Polyodon spathula (Mississippi paddlefish): 121329838
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Entry
121329838 CDS
T07273
Name
(RefSeq) low-density lipoprotein receptor-related protein 5-like
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04150
mTOR signaling pathway
pspa04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121329838
04150 mTOR signaling pathway
121329838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121329838
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121329838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
DUF5050
EGF_LRP2
SGL
cEGF
EGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
121329838
NCBI-ProteinID:
XP_041131662
LinkDB
All DBs
Position
17:complement(7995595..8056885)
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AA seq
1609 aa
AA seq
DB search
MSLQGLAMETLFIGLLLYSYFLLVGASPLLLFANRRDVRLVDAGSGKPESVVVVSGLEDA
AAVDFVYSEGLIYWTDVSEEAIKQTLFNQSGNVQTVIVSGLDSPDGLACDWLGKKLYWTD
SETNRIEVANLNGTSRKVLFWQALDQPRAIALDPAHGYIYWTDWGEEPRIERAGMDGSTR
KIIVDSDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGTFRQTVVEGTLTHPFALTLS
GETLYWTDWQTRSIHACDKKTGEKKKEILNSIYSPMDIQVLGQERQPDIRTPCDENNGGC
THLCLLSPREPFYSCACPTGVQLQEDGRTCKPGAEEVLLLARRTDLRRVSLDLPDFTDIV
LQVDDIRHAIAIDYDPVEGYVYWTDDEVKAIRRSLIDGTGAETLLTTEVNHPDGIAVDWV
ARNLYWTDTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPICGYMYWTDWGEKPKIER
ASLDGSDRLVLLNNSLGWPNGLAIDYAEGKLYWGDAKTDKIEVINIDGTDRKTLLEDKLP
HIFGFTLLGDYIYWTDWQRRSIERVHKTKGIREIIIDQLPDLMGLKATRVTKAFGTNPCA
DNNGDCSHLCFFRPQGPQCACPMGLELLGDMKTCIVPEAFLLFTSRADIRRISLGTHNND
VAIPLPGVKEASALDFEVSDNRIYWTDVSLKTISRAFMNGSSVEHVIEFGLDYPEGMAVD
WMGKNLYWADTGTNRIELARLDGQYRQVLVWKDLDNPRSLALDPANGFMYWTEWGGKPRI
VRAHMDGANSVTLVDKVGRANGLTIDYTDQRLYWTDLDTCMIESSNMLGLEREVIADDLP
HPFGLTQYRDYIYWTDWNLRSIERADKTNGQNRTIIQGHLDYVMDILVFHSSRQDGSNEC
VQNNGQCAQLCLAVPEGYKCGCASHYTLDGNGRNCSSPSSFLLFSQKSAISRMVLDEQSP
DIILPIHGLRNVRAISYDPLDNVIYWVDGRQNIVKRARDDGSQPFVVVSATNHIQNPEKQ
PHDLSIDIFSRTVYWTCEATNTINMNRLDGKGIGVVLRGEHDRPRALAMNAERGYMYFTN
MQERSAKIERASLDGTEREVLFTTGLVRPVALAIDNKLGKLFWVDADLKRIESSDLSGAN
RITLQDSNILQPTGLTVLGEHLYWIDRQQQMIERVDKISGDKRTRIQGRIVHLTGIHAVE
DIDTDEFSAHPCSRDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEPPTCSPDQFA
CSTGEIDCIPMAWRCDGFLECDDHSDEENCPLCSANQFQCEKGQCIESRLRCNGEIDCQD
KSDEQDCDMICRPNQFRCGTSQCILVKQQCDSFPDCSDGSDEMLCELNTETELQTHSSAI
GPVIGIILSLFVMGAMYFVCQRVVCRRYKGPNGPFPHEYISGTPHVPLNFIAPGSSQHGT
FTGISCGKSMMSSMSLMGSSGSGAPLYDRNHVTGASSSSSSSTKGTFYPQILNPPPSPAT
DRSLYNTEMFYSSNSPSTTRSYRPYLMRGIAPPTTPCSTDMCDSDYTTSRWKTNKYYIDL
NSDSDPYPPPPTPRSQYMSAEESCPPSPSTERSYFHLCPPPPSPCTDSS
