Polyodon spathula (Mississippi paddlefish): 121329948
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Entry
121329948 CDS
T07273
Name
(RefSeq) DNA mismatch repair protein Mlh3-like
KO
K08739
DNA mismatch repair protein MLH3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121329948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121329948
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
121329948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
121329948
NCBI-ProteinID:
XP_041131990
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Position
17:32166213..32173478
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AA seq
1357 aa
AA seq
DB search
MIKCLSKEVQAKLRSGIAILSLSQCVEELLLNSIDAAATCVAVRVDIEACRIQVLDSGFG
MDREDMESVGNRYFTSKCSTVEDLENLRFYGFRGEAIASIANVAKLVEISSRTSKSAKTF
GKVFKDGKPLDVYEAETTRPSSGTTVVICSLFYNLPVRRKSMNSILECERIRQRIEAISL
MHPSVSFTLKNDSTGSMVVQLSKSKSSYYRFTQIYGLGKSQKLREISYSYKQFEMSGYIS
CEGHYNSSMQFLYVNSRLVLKTKLHKLINFLLKKVSVVCKQKDSSKMITAPASPSRHRTS
SELQGVYVINIKCHYSEYDVCIEPAKTLIEFRDWDGVLVCVQEGVKKFLTRENLVAEISS
DDIKEFIEEGNITMQATSANSNACEENGIVGNCKSACEKIIEPYNIKTLRSKAVHRPLVF
DSEVTGSSGSENVSSTNGLKENIPLLQDRTISRSAVTDDNSSSASNVQSLEKEIITNELA
KVSEIPGLCETSDIKNNRFEECSSVTKLKTILCIESSEDNTTVKQFESQDSILMDNNKET
EENIDLDPALHVEDTTACKQSEVIQLEKHNSAPQTDKAINTESVRPKLGTTGFIRHVIPK
PERNENDKKNHEGLVRFCHHGPVSAQDIVKEKQHNLEQNTCLPKQQCCTLTMQHAKQSSS
EDWRTLFSSRGDAFRNCVDSNKQSDESNRKITLSNSLKTVEDFKGSMDTTVGLSTGSKTK
QPSKLCLPIRIGSLDRFRRTYGRTCPSAVQYSCQDSNNNLSTAAANNPAEAKRGASTSSE
EGSCSRFNNSSKNWERNDYTTEENAITLSNYTQIKKASLNTSKPHRSLATKLSKLKGYRK
NDAKVQPGGGISINGAQKNSADLRLTHSNNSNAETPPQMSPNKKTQVTNNCLKGCESGEN
NSEQNATGTVDFDGNQKEGTVISATYLHPDSGYKGSTLSSPSQSDDAAQCHYCKEISSEA
TFSSPEKAKECSDFATCKARFEDASKKKEIPSTTQSSSDWLEHFDVSVGRMAYINTVTGL
SKYVAPPEEETQAICSTDLTTMAVNVVSEKDDSEAAEFVRTLFSEWENPVFVRHPEVALD
VSSGQAEGLAVKIHNILYPYRFTKEMINSMEVVQQVDNKFIACLINTRSQEDTNKEGNLL
VLVDQHAAHERVRLEKLVTDSYETHSEASGPKRLCSSTVCPPLEIDMTEEELRLLRSCQT
FLKELALEMSFAEREDSKVLVGKVPVCFIEREASELRRGRQTVTKAIVEEYLREQIELIQ
STGRVQGTLPLTVLKVLASQACHGAIKFNDSLSMEECCRLIESLSVCQLPFQCAHGRPSM
LPLVDLDHLEMEKQDPPKPNLMKLRKLRRAWELYGKQ
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgataaagtgcttatcaaaggaagtgcaggcaaaactccgctctggcattgccatcctc
tcattgagccagtgtgtagaggagcttctgttgaacagcatcgatgctgctgcgacttgc
gtggctgtcagggtggatatcgaggcctgcagaatccaagttttggacagtgggttcggt
atggacagggaggacatggagagtgtgggaaaccggtattttacaagcaagtgcagtact
gtggaagatctggaaaacctgaggttttatggtttcagaggggaggctattgcaagcata
gctaatgtggccaagctagtggaaatttcatccagaaccagcaagtctgctaaaaccttt
ggtaaagtattcaaggatggcaagccgttggatgtctatgaagctgaaaccaccagacca
agctcaggcacgacagttgtgatctgcagtttgttttataacctgccggtacggagaaaa
agcatgaattcgattctggaatgtgaacggataaggcagaggatagaagcaatctctctt
atgcatccctctgtttcattcacattgaaaaatgattccactggatcaatggtagtccag
ctgtctaagtcaaaaagcagttattacaggtttacccaaatatatggactgggaaaatct
caaaaacttagagagatcagctattcctacaagcagtttgaaatgagtgggtatatcagt
tgtgagggtcactataacagcagcatgcagtttttatatgtaaacagtcgactggtttta
aaaacaaagctccataaattaataaatttcttattgaagaaagtgagtgttgtctgcaag
cagaaagacagctcaaaaatgatcactgctcctgcaagtccttctaggcacaggactagt
tcagagttgcagggggtgtatgttattaatattaaatgccattactcagagtatgatgta
tgcattgaacctgcaaaaaccttaattgagtttagagactgggatggtgtgttagtctgt
