Polyodon spathula (Mississippi paddlefish): 121330019
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Entry
121330019 CDS
T07273
Name
(RefSeq) autophagy-related protein 13-like isoform X1
KO
K08331
autophagy-related protein 13
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04136
Autophagy - other
pspa04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121330019
04136 Autophagy - other
121330019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121330019
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121330019
Membrane trafficking [BR:
pspa04131
]
Autophagy
Autophagosome formation proteins
ULK complex
121330019
Atg1 complex
121330019
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121330019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
121330019
NCBI-ProteinID:
XP_041132154
LinkDB
All DBs
Position
17:2965675..2975128
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AA seq
546 aa
AA seq
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MDSDLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYNR
LSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLTGLGEGFQSVRVGIVGTPV
GTITLSCAYRTNLAFMSTRQFERTAPIMGIIIDHFVDRPFANMGHMHPCNYRTATEDEGV
TYPGVEDSQEVCTTSFSTSPPSQCVCTVSKAHFQTPKSVVMDTLKVPIMGLAFSHQLYSS
RLSYHPPALGSADLCYQPVFNAAHPHQMVIPGKEGGVPQAPVQPSHGTPADHGRMPTCTP
SSMARRIPATPSSSGEEAETLSQSSEAKSSSPPDILETTFTRKVGAFVNKPANQVTTACL
DLPFAAFAPKNFDMEENDLMVNPPDSPVVESPLQGSLHSDGSTGSSGPLQDDFVMVDFKP
AFSKDDLLPIDLGTFYREFQNPPQLNSLSIDVSAQSMAEDLDTLPVKLALYEQKIDEFDA
FVETLQ
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggacagtgatctgagcccacaggataagaaggacctggataagttcattaagtttttt
gccttaaagaccgtacaggtaattgttcaagctcggcttggtgaaaaaatctgtacacgc
tcgtcttcttccccgacaggatcagactggttcaatttagcaataaaagacatccctgaa
gttacccatgaagctaagaaggctttggctgggcagcttccaggcattggaaggtccatg
tgtgtggaaatctcccttaaaacctcagagggtgactccatggaactcgagacatggtgc
ttggaaatgaatgaaaagtgtgataaggatatcaaagtgtcatacactgtttacaacaga
ctgtcattgctactgaaatccttacttgcaataacaagggtaacaccagcatacaagctg
tccaggaaacagggacacgactatgtcatactctacaggatatattttggtgaagtgcag
ctcactggactgggtgaaggttttcagagtgtacgtgttgggatagtagggactccggtc
ggcaccatcaccttgtcgtgtgcttacaggactaacctggccttcatgtccaccagacag
tttgagcggactgcacccatcatggggatcataatagatcattttgtggatcgccccttc
gctaacatgggacatatgcatccttgcaactacaggacagcaactgaggatgaaggtgtg
acataccctggtgtggaggattcacaggaggtctgcaccacgtcgttctccacctctccc
ccttcacagtgtgtgtgtactgtaagtaaggcacattttcagacaccgaaatctgtggtg
atggacactctgaaagtccccatcatggggttggccttttcccaccaactgtacagctct
cgtctttcctatcatccacctgctctcggatcagctgacctttgctaccaaccagtcttt
aatgctgcccatcctcaccagatggttatccctgggaaggaggggggagtgccccaggcc
ccagtgcagccctcacatggcaccccggccgaccacggaagaatgcccacctgtaccccc
tcaagcatggctcgccgtatcccagcaacaccctccagcagtggggaggaggcggagacg
ttatcccaaagcagtgaggcgaagagcagctctccaccagacatcctagaaaccaccttc
acaaggaaagtgggggccttcgtcaacaagcctgccaaccaggtgaccacagcatgtttg
gatttaccctttgctgcatttgcaccaaagaactttgacatggaggaaaacgaccttatg
gtcaaccctcctgactccccagtggttgagtctccactgcaggggagtttgcattctgat
ggctcgactgggagcagtgggcctctgcaggacgattttgtcatggtggactttaaacct
gccttttcaaaggatgatctccttccaattgacctgggaacgttttatcgggagtttcag
aacccacctcagctcaacagcctctctattgacgtcagcgcacagtccatggcagaggac
ttggacacgctacctgtgaagctggccttatatgagcaaaagattgatgaatttgatgct
ttcgtagaaaccctgcagtaa
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