Polyodon spathula (Mississippi paddlefish): 121330055
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Entry
121330055 CDS
T07273
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
pspa04148
Efferocytosis
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121330055 (vps18)
04148 Efferocytosis
121330055 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121330055 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121330055 (vps18)
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121330055 (vps18)
Hops complex
121330055 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_16
zf-RING_5
zf-ANAPC11
zf-RING_11
LETM1_C
DUF5600
DUF1664
KNOX2
DUF4446
zf-RING_UBOX
zf-C3HC4_2
zf-C4H2
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
121330055
NCBI-ProteinID:
XP_041132243
LinkDB
All DBs
Position
17:26221437..26228167
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AA seq
982 aa
AA seq
DB search
MASILDEYEDSQTIRHSTQQQQQQHTRLSASNIGITHSGFVNARLEEEKPIFNKQRIDFS
PPEKINHFAVCNNQLCMSLGKDTLLRIDLGKPDQPNQIELGRKDDAKVHKLFLDPTGSHL
LISLNTNECLYLNRNTQKVRSLSRWKGHLIESIGWNKLLGTETNTWPILVGTSQGQIYEA
EISTSEGSLFNTNPDQYFRLVYTLDEDGRSAPVCCLEIERGIESKFFIIATTRKRLFQFI
GKVPEGTEQQGFSSIFSQNADHFPSFQEFPANLGFSEIAFYTPKLRTSPRSFAWMMGNGV
LYGTLDYTRPDSLLSDVQVWDYPPDIDFNFNKPISIVLTQFHFLLLLPDRVKAVCILNGQ
VVYEDVFPDKFGSLKKMTKDSAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMSKFDLAR
EYCKDRPECLDIVLAKEAEHCFQNKKYLESAKCYALTQNYFEEIALKFIEAKQEDALKEF
LMKKLNNLKPSEKTQITLLVTWLTELCLNRLGTLEGDESKRSLFLESREEFRKFLSSSKI
KECLYNNRTTIYDLLASHGNVEDMVFFSVIMQDYERVISHYCQHDDYEAALEVLSKHRDE
KLFYKFSPVLMQHIPRKVVDAWIQMGKKLDSKNLIPALVNYSQIGSTEQINETVRYMEFC
VYELAVTEEAIHNYLLSLYAKYKPESLLLYLEQTVTHSSDIHYDLKYALRLCAEHGHHKA
CVHVYKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKK
AMNCLSSCNLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNKHIEELKQEMEEATESAKR
IREDIQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCSHMFHSDCLHQEVSPHLSAYKQ
TKLEELQKKLLTTSQPTKSRHRPKEEDMASLGKGQLSRQQIKSDIDDIIAAECVYCGELM
IKSIDKPFIDPQKYENEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatacttgatgaatacgaggactctcagaccattcggcactcaacgcagcag
cagcagcagcagcatacccgcctttcagcatctaacattgggattacacactcaggattc
gtaaatgccagattggaggaagagaagccgatattcaataagcagaggattgatttttct
ccccctgagaagattaatcactttgcagtctgcaataaccaactttgtatgagccttggg
aaagacaccctgttgagaattgatcttggaaagcctgatcaaccaaatcagattgaactt
ggacgcaaggatgatgcaaaagtacacaagctattcctggatcctacaggttcccatctg
ctgatcagcctaaatacaaatgagtgcctgtacctgaacagaaacactcagaaggtgcgg
agcctctcgcgatggaagggtcatctcattgagagcattggctggaacaagctcctgggt
acagagaccaacacgtggcccatcctggtgggcaccagccagggacagatctatgaggca
gagatctcgacatcagaaggaagcctattcaataccaacccggaccagtattttagactg
gtctacactttagatgaagatggcagatcggcccctgtttgctgtttggaaattgagcgg
gggatcgaatcgaagttcttcatcatagcgaccacacggaaacgtctgttccagtttatc
gggaaagtgccagaaggtacagagcagcagggctttagttccattttcagccaaaacgcg
gaccatttccccagcttccaggagtttccagccaatcttggcttcagtgaaatagcgttt
tacacccccaagctgcgtacctcgccacgatcatttgcctggatgatgggtaatggagtt
ttatacggaacgttggactatacccgtccagattctctgttaagtgatgttcaggtttgg
gactatcctccggatatcgatttcaatttcaacaagcccatttccattgtcctgacgcag
ttccattttctgctcttgttgcctgatcgggtgaaagctgtatgcatcttaaatgggcag
gtggtttatgaagatgtcttcccagacaagtttggttccttgaaaaagatgaccaaagac
tcggctggcggattagtgtggatttacaccgagaaagctgttttccgctaccacattcag
agagaggcgcgagatgtgtggcaaatgtacatgagcatgagcaagtttgacttggccaga
gagtattgcaaagacaggcccgagtgccttgacattgtcttggccaaagaagctgagcac
tgcttccagaataagaagtacctggagagcgccaagtgttatgctctgacgcaaaactat
tttgaagagattgccttaaagttcattgaagccaagcaggaagatgctctgaaagaattc
ctaatgaagaaactcaacaacctgaagcccagcgagaagacacagatcacccttctggtc
acctggcttacggaactctgcctcaacaggttgggcaccttagaaggggatgagtcaaaa
cgtagccttttcttggagagcagagaagagttccgcaagttcctcagcagctccaaaatc
aaagaatgtctgtacaacaacagaacgaccatttatgaccttttggccagtcacggaaat
gtggaagacatggtgttcttctcggttattatgcaggactatgagcgtgtgatctcccac
tattgccagcatgatgactacgaagcagccctggaggtgttatctaagcaccgcgatgag
aagctgttctacaagttctcaccagtcctcatgcaacacatccccaggaaggtggtagat
gcctggatccagatggggaagaaactagactccaagaatctcatccctgctctggtcaac
tacagccagattggcagtacagagcagatcaatgagaccgtacgctacatggagttttgt
gtatatgagctggctgtaacggaagaggcaatacacaactacctgctgtctctctatgcc
aagtacaagccagagtctttgcttttgtacttggagcagactgtaacacactcttcagac
attcactatgacctcaagtacgccttgcgtctgtgtgctgaacatgggcatcataaagcc
tgcgtgcacgtctataagataatggaactgtatgaggaggcagtggatctggcattgcag
gtagatgtggacctggccaaatcctgtgcagacctgccggaggatgacgaggaactgcgg
aagaagctgtggctgaagatcgcccgccacgtggtgcaggaggagaaggacgtgaagaaa
gccatgaactgcctctccagctgcaacctgctcaagattgaagacatcctgcccttcttc
ccagatttcgtcaccattgaccacttcaaggaggccatctgcaactcgctggaggagtac
aacaaacatatcgaggagctcaagcaggagatggaagaagccacagagagtgccaagcgg
attcgagaggacatccaggagatgaggaacaagtacggtgtggtcgagtctcaggagaaa
tgcgctgcctgtgacttccccctgctcaaccgcccattttacctattcctgtgcagccac
atgttccactctgactgcctccatcaagaggtcagcccccacctgtctgcttacaagcag
accaagctggaggaactccaaaagaagctattgaccaccagccagcccaccaagtccaga
catcggccgaaagaggaggacatggcaagcctgggaaaaggacagctgagccgacagcag
atcaagtcagatattgatgacatcattgctgcagagtgcgtgtactgtggggagctgatg
atcaagtctattgataagccttttattgacccacagaagtatgagaatgaaaaatcaagc
tggctgtaa
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integrated database retrieval system