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctacaaggacttgcaatggagactttgttcatcgggttactgctttacagttat
ttccttctggttggtgcgtctcctctcctgctctttgcaaacagacgggatgtccggctg
gtggatgcagggtctgggaaaccagagtctgtcgtggtggtcagtggtcttgaggacgca
gcagcagtggactttgtctactcagaggggctgatctactggactgacgtgagtgaagag
gccatcaagcaaacccttttcaatcaatctgggaatgtgcaaacggttatcgtttcgggc
ctggattctcctgatggcctggcttgtgactggctgggaaaaaagctgtactggacagat
tccgaaaccaacaggattgaggtggccaatctgaatggaacgtcgaggaaagtcctgttc
tggcaagcccttgaccagccaagagcaatcgctttggatccagcacacgggtacatatac
tggacagactggggggaggagccccgcattgagagagctgggatggacggcagcaccagg
aaaatcattgtggactctgacatttactggcccaatggtctgacgatagacctggatgaa
cagaaactttactgggcagacgcaaagctgagttttatccacagagcaaacctggatggc
acctttcggcaaactgttgttgaaggcacgttgacgcacccgttcgcactgacgctatcc
ggggaaactctgtactggacagactggcagacccgctcgatacacgcctgtgacaagaaa
acaggggagaagaagaaggaaattctcaatagcatttattctccgatggacatccaggtc
ctgggccaggagagacagcccgacattcgaaccccctgtgatgaaaacaacggaggctgc
acccacttgtgcctcctgtccccaagagagcctttttacagctgtgcttgtcctactggt
gtccagcttcaagaagatggcaggacctgcaaaccaggcgctgaagaagtattattacta
gctagaagaacagacttgcgacgtgtctctcttgatttgcctgacttcacagacattgtg
ctgcaggttgatgacattcggcatgccatcgcaattgactatgatccagtggagggttat
gtgtactggaccgacgacgaggtcaaagcgatccgcagatcgctcattgacggcactggg
gccgagacgctgctcaccactgaagtgaaccaccctgatgggatagcagtggactgggta
gcccgaaacctttactggaccgacaccgggaccgatcgcatcgaggtgacgaggctaaat
ggcacatccaggagaatcctcatatcggaaaatttagacgagccaagagccatcgtactg
gatcctatctgtggatacatgtattggaccgactggggtgaaaaaccaaagatcgagcgt
gccagcttggacggcagtgaccgccttgtccttctgaataactctttgggttggccaaat
gggttagcaatagactatgcagagggaaagctgtactggggagatgccaaaacagacaaa
atcgaggtgataaatattgatggcactgaccggaagacacttttagaagataaactgcct
catatatttgggtttacattgctgggggattatatctactggactgactggcagagaagg
agcattgaacgtgtccacaagaccaaaggcataagagagatcatcatagaccagctgcca
gatcttatgggcctcaaagcaacacgggtgactaaagcatttggaactaacccttgtgcg
gacaacaatggagattgcagccacctgtgtttcttcaggccacagggtccacagtgtgcc
tgtccaatgggtctggagcttctgggtgacatgaagacctgcattgtgcctgaagccttc
ctgctgttcaccagcagagctgacattcggaggatatctctgggaacacacaacaacgac
gttgccattcctctccctggagtcaaagaggcttctgctctggatttcgaagtgtctgat
aataggatctattggactgatgtcagtttgaagactataagccgtgctttcatgaacggc
agctctgttgagcacgtgattgagtttggactggactaccctgagggtatggcggtggat
tggatgggaaagaacctttactgggccgacacaggcactaaccggatcgagttagcccgt
ctagacggacagtaccgccaggtcctcgtgtggaaagacttggacaaccctcgatctctg
gcgcttgacccagctaacgggttcatgtactggactgagtggggaggtaaacccaggata
gtgagagcgcacatggatggagccaacagcgtcacgctagttgataaagtgggacgagcc
