Polyodon spathula (Mississippi paddlefish): 121329277
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Entry
121329277 CDS
T07273
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03030
DNA replication
pspa03410
Base excision repair
pspa03420
Nucleotide excision repair
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121329277 (rfc1)
03410 Base excision repair
121329277 (rfc1)
03420 Nucleotide excision repair
121329277 (rfc1)
03430 Mismatch repair
121329277 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121329277 (rfc1)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121329277 (rfc1)
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121329277 (rfc1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121329277 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
RuvB_N
AAA_22
Rad17
BRCT_2
AAA_33
AAA_17
AAA_5
AAA_18
RNA_helicase
nSTAND3
AAA_14
AAA_30
AAA_16
AAA_7
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
121329277
NCBI-ProteinID:
XP_041130748
LinkDB
All DBs
Position
2:complement(5617656..5637698)
Genome browser
AA seq
1089 aa
AA seq
DB search
MDIRKFFVVTQQKKPASEPAKNGKSKSEYDGKKKHDLSKVKSLNSDDDSAKKTKQQGNKK
KRIIVDLDSEEEVPVKKHRKLSKESPSEPKSSSKPAHPPKKDPVVYVSETDEEDFESLKQ
PQKRKENGLSTSSPPGSTGRAVEVKPPAKAVTPAKCTPMSVLEYFGGSSVQRSDKKLVAT
TKRKAPTGSTDDSTNEDEAVARQLQMDEDAELERQLHEDEDFARTLAMLDEPPKPKKART
ESTSLPVKTSPVKPDRATIKQEEPSGSAKDHLSKKASPSKASSKLVLMKRKEETLKKETP
VKVKTVSPKKEEVVTPKTERTSPKKSESNSPEDSEKKKKRQNVQAYRSYLNREGPRALGA
KEIPKGADNCLEGLVFVLTGVLESMERDDAKSLIERYGGKVTGSISKKTSYLVLGRDSGV
SKTEKAESLGTKILDEDGLLDLIRKQPGRRSKYEIAAEAENKKSTLKTPEKPAKQTESAK
RKTPTPPKRGSSPSAVAGKKGLSFQPSSLEKVQTPAPSESKGESLLWVDRYKPTSLKNII
GQQGDQSCANKLLRWLRNWHQNTASDKKPAAKFSKFGGKDDGSTFKAALLSGPPGVGKTT
TAVLVCEELGFSYVEQNASCTRSKNSLKVVIAESLNNTSIKNFYSGASQMVSSKHVLIMD
EVDGMAGNEDRGGIQELIGLIKNTKIPIICMCNDRNHQKIRSLVNYCFDLRFQRPRVEQI
KGAMMSIAFKEGLKVPPPALNEIILAANQDIRQVLHNLSMWSARDKVFTYDQAKSDSSNA
RKDIKMGPFDVCRKVFAAGDETAHMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGN
VKKHLMLLSRTADSICDGDLVDRQIRSKQMWTLLPTQAIYASVLPGELMRGYMAQFPTFP
SWLGKFSVTGKHDRIIQELSMHMCLRTQASKRAVNMEYLPFLRDSLVRPMAGRGTEGVPE
AVQLMDDYCLMKEDVDNIMEISTWGGRPDPFSKLDPKVKSAFTRTYNKEVHLTPYSLHTV
KKGKRGAGSSVELGDEFGTEDTQPEEKESEDTIETDAMIKQKKAKSSKSTKEAKTDDSGK
GKGKAKKTK
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggaaattctttgtagttacgcagcaaaaaaaacctgcaagcgagccggca
aagaacggtaaatccaagagtgaatatgatggcaagaagaagcatgacttgtccaaggtg
aagagtctgaacagtgatgatgattctgcaaaaaaaacgaagcaacaaggaaacaagaag
aaacgcattatcgttgacttagattctgaagaggaggtgccggtaaagaaacacaggaaa
ctgtctaaggaatcccccagtgaacccaagtcttcatccaaacctgcacaccctcccaaa
aaagaccctgttgtatatgtttcagaaacagatgaagaagactttgaatccttaaaacag
cctcagaaacgcaaagagaatggcctgtctacttccagtcctcccggtagtactggaaga
gcagtcgaagtgaagccccctgctaaagcagtgactccagcgaaatgcactcctatgtcg
gtgttggagtactttggaggcagcagtgtgcagaggtcagataaaaagctagtggccact
