Polyodon spathula (Mississippi paddlefish): 121329300
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Entry
121329300 CDS
T07273
Name
(RefSeq) biglycan-like
KO
K08118
biglycan
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121329300
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121329300
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class I
121329300
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRRNT
LRR_9
LRR_5
LRR_14
Motif
Other DBs
NCBI-GeneID:
121329300
NCBI-ProteinID:
XP_041130779
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All DBs
Position
16:23332654..23362379
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AA seq
369 aa
AA seq
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MMSPLLPLLSLLVSSLALPFEQRGFLDFSLDAGEGGVPMMMMNDEEGSAFEEGTHALPGP
EPVCPFGCHCHLRVVQCSDLGLTSVPRNIPPDTALLDLQNNKITELKENDFKGLHNLYAL
VLVNNRISKVSGKAFQPLRRLQKLYFSKNLLTEVPQGLPPSLVELRIHENRIKSVHKGAF
KGLGSMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDFPASINELHLDHN
QIQAIELEDLIRYKSLYRLGLGYNHIRMIENGSLAFVPNLRELHLDNNRLSKIPANLPDM
RYLQVIYLHANNITQVGVNDFCPQGFGVKRAFYNGISLFSNPVNYWEVQPAAFRCVTDRL
AIQFGNYKK
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctcctctcctccctctcttgtccctgcttgtctcctctctcgcactccctttt
gagcagaggggtttcctagacttctcgctggatgctggcgaggggggggttccgatgatg
atgatgaacgatgaagagggctcagcctttgaggaggggacccatgcgcttcccggccca
gaaccagtctgcccctttggctgtcactgccacctgagagtggtacagtgctccgacctg
ggtctgacctcagttcccaggaacatacccccagacacagccctgttggacctgcagaac
aacaagatcacagagctgaaagaaaacgactttaaggggctccacaacctctacgcgctg
gtcctggtcaataaccgcatctccaaggtgagcgggaaggcttttcagcctctgaggagg
ctgcagaagctctacttctccaagaacctcctgactgaggtcccgcagggcctgcccccc
tcactggtggaactcagaatccatgagaacagaatcaagagcgtccacaagggggctttc
aagggactgggcagcatgaactgcatcgaaatggggggtaaccccttggagaacagcgga
tttgaacccggggcctttgatggactgaaacttaactacctgcgaatctctgaagccaaa
cttactggaattcccaaagatttcccagccagtatcaatgagctgcacctcgatcacaat
cagattcaagccattgagctcgaggacctcatcagatacaagagtctctacaggctgggt
ctggggtacaatcacattcgcatgattgagaatggcagccttgccttcgtcccgaatctg
agggagcttcacctggacaacaaccgactgagcaagataccagccaacctgccggacatg
agatacctgcaggtgatctaccttcatgctaacaacattacccaggtgggggtgaatgat
ttctgccctcaaggctttggtgtgaagagagctttctacaacggcatcagcctcttcagc
aaccctgtcaattactgggaggtgcagcctgcagccttccgctgtgtcaccgacagactg
gctatacagttcggcaactacaagaagtaa
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