aacgggcttactattgactacacagaccagaggctgtattggacagacttggacacatgc
atgattgagtcctccaacatgctagggctggaaagggaagttattgcagatgatctcccc
cacccttttgggctcacccaataccgggactatatctattggaccgactggaacctgcgc
agcatcgaacgagctgacaagaccaacgggcagaaccgcacgataatccaggggcatctg
gactacgttatggatattttagtgttccactcctcccgccaggacggctccaacgaatgt
gtgcagaataatgggcagtgcgcccagctttgtctggcggtacctgagggatacaagtgt
ggatgtgcatcacattacactcttgacggcaacggcaggaattgtagctccccttccagc
ttcctcctgttcagtcagaaatcggcgatcagtcgcatggtgttggacgagcagagccca
gacatcatcctccctatccacggactgcgcaacgtccgggccatcagctacgaccctctt
gacaacgttatttactgggtggacgggcggcagaacattgtcaagagagcaagggatgat
gggtcacagccatttgtagtggtctctgctaccaaccatattcagaacccggagaagcag
ccccacgatctgagcattgacattttcagtcggactgtctactggacatgtgaagccacc
aacaccatcaacatgaacagactggatgggaaaggcataggagtggtgttgcgtggagag
cacgatcgaccaagagcccttgcgatgaatgcggaaagagggtacatgtacttcacaaac
atgcaagagaggtctgctaaaatagagcgcgcttccctggatgggactgagcgggaggtg
ctgttcactacaggactcgttcgacctgtcgctctggcaatcgacaacaagctggggaag
ctcttctgggtggatgccgatctcaaacgcatcgagagcagtgacttgtctggagcaaat
agaattactctgcaggattccaatatcctccagcccacagggctgacagtgctgggagag
cacctgtactggatagacaggcagcagcagatgattgagcgtgtggacaaaatcagtggg
gacaagaggaccaggatccaggggaggatagtgcatctcactgggatccacgcagtggaa
gacattgacacagacgagttctctgcacacccatgttcccgtgacaacggaggctgctca
cacatctgcattgcgaagggtgacggaaccccccgctgctcctgcccagtccacctggta
ctgctgcagaacctgctcacctgtggagaacccccgacgtgttcccctgatcagtttgcc
tgctccactggggagatcgactgtatccccatggcctggcgctgcgacggctttcttgag
tgtgatgaccacagcgacgaggagaactgcccgctgtgctccgccaaccagttccagtgt
gagaagggacaatgcatagagtctcggctgcgctgcaacggggagatcgactgccaggat
aagtccgatgagcaggactgtgacatgatctgccgtccgaaccagtttcgctgcggcacc
agccagtgcatcctggtgaaacagcagtgcgattccttcccagactgtagcgacggatca
gacgagatgctttgcgagttgaacacagagactgaactccagactcacagcagtgccatt
gggcctgtcattgggatcatactgtcgctgttcgtcatgggagccatgtatttcgtgtgc
cagcgagtggtgtgtcgtcgctataaaggacccaatggaccatttcctcatgaatatatc
agcgggactcctcacgtccctcttaatttcatagccccaggaagctcccagcatggcact
ttcactgggatctcgtgtgggaagtccatgatgagttccatgagtctgatggggagcagt
ggcagcggcgcccctctgtatgacaggaaccatgtgactggagcatcatctagcagctct
tccagtactaaaggaaccttctacccacagattttgaacccacctccatctccagctacc
gatcgttctctgtacaatactgaaatgttttattcctccaatagtccttcaactaccaga
tcatacaggccctatctaatgcgaggcattgcgccccccaccacaccctgcagcactgac
atgtgtgacagcgactacaccaccagtcgatggaagacaaacaagtactacattgatctg
aactcggactcggacccctaccctccgccccccacccctcggagccagtacatgtctgcg
gaggagagctgccccccctctccctccacagagcgcagctacttccacctgtgcccccca
ccaccctccccttgtacagactcctcatga
DBGET
integrated database retrieval system
