Polyodon spathula (Mississippi paddlefish): 121329998
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Entry
121329998 CDS
T07273
Name
(RefSeq) RNA helicase aquarius-like
KO
K12874
intron-binding protein aquarius
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121329998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121329998
Spliceosome [BR:
pspa03041
]
Complex B
Other components
Prp19-related factors
121329998
Complex C
121329998
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
ResIII
AAA_30
UvrD-helicase
DEAD
UvrD_C_2
SLFN-g3_helicase
AAA
Parvo_NS1
AAA_16
AAA_22
PhoH
DnaB_C
nSTAND3
NB-ARC
ATPase
Motif
Other DBs
NCBI-GeneID:
121329998
NCBI-ProteinID:
XP_041132115
LinkDB
All DBs
Position
17:27083890..27123673
Genome browser
AA seq
1464 aa
AA seq
DB search
MEKTVQVKKSYAPSVSQINAEFVTQLANKYWAPHVKKKLPFDPKVVEDVYQKEILKSKFA
IRKIMLLEFSQYLENYLWVNYSPEVSSNAYLMTICCIVNEKFRENVPAWETFKKKPEHFT
YFFKCILEASLADGDDELSLREQTVQLLFLDHCFNSLEVDLIREQVQQLISLPMWVCLLP
TRLELELKKVPKLRKFWNLVKKNYDKMEKKAAEQANKERTFLSFLIRKFLSVLKSIPPSG
PVSLEKIHYCERFIELMIDLEALLPTRRWFNTLLDDSHLVVHCYLSNLLKREKEGHLFCQ
LLDMLKFYTGFEINDQTGNALTQNEMTTMHYDRITSLQRAAFAHFQELHNFALSNVAAVD
TRDSLLKLFGPLSPNTLHQVASYLCLLPALPEGEETAYEKEMLLELLVSRHERRISQIEQ
LNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYE
IRQDIEDVVSRMKPWQSEYGGVVFGGWARMAQTILAFSIVEVAKPNIGENWPARVRADVT
INLNVRDQIKSEWEGLRKHDVCFLITVRPTKPYGTRFDRREPFVEQTGLVYVRGCEIQGM
LDEKGRVIEEGPEPKPKLKGDSRTFRVWLDPNQYQQDMTNTIQNGAEDVYETFNIIMRRK
PKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYGDQGSAHYSKMPNQISLLDFNDTFLS
INHLKACFPGYKVKVAEENPSLQKPPFRIKFPVTSNKGKKRKAEEEGDEEKEDDCTLIVE
PHVIPNRGPYPYNQPKRNTIQFTPTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNL
YHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRMGHGEEELETEKDFSRYGRVNY
VLARRLELLREVGRLQESLNVPGDVSYTCETAGHFYLYQVMSRWEEYLSKVKAKPGKQVD
VQDVNRHFPFHKYFSNAPQPIFKGQSYEEDMDVAEGCFRHIKKIFTQLEEFRAFELLRSG
LDRSKYLLVKEAKIIAMTCTHAALKRHDLVELGFKYDNILMEEAAQILEIETFIPLLLQN
PEDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRLGVPTVDLDAQGRAR
ASLCNLYNWRYKQLGNLPHVQLLPEFRSANAGLAYDFQLINVEDFNGVGESEPNPYFYQN
LAEAEYAVALFMYMRLLGYPADKISILTTYNGQKHLIRDVVNQRCGNNPFMGRPNKVTTV
DRFQGQQNDYIILSLVRTKAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAF
NQLAARPLQLHIVPNEYHPTNRLNWNPPAHPVQVIKNMPEMANLVYSMYMHMIQSTHQYR
QQQQLLPPPCQLTVEEAVPNPVGPEDEEEEGIETEEQAQAKEEEDAKEEPVEVVNIEEEH
HQMPEHPGRDSDSEDSPGEEDPAN
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaccgtacaagtaaagaagtcatatgcaccctctgtgtcccaaataaatgca
gagtttgtaacacagttggcaaataaatattgggcaccacatgtcaagaagaaattgccc
tttgacccaaaggttgtggaagatgtgtaccagaaagaaattctgaagtcaaagtttgca
atcaggaagatcatgctgcttgagtttagccagtatctggagaattacctgtgggtgaac
tattcccctgaggtatccagtaatgcctatttaatgacaatttgctgtattgttaatgag
aagttcagagaaaacgtcccagcatgggagacttttaagaagaagcctgaacattttaca
tattttttcaaatgtatcctggaagcatcgctggctgatggagatgacgagttgtcgctg
cgagagcaaactgttcaactcctctttctcgatcactgctttaacagcctggaagtggac
ttgatcagagaacaggtacagcagctcatctcccttcccatgtgggtttgtctgctacca
acacggcttgagcttgaattaaaaaaagtacccaaactgcggaagttttggaatctggtc
aagaagaattatgataaaatggaaaaaaaggcagcagaacaggctaacaaggagagaaca
tttctttcctttcttattaggaaattccttagcgtgctcaagtcaattcctccatcaggt
cccgtttctttggaaaaaatccactactgtgaaagatttatagagctgatgatcgatctg
gaggccttgcttcccacccgccgttggtttaacacccttctggatgattctcatcttgtg
gtccactgttacctgtccaacctccttaaaagggaaaaagaaggacatcttttttgccag
cttttggacatgcttaagttctacacaggctttgaaattaatgaccagacagggaatgct
ctgacacagaatgaaatgacaacgatgcactatgatcgcatcacatctttgcagagggca
gcgtttgctcactttcaagaacttcataattttgctttgtcaaatgtggcagcagtggac
