Polyodon spathula (Mississippi paddlefish): 121329510
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Entry
121329510 CDS
T07273
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121329510
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
121329510
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
121329510
NCBI-ProteinID:
XP_041131038
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All DBs
Position
2:6181989..6307798
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AA seq
1952 aa
AA seq
DB search
MASPGLEAEGNQLQHRDASHEARKWIEAVTGRCFGEKGFRSGLENGILLCELLNSIKPGL
VKKINRLPTPIAGLDNITLFLRGCEELGLKDTQLFDPSDLQDTSIRANIKGSDCCRKLKN
VLITIYWLGKATNSCASYSGPTLNLKEFEGLLLQMRKEAEDMESPKRSIRDSGYIDCWDS
ERSDSLSPPRHGRDDSFDSLDSLGSRSQQTPSPDVVIRGSSDGRGSDSESDVPHRRMPDT
RKDDMLARRTSCNEPRSAMPFNQYLPNKSNHSAYVPTPLRKKAAEREEYRKSWSTATSPI
GGERPFSHPETIEEENCEDDGRAPCKRRAWPEEVPRAVTSRVDNVQFQEIGRTQAQTDGP
KESLQHQWEGMDEEEVKRLQRLEKAGIRVLPASVRYSSPKPVIEESQSAPLDIILRRDND
FLKHQQGRESDSEEEEQEQRLPDIEKDDLASRKARMNQLKPKVPHNQFLPMPCSKSEEKW
ENIKKATHRITSSSLDRQQQGVTSESQAQVQCPGPSEILTRRENPFLKPVQNDSEEEGQG
GQVTVPNVQRDDLAKRRAQSGPAPYRETQPFVKASITQSDLEKWERLKLSTDTSESQAQV
QSPGPSEILTRRENPFLKPVQNDSEEEGQGGQVTVPNVQRDDLAKRRAQSGPAPYRETQP
FVKASITQSDLEKWERLKLSTDTSESQAQVQSPGPSEILTRRENLFLKPVQNDSEEEGQG
GQVTVPNVQRDDLAKRRAQSGPAPYRETQPFVKASITQSDLEKWERLKLSTDTSEETSKP
LCQACMDKGLPVIEAETAALDDLASRRARANRKALGSKQRFVHFGPVTEIDQKCWEKLSI
ARAESESETSGYGSHSEAEASRCLVSAASYSIQHIEQVASEPKQSFTAECCPRSSSFVQA
VCTPTRQEWAQRPAETQEDSEEEGQEERQPNPEKDDMLARRTGAFQKTTSSPTFNKFLPM
PASLQPKQEGPKGTIKEEIIKQSSSALLSPVDQFRQVAPVSTATVGVTTKESPRTTGTFL
QLRKREMANEEEEQQEEEAAVKESFPDLEKDDMMSRHALVSHRQTATAARQFLPVPASQQ
TRTSEASQFLPVPAYQQTRTSEASKDDGKPQRRPSWLDDDLPPTYSHRASVSDDAESMSM
IDMRCEEEAILQPHSKARYEHLHNLHNRLREEEDKWQDDLARWKNRRRSASQDLIKKEEE
RKKVERLMSGDRELSERRKSIKTYREIVEEKERREKELHEAYKNARSPEEAETILRRYTQ
RFTVSEAVLEGLEMPKFLQRSLSVDSDTPLSPTKEASNPMKYLRQQSLPAPKFTATVEAT
ISVVPQPQVSPTQIYPTRTVSTKAVPILSPKPYSQPKNSQPGLRSFTVDGVVRVNGEAFS
GAEDERESTSVKIPSTKSQGIESTARMNTAPVKSHTPQENTEVNTSLAKFHLESRVDACP
VSFDGSPVRSPQQPGPDKSSVNSQKDTCGMDSASERPTSLLTVPCRENLVSEDQGLETES
SQKDEERAVQALETLTRSVESSVVTEQKDDDNENSPREGHMNCQSTVLLKTVQYSPTTKR
PEQKLEDGFDNVASEKRQVSPAEIQTSYLPVKQDSGLSEGNANIPVPPVNLSKRNDYWSW
DPEEERKRQERWQQEQERLLQEKYQREQEKLKQEWERAQKEVEEEERRYHEEERKILEET
VAPLTPRSSMLSSPSRSEQPLLPLDLGGPIVMSLADWERKQELLEKQAQRSKAEASADEK
QSEGTYQQAVPKEQKPTVKTEEQVKVTESSHSQSVCRSETHAQSQKHGQKLLSDNTNPTA
SKLEFIPDASWDNKQPLMKQPEEVWRKTASLDRSWSQTAVTGGMKKSGSYENLGTTPSKS
SSCSPNLQSQSPNRSISGKKLCSSCSHPLGKGAAMIIETLSLYFHIQCFKCGVCKGHLGD
TTTGTDVRIRNGILNCNECYIRFRTAGQPTTL
NT seq
5859 nt
NT seq
+upstream
nt +downstream
nt
atggccagccccgggttagaagcagaaggaaaccagctccagcaccgggacgcgtctcac
gaggctcggaaatggatcgaggcagtcacaggcagatgttttggagagaagggctttcgc
agtggtctagaaaatggaatcctgctatgcgagttgttgaattctataaaacccgggctt
gtgaagaagatcaatagactcccaacccctatagcaggactggacaatatcaccttattc
ctgagaggctgtgaagagcttggcttgaaagacacacaactttttgaccccagtgatctt
