Polyodon spathula (Mississippi paddlefish): 121329555
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Entry
121329555 CDS
T07273
Name
(RefSeq) alpha-actinin-1
KO
K05699
actinin alpha 1/4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04517
IgSF CAM signaling
pspa04518
Integrin signaling
pspa04519
Cadherin signaling
pspa04520
Adherens junction
pspa04530
Tight junction
pspa04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121329555
04518 Integrin signaling
121329555
04519 Cadherin signaling
121329555
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121329555
04520 Adherens junction
121329555
04530 Tight junction
121329555
09142 Cell motility
04810 Regulation of actin cytoskeleton
121329555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121329555
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121329555
04147 Exosome [BR:
pspa04147
]
121329555
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121329555
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121329555
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121329555
Exosomal proteins of colorectal cancer cells
121329555
Exosomal proteins of bladder cancer cells
121329555
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
XisI
EF-hand_5
Uds1
Motif
Other DBs
NCBI-GeneID:
121329555
NCBI-ProteinID:
XP_041131122
LinkDB
All DBs
Position
17:complement(16995252..17086164)
Genome browser
AA seq
891 aa
AA seq
DB search
MEQYDSEDGVYMQQQDDWDRDMLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRD
GLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDYIASKGVRLVSIGAEEIVDGNAK
MTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCA
LIHRHRPELLDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTY
VSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEHYEKLASDLLEWIRRTVPWLENRA
PENTMQAMQQKLEDFRDYRRMHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGRMV
SDINNAWGGLEHAEKGYEEWLLNEIRRLERLDHLAEKFRQKAAIHEAWTAGKEEMLQEKD
FETASLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPGVNARCQGICD
QWDSLGALTQKRSEALERTEKLLETIDQLYLEFAKRAAPFNNWMEGAMEDLQDTFIVHTI
EEIQGLSTAHEQFKATLPEADKERQAILGIHNEITKIVQTYHVNRVGTNPYTTINPQEIN
SKWDKVRQLVPQRDQALMEEHTRQQNNERLRKQFAGQANIIGPWIQTIYQEIGRISIEMH
GTLEDQLTHLRQYEKSIVNYKPKIEQLEVDHQLIQEELIFDNKHTNYTMEHIRVGWEQLL
TTIARTINEIENQVLTRDAKGISQDQMNEFRASFNHFDRDHSGKMGAEEFKACLISLGFD
IANDAQGETEFSRIMSIVDPNRLGVVTFQAFIDFMSRETADTDTADQVTASFKVLAGDKN
YILADELRRELPPNQAEYCIARMAPYCGPDAVPGALDYMSFSTALYGESDL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggagcaatatgacagcgaggacggcgtgtacatgcaacagcaggacgattgggatagg
gatatgctcttggatcctgcatgggagaaacagcagaggaagacattcacagcctggtgt
aactctcacctgaggaaagctgggactcagatcgagaatattgaggaggacttcagggat
ggcctcaaactcatgcttctgctggaggtcatatcaggcgagcgcctggccaagccagag
cgagggaagatgcgggttcacaagatctccaatgtgaacaaggccctggactacatcgcc
agtaaaggggtgaggctggtgtccatcggggctgaagagatcgtggatggcaatgcgaag
atgaccctgggaatgatctggaccatcatcctccgcttcgctattcaggatatctctgtc
gaggagacctcagccaaagaaggcctgctgctgtggtgccagcgaaagacagcaccctac
aagaatgtcaacatacagaacttccatataagctggaaggatggactgggattctgcgct
ctcattcacagacaccgcccagaactcctagactatggcaaactgcgcaaggatgacccc
ttgaccaacttgaacacagccttcgatgttgctgagaagtacctggacattcctaagatg
ttggacgctgaggacatcgttggcacggcccgcccagatgagaaggccatcatgacctac
gtctccagcttctaccacgccttctctggtgcccagaaggcagagacggcagctaatcgg
atctgcaaggtgctggctgtcaaccaggagaacgagcagcttatggagcactatgagaag
ctggccagtgatctgctggagtggatccgccgcactgttccctggctggagaaccgcgcc
ccggagaacaccatgcaggccatgcagcagaaactagaggacttccgagactaccggcgc
atgcacaagccccccaaggtgcaggagaagtgccagctggagatcaacttcaacaccctg
cagaccaagctgaggctgagcaaccggcccgccttcatgccctctgaggggagaatggtc
tcggacatcaacaatgcgtggggagggctggagcatgcggagaagggctacgaggagtgg
cttctgaacgagatccgcagactcgagagacttgaccacctggctgagaaattcagacag
aaagctgccatccacgaggcctggactgcgggcaaggaggagatgctgcaagagaaggac
tttgagactgcttccctgtcagagatcaaagccctgctgaagaaacacgaggccttcgag
agcgacctggcagcgcaccaggacagagtggagcagattgcagccatcgcccaggagctc
aatgagctggattactatgactcccctggtgtgaacgcacggtgccagggcatctgtgac
cagtgggactccctgggagcgttaacacagaaacgcagtgaggccctggagagaacagag
aagctgcttgagaccatagaccagctgtacctggagttcgccaagagggcagcgcccttc
aacaactggatggagggggcgatggaggacctgcaggacaccttcattgtccacaccatt
gaggagatccaggggctgagcacagctcacgagcagttcaaggccaccctccccgaggca
gacaaggagcgacaagccatcctgggcatccacaacgagatcaccaagattgtgcaaacc
taccacgtgaacagggtcggcaccaacccctacaccaccatcaacccccaggagatcaac
agcaagtgggacaaggtcaggcagctggtaccccagagagaccaggccctgatggaggag
cataccaggcagcagaacaacgagcgcctccggaaacagtttgcaggccaggccaacatc
atcggaccttggatacagaccatctaccaggaaattggccgcatttccattgagatgcat
ggcaccctggaggaccagctgactcacctgcgacagtacgagaagagcatcgtcaactac
aagccaaagattgagcagctggaggtggaccaccagcttatccaggaggagctcatcttc
gacaacaagcacaccaactacaccatggagcacatccgtgtgggctgggagcagctcctc
accaccatcgccaggaccatcaacgagattgagaaccaggtcctgaccagagacgccaag
ggcatcagccaggaccagatgaacgagttccgagcctctttcaatcacttcgacagggat
cattccgggaagatgggggctgaagagttcaaagcctgcctcatcagcctgggcttcgat
atcgccaacgacgcacagggagagactgagttttcacgcatcatgagcatcgtggacccg
aaccggcttggcgtggtcacattccaggccttcatcgacttcatgtcccgggagacagct
gacaccgatacagcagaccaggtcacggcctcctttaaagtgctggcgggagacaagaac
tacatcctggctgacgagcttcgtcgtgagctgcctccgaaccaggctgagtactgcatc
gcccgcatggctccgtactgtggtcctgacgctgtgcccggagccctggactacatgtcc
ttctccactgcactatacggagaaagtgacctttaa
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integrated database retrieval system
