcagggcggagagatcatcttgtgtgacacctgtcctcga
gcctaccacctggtgtgcctggatcccgagctggagaaggctccagaggggaagtggagc
tgcccgcactgcgagaaggaagggatccagtgggagcccaaggaggaagaggaggaagag
gaggaggtgggggaggaggaagaggacgaccacttggagttctgccgggtgtgcaaggat
gggggggagctgctgtgctgtgacacctgcccctcctcctaccacatccactgcctcaac
ccgcccctgccagagatacccaacggggagtggctctgcccacgatgcatgtgcccgccc
ctgaaaggcaaggtacagcggatcctgcactgggtatggggggagccccccctgcccccg
gagtgccccccaggctttggatctgcggaccccagggcgccccggccccccctgaagggg
caccctgagagggagctgtatgtcaagtgggccgggctgtcctactggcactgctcgtgg
gtcagcgagctgcagctggagctgtaccacacggtgatgtaccgcaactaccagcgcaag
aacgacatggacgagccccccccttacgactacggctcggacaacgaggagatgaagagc
gagaaacgcaagagcaaggacccccagtatgccctcatggaggagcgcttctaccgctac
gggatcaaaccagagtggatgatcattcacagggtcttcaaccacagcttcgatagcaat
ggagacgtccactacctgatcaagtggagggacttgccttacgaccagtgcacctgggag
attgacaactttgacattccagaatacaaccatttcaaacaagcctactggaaccacagg
gacctgatgctgggagaggatatccgacccccgggaatcaagaaatggaggaagatgaag
gacgataagcccccggagatccccaatgtggaccccacaatcaagtttgacaagcagcca
tggtacatcgactcgacggggggcagcctgcacccctaccagctggaggggctcaactgg
ctgcgcttctcctgggcgcagggcaccgacaccatcctggcagacgagatggggctgggc
aagaccgtccagaccatcgtcttcctctactcgctctacagggagggacactccaagggg
ccgtacctggtcagcgccccgctgtccaccatcattaactgggagcgcgagttcgagatg
tgggctccggacttctacgtggtcacctacaccggggacaaggacagccgcgcggtcatc
cgcgagaacgagttctccttcgaagagacccctgtcaagatgggccgcaaggtctttcgc
atgaagaaggacactcagatcaagttccacgtgctgctgacctcctacgagctgatcacc
atcgaccaggccatcctgggctccatcgagtgggcctgcctggtggtggacgaggctcac
cgcctcaagaacaaccagtcaaagttctttcgagtgctgaatggctacaagatctactac
aagctgctgctgacaggaacccccctgcagaataacctggaggagctcttccacctgctc
aacttcctcacccccgagaggttcaataacctggacggattcctggaggagtttgctgac
atctcgaaggaggaccagatcaagaagctgcacgacctgctggggccccacatgctgagg
aggctgaaggccgacgtcttcaagaacatgccgtccaagacagagctgatcgtgcgcgtg
gagctgagccccatgcagaagaagtactacaagttcatcctgacgcggaacttcgaggct
ctgaactcgaaagggggcgggaaccaggtgtctctcctcaacatcatgatggacctgaag
aagtgctgcaaccacccctacctgttccccgtcgctgctgtggaggctccagtgctgccc
aatggctcctacgatgggaactcgctggtcaggtcctcagggaaactcacgctgctgcag
accatgctgaggaagctgaaggacggaggacacagagttctcatcttctcacagatgacg
aagatgctggacctgctggaggacttcctggagtacgaggggtacaagtacgagaggatc
gacggggggatcacgggggggctgcggcaggaagccatcgatcgcttcaacgctcctggc
gctcagcagttctgcttcctgctctccacgcgggcgggggggctgggcatcaacctggcg
acggctgacacggtcatcatctacgactctgactggaacccccacaacgacatccaggcg
ttcagccgagctcaccggatcgggcagaacaagaaggtgatgatctaccgcttcgtgacg
cgggcctcggtggaggagcgcatcacgcaggtggccaagcgcaagatgatgctcacccac