caggacacctccatcagggctaacatcaaggggtctgactgctgtcgaaaattgaaaaat
gtgttgatcactatatactggctgggaaaagctaccaatagctgtgcctcgtatagtggg
ccgacgctgaacctgaaggagtttgagggactgctgttgcagatgcgcaaggaggctgaa
gacatggagagccccaaacgcagcattcgtgacagcggctacatagactgctgggactct
gaacgaagcgactcgctctcgccacctcggcacggcagagacgactccttcgacagcctg
gattcgttgggatcacgctcgcagcaaactccctcccccgatgtggtgatccggggcagc
agcgatggtcgcggtagtgactctgaatcagatgtgccacacaggaggatgccggacacg
aggaaagatgacatgttagcccggaggacatcttgcaacgagcccagatcggcaatgccc
ttcaatcagtacctgccaaacaagagcaaccactcggcctatgtccccacacctctacgc
aagaaggcggcagagcgggaggaataccgcaagagctggagcactgccacgtcacccatt
gggggagagcgtcccttcagccaccccgaaacaatcgaagaagaaaactgtgaagatgac
ggcagggcaccatgcaagagacgtgcatggccagaggaggtccccagagcagtgacgtct
cgggtagataatgttcagtttcaagaaattggaagaacccaggcccaaactgatgggcca
aaagagagcctacagcaccagtgggagggaatggatgaggaggaagtgaaaaggctgcag
aggcttgagaaggctgggatcagggtcttgccagcatcggtgcgctacagcagcccaaag
ccagtcattgaagaaagccagtcagcccctctggatataatcctccgtcgagataacgac
tttctaaagcaccagcaggggagagagtctgactcggaggaggaggagcaggagcagaga
ctgccggacatcgagaaggatgacctggcctccaggaaagccagaatgaaccagctcaaa
cccaaagttccacacaaccagtttttaccaatgccgtgctcaaagagtgaggaaaaatgg
gagaacataaagaaagccacccaccgcattacaagcagctcactagataggcaacagcaa
ggagtgaccagtgagagtcaggcccaggtccagtgcccaggccccagtgagatcctcacg
aggagagagaaccccttcctaaagcccgtgcagaatgactctgaggaggaggggcagggg
gggcaggtgacagtccccaatgtgcagagagatgacctggccaaaaggagagctcagagt
ggccctgccccctacagagagacccagccctttgtaaaggcctccattacacagtctgac
ctggagaaatgggagaggctcaagctgtccacagacaccagtgagagtcaggcccaggtc
cagtccccaggccccagtgagatcctcacgaggagagagaaccccttcctaaagcccgtg
cagaatgactctgaggaggaggggcagggggggcaggtgacagtccccaatgtgcagaga
gatgacctggccaaaaggagagctcagagtggccctgccccctacagagagacccagccc
tttgtaaaggcctccattacacagtctgacctggagaaatgggagaggctcaagctgtcc
acagacaccagtgagagtcaggcccaggtccagtccccaggccccagtgagatcctcacg
aggagagagaacctcttcctaaagcctgtgcagaatgactctgaggaggaggggcagggg
gggcaggtgacagtccccaatgtgcagagagatgacctggccaaaagaagagctcagagt
ggccctgccccctacagagagacccagccctttgtaaaggcctccattacacagtctgac
ctggagaaatgggagaggctcaagctgtccacagacaccagtgaggaaacctcaaagccc
ctttgccaggcttgcatggacaagggcctgcctgtaatagaggcagagactgccgctctg
gacgatctagccagccgcagggccagagcaaacagaaaggctctgggcagcaagcaacgt
tttgtacattttggcccggtgacggagatagatcagaaatgctgggagaagctcagcatt
gccagggccgaatcggagagtgagacgtcaggatatggaagccacagtgaagctgaagcc
agcagatgtcttgtttcagctgctagctatagcattcagcacattgaacaggtcgccagt
gagcctaagcagtcattcacagccgagtgttgccccaggagctcttcatttgtacaagcg
gtctgtactccaactcgacaagagtgggcacagcggcctgctgagacccaagaggacagt
gaagaggagggacaggaggagaggcagcccaatcccgagaaagacgacatgctggcacgc
agaactggggccttccagaaaacaaccagcagccccacttttaacaagttccttcctatg
cctgcgtccttgcagccaaagcaagagggccccaaagggactataaaagaagagataata
aagcagagtagctctgccctattgagcccggtggatcagttcagacaagtggcacctgtg
tccacggcaacagtcggtgttactaccaaggagagtcctcgaacaactggaacatttctt
cagttgaggaaacgggagatggcaaatgaagaggaggagcagcaagaggaggaggcggct
