Polyodon spathula (Mississippi paddlefish): 121329727
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Entry
121329727 CDS
T07273
Name
(RefSeq) probable E3 ubiquitin-protein ligase IRF2BPL
KO
K22383
interferon regulatory factor 2-binding protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121329727
04121 Ubiquitin system [BR:
pspa04121
]
121329727
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
121329727
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Atypical E3
121329727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-2BP1_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
121329727
NCBI-ProteinID:
XP_041131375
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All DBs
Position
17:28855855..28858970
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AA seq
665 aa
AA seq
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MSSAQVSSSRRQSCYLCDLPRMPWAMIWDFTEPVCRGCVNYEGADRIEFVIETARQLKRG
HGFQDGRSPGPPPPPTVKAQASLPAKETVQLNHVDGSSKAPQPGLDRYSLNTERPRFEYP
GMGVHAGRLPNGLSGPNGFPKPDDGPPELNRQSPNSRRNHGMVPVPGQMNVPPNLLPQTM
LNGPATAVAIPPHGLSSRPPPPTSLGASLSMATQSMSDAGKRPGSVSSTDQERDLKEKQR
NAEALSELSESLRNRAEDWTNKPKIVRETLITLSNSTPFDVRFKKDHSLVGRVFAFDAVS
KPGMEYELKIFVEYPSGAGNVFSSASGVAKQMYQDCMKDFGRGLSSGFKYLEYEKKHGSG
DWRLLGDLLPESVRFFKEMVGSEMLPQPYIDASCPLLPTALVNVPRALPTANAPRTGIRK
RKASPEPDSAEGPLKLSEEQQRQQWMASQSEALKLTMAYGSNHGGHPPLVPGHPTHSNRT
TPPETAPQNGQSPMAALMSVADTLGNAHSPKDGSSVHSTTSTRHNNNSPVSPPSITGQRR
LASRNGEMNLPVAPPPTSAHTGMDQVHPQNIPDSPIANNGPLCCTICHERLEDTHFVQCP
SVPNHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATILAGDVKVK
KERDP
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcacaagtgtcttcttcgaggagacagtcgtgctacctctgcgatttgcct
cgcatgccatgggcaatgatttgggattttaccgaaccagtttgcagaggctgcgtaaat
tatgaaggcgcagatcggatcgagtttgtgattgagactgcccgccagctgaagcgaggt
catggtttccaagatgggagatcacctggaccaccacccccaccaacagtaaaagcccaa
gcaagtttaccagcaaaagaaaccgtgcagctgaatcatgtggacgggtcatcgaaagcg
ccacaaccgggattggatcgctactcgctgaacacagaacgaccccgatttgagtacccg
ggcatgggcgtccacgctggcaggcttcctaatggcctgagcggtccaaatggatttcct
aaacctgacgatggaccccctgaactgaacagacagagccccaactcacgtagaaatcac
ggaatggttccggtccctggccagatgaatgtgcctcctaatcttttaccccagacaatg
ctgaatggcccggctactgcagtagcgatccctccgcatggtctcagcagccgaccccct
cctccaacaagcttgggagcttctttatccatggcgacacagtcgatgtctgacgcaggg
aaaagaccgggttcagtgtccagcactgaccaggagagggatttgaaagaaaaacagcgc
aatgcagaagctttgtctgagctcagtgaaagtttaaggaacagagctgaagattggaca
aacaaacctaaaattgtgagagagactctaattacactttccaacagcactccatttgat
gtcaggtttaaaaaggaccactctttagtgggcagggtgtttgcttttgatgccgtctcc
aaaccggggatggaatacgagctgaaaatattcgtagagtaccccagtggagccggcaac
gtgttctccagcgcatccggggtggccaagcaaatgtatcaggactgcatgaaagatttt
ggtagggggctttcctctggcttcaagtatttggaatatgaaaagaagcacggctcgggt
gactggcggcttcttggtgatttgcttccagaatcggtacgtttctttaaagaaatggta
ggttcagagatgctgccacagccttacatcgatgccagctgccctttgttacccactgct
ttggttaacgtccctcgtgccttgccaacagcaaacgccccaaggactggtattcgtaaa
aggaaagcttctccggagcccgactcggcagagggacctttaaaattgtccgaggagcag
cagaggcagcagtggatggcaagccaaagtgaagcactgaaactcaccatggcttatgga
tcgaaccatgggggacacccacctcttgtacccggtcaccccacacactccaacaggaca
accccacctgaaaccgcaccccagaacggacagtcccctatggctgcgctcatgtcggtt
gcagacaccttgggcaatgcccattcccccaaagatggaagctcagtgcattctaccacc
tctacaaggcataacaacaacagccccgtctccccaccttccataaccggacagcgtcgc
ttggcgtcccgcaatggagaaatgaatcttcccgtggcacccccacctactagtgcccac
actggcatggaccaagttcaccctcaaaacattccagattccccaattgccaataacgga
cccctgtgctgcaccatttgtcatgaacgtttggaggacacacactttgtacagtgcccg
tcagtgcccaaccacaaattctgtttcccttgttctagagagagcatcaaagcgcaaggg
gcaactggtgaggtgtattgccctagcggagagaaatgtccactggttggttcaaacgtg
ccttgggcatttatgcaaggtgagatagctacaattttagctggggacgttaaagtgaaa
aaagagagagacccttaa
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