ctggtggtgcggcccggcctgggctccaagaccggctccatgtccaagcaggagcttgat
gacatcctcaagttcggcacagaggagctgttcaaggatgacgtggagggagcccggacc
aacggtgacaataaggacggtgaggagggcaatgtgattcattatgatgacaacgccatc
tccacactgctggaccgcagccaggacgccactgacgacacagagctgcagaacatgaac
gagtacctcagctcctttaaagtggcgcagtacgtggtgcgggaggaggatggcgaggag
gaggtgcagcgagagattatcaagcaggaggagaacgtggatcctgattactgggagaag
ctgctgaggcatcactacgagcagcagcaggaagacctggccaggaacctgggcaagggc
aagagggtgcgcaagcaggtcaactataacgatacctcccaggaggaccaagagtggcag
gatgatctttcagacaatcagtcagagtactccgtgggatctgaagatgaggatgaagat
tttgaggagagaccggaaggaggacgcaggcagtctcgcagacagctcaagagtgaccgg
gacaaaccactccctcccctgctggccagagtcgggggcaacattgaggtcctggggttc
aacacccggcaacggaaagccttcctgaatgccatcatgcgctgggggatgccgccccaa
gacgccttcaactcccactggctggtgagagacctgcggggcaagagcgagaaagagttc
agggcctacgtgtccctcttcatgcgacacctgtgtgagccgggggctgacggagcggag
accttcgcagacggggtcccgcgagaggggctgtcccgccagcacgttctcacgcgcatc
ggggtcatgtctctcgtgaggaagaaggtccaggagttcgagcacatcaacgggaagtac
agcacccccgacctgattctcgacggagccgagatgaagaaactgacggagagcgtctca
tcggaccccaacactcctgtacctgccagccctgccgtcacccagcctggcacacctgta
cccacagcagaaaagacagagactccatcgggaccagcagaggagaaggagcccccagag
ctggaggtgaagaaaccagccgggcctgaggtccccagcagcagcgagtcttcccccagc
tcagagaagccctccccagcggaggagagtaaggagcgagggctggaggagggtgagaat
cctgaacaggcctcggagcaccctgctaccacaggggaggcttgtaaagagagcgaggga
cctccggagaaggcagagagcaacaacatctcgagcagagaagaggacaaggacccacag
ccagcagaggaggtgaagaaggaagaggcgcttgaaaaccagcagaacggagagaaagaa
gggaaggaggaagaggaggggaggaaagacgagaagaacggcaagatgaagttcatgttc
aacatcgcggatggcggattcacagagctgcacacgctgtggcagaacgaggagcgggcg
gccgtgtcgtcagggaagatctacgacatctggcaccgaagacacgactactggctgctc
tccggcatcgtaacgcacggctacgcgcgctggcaggacatccagaacgacccccgctac
gtcatcctcaacgagcccttcaagtctgaggtgcacaagggcaactacctggagatgaag
aacaagttccttgcgcgccgcttcaagctcctggagcaggccctggtgattgaggagcag
ctccgacgcgctgcctacctcaacatgacgcaggactccagccaccccgccatcgctctg
aacgcccgcttcgcagaagtggagtgcctggctgagagccaccagcacctgtccaaggag
tccctggcagggaacaagcccgccaacgcagtcctgcacaaggtgttgaaccagttggag
gagctgctgagcgatatgaaggcggatgtgacgaggctgccctccatgctgtcgcggatc
ccccccgtcgcggcacgcctgcagatgtccgagcgcagcatcctgagccggctgaccaac
cggggcaacgagccccctccccagcagcccttccctcaaggctctttcagctgctctcag
atgtacggcaacagctttggggcaagcttccgagggccaggagccggggggatcgtcaac
tacagccagatgcctttaggaccctacgtgtcggcctctacgaacgggcctccctcgagc
cactctgagaggaagctgagcgagtctctgaaggacggggccttgccggagcacaaaggg
ggcaaacccagcgacgtgatctgcatcgaagactag
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integrated database retrieval system