gtgaaagagagctttccagatttggaaaaagatgacatgatgtctcgtcatgctctagtc
tcccacagacagacagcaactgctgccagacagttcctcccagtcccagcctctcagcag
actcggacaagtgaggccagtcagttcctcccagtcccagcctatcagcagactcggaca
agtgaggccagcaaagatgatggcaagccacagaggaggccatcttggttagatgatgat
ctcccaccaacctacagccacagagcttctgtatctgatgatgcagaaagtatgagcatg
atcgacatgaggtgtgaggaggaggcgatcctgcagccgcacagcaaggctcgctatgag
catctgcacaatttacacaaccgcctacgagaagaggaggataagtggcaggatgacctt
gcccgctggaagaaccgaaggagaagtgcctctcaagacctgataaagaaagaggaggag
aggaagaaggtggagaggctaatgagtggcgacagggaattgtcagaaaggaggaaaagc
atcaagacctacagggagattgtcgaggaaaaggaacgcagagagaaggagcttcacgag
gcctacaaaaacgcgaggagtcccgaggaagccgagaccatcctgcgacgctacactcag
cgctttacagtcagtgaggccgtcctggaggggctggagatgccaaagttccttcagagg
agtctgtctgtggactcggacacccctttgtcccccacaaaggaggcctccaaccccatg
aagtacctgcggcaacagtccctgccagcccccaagttcacagcgaccgtggaggccacc
atctcagtggtgcctcagcctcaagtcagccccacacagatctatcccactcgaactgtt
tcaaccaaggcagtgcctatcctgagccccaagccttattctcagcccaagaactcccag
ccaggactgcggtcattcacagtggatggggtggttagagtgaatggagaggcattcagc
ggagcagaggatgaaagggaaagtacgtcggtaaagattccctccaccaaatcacagggg
attgaaagtacagccaggatgaatacagccccagtgaaatcacatacgcctcaagagaat
accgaggttaatacatcactggcaaagttccatttggagagcagggtcgatgcctgtcca
gtcagtttcgatggctctccagtcagatcgccacagcaacccgggccggataaatcctca
gtaaattcacagaaagatacctgtggaatggactctgcatcagaaaggccaacatcactt
ctaactgttccgtgcagagagaaccttgtgtctgaagatcaagggttggagaccgagtcg
tcacaaaaagatgaggagcgtgctgttcaggccttagaaactctgaccaggtctgttgag
agcagtgtggtgactgaacagaaggatgatgataatgagaactctcctagagaaggacac
atgaactgtcagagcactgttctactgaagacagtacagtactcaccgacaacaaagaga
ccagaacagaaactagaagatggttttgacaatgtagcatcagagaagaggcaagtgagc
cctgctgaaatccagacttcatacctgccagttaaacaagattctggcctgagtgaggga
aatgcaaatatcccagtccctccagtcaatctgtccaaacgcaatgactactggtcgtgg
gacccagaggaggagcgcaagcgtcaggagagatggcaacaagagcaggaacgcttgctt
caggagaagtaccagcgtgagcaggagaagctgaagcaggagtgggagagagcccagaaa
gaagtggaggaggaggagcgcaggtaccatgaagaggaacgtaagattcttgaggagacg
gtggcccctttgacaccccgttcatccatgctgtcctcccccagccgcagtgagcaacct
cttctcccgctggacctcgggggccccattgtgatgtcgctggcagactgggaacgcaag
caggagctcctggagaaacaggcgcagaggtctaaggcagaagctagtgcagatgaaaag
caaagtgaaggcacttatcagcaggctgtccctaaggaacagaagcccactgtgaagaca
gaagaacaagtgaaagtgacagaaagttcacactcccagagtgtctgccgctcagaaaca
catgcccagagccagaaacacggtcaaaagcttctttcagacaacactaatccgacagca
tccaaacttgagttcattccggatgcatcatgggacaacaagcagccccttatgaagcag
ccagaggaggtctggagaaagacggcctctctggatagaagctggagtcagaccgctgtc
acaggaggaatgaaaaagtctgggtcctatgaaaatttaggaacaaccccatctaagtca
tcttcatgttcacctaatcttcaatcccagtcacccaacaggtctatcagtggaaagaag
ctgtgctccagttgttcccacccccttggaaaaggcgctgccatgatcattgagacactc
agcctctactttcacatccagtgcttcaagtgtggggtctgcaagggacatctaggtgat
acaaccacagggacggatgtcaggattcgcaatggtattctcaactgtaacgagtgttac
atcagattccgaactgctgggcagcccacaacattgtga
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