accaagagaaaagcacccacagggagcactgatgactccactaacgaagatgaggctgtt
gctcgccaacttcagatggatgaggatgcagagctggagagacaacttcatgaagacgaa
gattttgcaaggacactggcaatgctggatgagcccccaaaacccaaaaaggcaagaact
gagtctacatctctacctgttaagacaagtccagtcaaaccagacagagccactatcaaa
caagaagagccgagtggcagtgcaaaggaccacctttccaagaaagcctcgcccagcaaa
gccagctccaagttggtgcttatgaagcggaaagaagaaacattgaaaaaggaaacgccg
gtgaaagtgaagaccgtttcacccaagaaagaagaagtggtcacccccaaaacagagaga
acgtcgcccaagaaatctgagtctaacagtcccgaagactcggaaaagaaaaagaaacgg
cagaacgtgcaggcttatcgcagctacttgaacagagagggcccaagagcactgggagca
aaagagatacccaaaggtgcagataattgcctggaggggctggtgtttgtgctgacgggg
gtcctggagtccatggaacgagatgatgccaagtccctgattgagcgatacggtgggaaa
gtgaccggaagcatcagcaagaagaccagctatttggtgctgggcagagacagcggcgtg
tctaaaacagaaaaggcagaaagtttggggaccaaaattcttgatgaagatggcctgctc
gatctgattcgtaaacagcctggcaggagatccaagtatgagatagctgctgaagcggag
aataagaagtccacgctgaaaaccccagagaagcctgcaaagcagacagagtctgcaaag
agaaagactcccacgcctccaaagagagggagctctcccagtgctgtggcagggaaaaaa
ggcctgtccttccagccaagctcgctcgagaaggtgcagactccagccccaagtgaaagc
aaaggggagagcctgctctgggtggacaggtacaagcccacctccctgaagaacatcatc
ggacagcagggagaccagagttgtgccaataagctcctacgctggctccgcaactggcat
cagaacactgccagtgacaagaagccggcagcaaaatttagtaaatttggtggaaaagac
gacggctccaccttcaaggcagccttgctgtcaggtcctcctggtgtgggtaaaacgacc
actgctgtgctggtctgtgaggagctgggattcagctatgtggagcaaaatgccagctgc
acccgcagtaagaacagtctgaaggtggtgattgctgagtccctgaacaacaccagcatc
aagaacttctattcaggcgcctctcagatggtgagcagcaagcatgtgctgatcatggat
gaagtggatggaatggcaggcaatgaagacagaggtggaatccaggaactcatcggtctt
attaaaaacacaaagatccctattatctgcatgtgtaatgatcggaatcatcaaaagatc
agatccttggtcaattactgctttgatctccgtttccagaggccacgagtggagcagatt
aagggtgccatgatgtcaatcgctttcaaggaaggtttaaaggtcccgcccccggctcta
aatgaaatcatattggctgctaaccaggacatcaggcaggtgcttcacaatctcagtatg
tggtctgcccgagataaagtatttacttatgaccaggccaaaagtgactccagtaatgcc
aggaaagatattaagatgggcccctttgacgtctgccgaaaggtgtttgctgctggtgac
gaaactgctcatatgtccctgatagacaagtctgatctcttcttccacgactactctctg
gcacctctctttgttcaggagaactatgtccacgtcaagccggcagcagcaggtggcaat
gtgaaaaaacacctgatgctcttgagtagaactgctgacagtatttgtgatggagatcta
gtggacagacagattcgctcgaaacagatgtggacattgttacctacacaggccatttat
gccagcgtcctccctggagagctaatgagagggtacatggcacagtttcctaccttcccc
agctggttaggaaagttttcagtaacgggcaaacatgaccgcatcattcaagaactttca
atgcacatgtgtctgaggacccaggccagtaagcgggcggtgaacatggagtaccttcca
ttcttaagggactctctggtgaggccgatggcagggcgtgggacggagggggtccccgag
gctgtgcagctcatggatgactattgcctcatgaaggaggacgtggacaacatcatggag
atcagcacctgggggggccgcccagaccccttctccaagctggacccaaaggttaagtct
gccttcacccgtacctacaacaaggaggtacacctaaccccatactcgctgcatactgta
aagaagggaaaacgtggagcaggctcctccgtggagctgggagacgaattcggcacagag
gacacccaacctgaagaaaaggagtctgaagacactattgaaacggatgccatgattaag
caaaagaaagctaaatcttccaagtcaacaaaagaggcgaaaaccgatgattctggcaaa
gggaaggggaaagcaaagaaaaccaaatga
DBGET
integrated database retrieval system