actcgagattccttgctaaaattgtttggacctctcagtcccaacacactccaccaggtg
gcatcgtatctctgtctcttgccagctctgcctgaaggagaagagacagcctatgagaag
gagatgctcttggaactattggtgtcccgacatgagcggagaatatcccaaattgaacaa
cttaaccaaatgcccctttatcccacggagaagattatttgggatgaaaacattgttcct
acagaatattactctggggaaggttgtttggctctaccaaaactgaatctacagttcctg
actcttcatgactatcttctgaggaacttcaacctcttccgactggagtcaacctatgag
atcagacaagacattgaagatgtggtcagccggatgaagccatggcagtcagaatatgga
ggggttgtatttggtggctgggctaggatggcacagacaattctcgccttttccattgtt
gaggttgcaaaacccaacattggagagaactggccagccagagtgcgagccgatgtcacc
atcaacctgaatgtcagagaccaaataaagagcgaatgggaaggtctccgtaaacatgat
gtgtgcttcctgattacggttcgtccaaccaagccttacgggacccggtttgaccgcagg
gaaccctttgtagaacagactggcctagtgtacgtgcgagggtgtgagattcagggcatg
ctggatgagaaaggaagagtcatcgaagaaggtcctgagcctaaaccaaagcttaaaggt
gattcaagaacattcagggtctggctggacccaaaccagtatcaacaggacatgacaaac
actatccagaatggggcagaagatgtctatgagaccttcaatatcatcatgaggagaaaa
cctaaagagaacaacttcaaggccgttctggagaccatccgaaatctgatgaacactgac
tgtgtggttcctgactggctgcatgacatcatcctgggctatggggatcagggcagtgca
cattactccaaaatgcctaatcagatatctctgttggatttcaatgacaccttcctctcc
atcaatcacctgaaggcctgctttcctggttataaggttaaagtcgctgaagaaaatccg
tctctacagaaacctccattcaggatcaagttccctgtgacaagcaacaagggaaagaaa
aggaaagcagaagaggagggggatgaggagaaagaggatgattgtactttaatagttgaa
cctcatgtcattccaaacagaggaccttacccatacaaccagccaaaacgcaatacaatt
cagttcacacctacacaaatagaggctatacgtgcaggcatgcaaccaggactgaccatg
gttgtaggacctccaggtacaggaaaaactgatgtggctgtgcagataatttctaatctc
tatcacaatttcccagaacaaagaactctaatagtaacacattctaaccaagctctgaac
cagctgtttgagaagatcatggctctggacatagacgagcgtcacctcctgcgtatgggt
cacggggaggaggagctggaaaccgagaaggatttcagcaggtatgggcgagttaactat
gtcctggctcggaggttggagcttctgagggaggtgggacggcttcaggagagccttaat
gtgccaggagatgtttcctacacttgtgagacagctggccatttctacttgtatcaagtg
atgtctcgctgggaggagtacctcagcaaagtaaaagccaaacctggaaagcaggttgat
gttcaggacgttaacaggcattttcctttccacaagtacttctcgaatgcaccacagcct
atctttaaaggacagtcctatgaagaagatatggacgttgctgaaggttgcttcaggcac
ataaagaaaatattcactcagctggaggaattcagagcctttgaacttctgcgcagcgga
ctggataggtccaagtatctcctggtaaaagaagcaaagattatagctatgacctgtacg
cacgctgccttgaaacgtcatgacctagttgagctgggatttaagtatgacaacatccta
atggaagaagcagctcaaattcttgagattgaaacattcattccactgctcctgcagaac
ccggaggatggcttcagtaggctgaagaggtggattatgatcggtgaccaccaccagctg
ccgccagttattaaaaacatggctttccagaaatactccaatatggagcagtccctgttc
acgaggtttgttcgtttgggagtaccaaccgttgatttggatgctcagggcagagcgaga
gcaagcttgtgcaacctttacaactggcgttacaaacaactggggaacctaccccacgtt
cagctgctgccagagttcagatcagccaacgctgggcttgcctatgacttccagcttatc
aatgtggaagattttaatggtgttggagagtctgagccaaacccctacttttatcagaac
cttgctgaagcagaatacgcagtggcactttttatgtacatgcggctactgggttaccct
gcagataagatcagcatattgaccacctacaatgggcagaagcacctcatccgtgatgtt
gtgaaccagcgctgtggaaacaaccctttcatgggccgaccaaataaggtgacaacagtt
gacagatttcagggacagcaaaatgattacatcatcctctcactggtcagaactaaagcc
gtgggacatcttagagatgtacggaggttagttgttgcgatgtccagagccaggctaggg
ctgtatatttttgcccgagtctcgttgttccagaactgctttgagctgactcctgccttt
aaccagcttgcagcacggcccctccagctgcacatagtgccaaatgagtaccaccccaca
aacagactgaattggaatccaccagcccaccctgttcaggtaatcaagaacatgccagag
atggccaaccttgtgtacagcatgtatatgcacatgattcagagtacccaccaatacaga
cagcaacaacagcttctgcctcccccgtgtcaactgacagttgaagaggctgttccaaat
ccagtcgggccagaggatgaagaggaagaaggaatagagacagaagaacaggcccaggcc
aaagaggaagaagacgcaaaagaggagccagtggaagtggtgaacatagaggaagaacac
caccaaatgccagaacaccctggtagagacagcgacagtgaggacagtccaggagaagaa
gaccctgcaaactaa
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integrated database retrieval system