gtccaggaaggagtcaagaaattcctgaccagggagaatttggtggcggagatatcaagt
gatgacataaaggagtttatagaggaagggaacattacaatgcaagccaccagcgctaat
agcaatgcttgcgaggaaaacggcatagtgggaaattgtaagtctgcatgtgagaaaatt
atagaaccatacaatataaaaacactgcgatctaaagctgttcataggccactagtattt
gattctgaagttactggaagttccggtagtgaaaatgtgtccagtactaatggcttaaag
gaaaatattcctttacttcaggatagaacaatctccaggtctgctgtcacagatgacaac
agctcatctgcctcaaatgtgcaaagtttagaaaaagagatcattacaaatgagcttgct
aaagtgtcagaaatcccaggactttgtgaaacgtcagatatcaagaataaccgttttgaa
gagtgcagtagtgtaaccaaattgaaaacgattctgtgtatagaaagctctgaagataac
actacagtgaaacagtttgaaagccaggatagtatactgatggacaataacaaagaaact
gaggaaaacatagacctcgatcctgcccttcatgtagaggataccacagcctgcaaacag
agtgaggtaatacaacttgagaagcacaactcggctccgcaaacagacaaagcaattaac
acagaatcagtgaggccaaaactgggtacaacggggttcatacgtcatgtgataccaaaa
ccagaaaggaatgaaaatgacaagaaaaaccatgaggggctggtgaggttttgtcaccat
ggtcctgttagtgcccaggatatagtcaaagaaaaacagcacaatctggaacaaaataca
tgcttgcctaagcagcaatgttgtacattaactatgcagcatgcaaagcaatctagcagt
gaagactggaggacacttttcagttccagaggagatgcatttagaaactgtgtagatagt
aataaacaatcagatgagtcaaaccggaagattacattatctaacagtttaaaaacagtg
gaggatttcaaaggttctatggacacaacggttgggttatcaacaggatccaaaaccaaa
caacctagtaaactgtgcctgcctataagaataggatccttggataggtttagaaggaca
tatggaagaacctgtccttctgcagttcaatactcctgtcaagatagtaacaacaattta
agtacagcagctgccaataatcctgctgaagcaaagcgaggtgcctccactagtagtgaa
gagggcagctgtagtagatttaataactcttcaaagaactgggaaaggaatgattacact
acagaagagaatgccattactctttccaattacacgcaaataaagaaagcatcactaaat
accagcaagccacacaggtcccttgctacaaaactgtcgaagttgaagggttatcgtaag
aacgatgcaaaggtgcagcctgggggaggcattagtatcaatggtgcccaaaagaatagt
gcagatctccggcttacgcatagtaataacagcaatgcagaaacaccgccccaaatgtca
cccaataaaaaaacccaagtaactaataattgtttgaagggatgtgagagtggagagaat
aacagtgaacaaaatgccacaggaactgtagattttgatggcaaccaaaaagaaggcact
gtaataagtgcaacatatttgcatcctgatagtgggtacaaaggatctacattgagttct
cccagccagtcagatgacgcagctcagtgtcattattgcaaagagatttcttctgaagct
actttcagcagtccagaaaaagcgaaagaatgcagtgattttgccacttgtaaggccagg
tttgaggatgcgtcgaaaaagaaggaaatcccaagtaccacacagagttcctctgattgg
ctagagcactttgatgtgtctgtgggaaggatggcttacataaacacagtgacaggactc
agcaaatatgtggctcccccagaagaagagacccaagcgatctgtagcacagacctaaca
acaatggcggtgaacgtcgtctctgaaaaagatgattctgaagccgctgagtttgttcgt
actctgttttctgagtgggagaacccagtgtttgttcgacatcctgaggttgctctcgat
gtgagcagtgggcaggctgaaggtttggctgtgaagatccacaacattctctatccctat
cgcttcaccaaggaaatgatcaattccatggaggttgttcagcaagtggataataaattc
attgcctgtctgattaacacaagatctcaagaggacacaaacaaagagggcaacctcctg
gtcttggtggatcagcatgcagctcacgaaagagtcagacttgaaaagcttgtaacagat
tcatacgaaacccactctgaagcgtcaggaccgaagaggctgtgttcctccacggtgtgt
cctccactggagattgacatgactgaggaggagctgagactgttgcgttcatgccagact
ttcctgaaagagctggcactggagatgtcgtttgctgaaagggaggactcaaaggtttta
gttgggaaagtgcctgtgtgttttatagagagagaagccagcgagcttcgccggggcaga
cagactgtcactaaagccattgttgaggaatatttacgagaacagatagagttaatccaa
tcgacaggccgggtgcaagggaccctgcccctgacagtcctcaaagtcctagcttcccaa
gcctgccatggagctatcaagtttaatgacagcctgagtatggaagagtgctgcagatta
attgagtccctttcggtgtgtcagctgcctttccagtgtgctcatggtagaccatcaatg
cttcctctggtagacctggatcacttagaaatggaaaagcaggaccccccaaaaccaaat
ctaatgaaactgaggaagctacgtcgagcatgggaactgtatggaaagcagtaa
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