Polyodon spathula (Mississippi paddlefish): 121330057
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Entry
121330057 CDS
T07273
Name
(RefSeq) leucine-rich repeat-containing protein 4C-like
KO
K07523
netrin-G1 ligand
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121330057
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121330057
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
NGL family
121330057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_1
V-set
LRR_14
Ig_2
LRR_9
LRRNT
Ig_6
Mid2
Sp38
Podoplanin
DUF7617
DUF6821
DUF4293
RIFIN
Herpes_gE_N
Syndecan
Motif
Other DBs
NCBI-GeneID:
121330057
NCBI-ProteinID:
XP_041132245
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All DBs
Position
17:13839793..14514105
Genome browser
AA seq
636 aa
AA seq
DB search
MLNKMTSHPQQTMRGPRWNRALSNPLLVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICTRRGLREVPDGISTNTRYLNLQENQIQIIKVDSFKHLRHLEILQLSKNHIRNIEIGAF
NGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLG
ELKRLSYISEGAFEGLSNLRYLNLGMCNLREIPNLTPLVKLDELELSGNQLSIIRPGSFQ
GLIHLQKLWMMHAQIQAIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLHH
NPWNCNCDILWLSWWLKEMVPANTSCCARCHSPSSFKGRYIGELDQNYFTCYAPVIVEPP
ADLNVTEGMAAELKCRASTALTSVSWITPNGTIMTHGAYKVRISVLNDGTLNFTNVTAQD
TGTYTCMVSNSAGNTTASATLNVSATENSTFSYFTTVTVETIEPSQDEGRTTEQSTSPTT
SSGLEATYTTTPVTPQSTKSTEKTFTIPVTEGSLNGLDEVMKTTKIIIGCFVAITLMAAV
MLIIFYKMRKQHHRQNHHAPTRTIEIINVDEEITGGPPLESHLTLPPLEHEHLNHYNSYK
TPYNHTGNTINTIHSSVHEPLLMRATSKENVQETQI
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacatcgcacccgcagcagacaatgagaggtcctaggtggaacagg
gccttgtccaaccccttgcttgtgctgctgttggctcttcagttgctggtggtggctggc
ctggtgagagcccagacctgcccttcggtatgttcctgtagcaaccagttcagcaaagtg
atttgcacccgacgaggactcagggaagtgcctgacggcatctccaccaacacccgctat
ttgaatctgcaggagaaccagatccagatcatcaaagtggacagcttcaaacacctgcgc
cacctggagatcctgcagctcagcaagaaccacatccgcaacattgagattggggccttt
aatgggctggccagtctcaacaccttggagctctttgataacagactgaccacgatcccc
aatggggctttcgaatacctctccaagctgaaggagctgtggttgaggaacaaccccatc
gagagcatcccctcctatgcttttaatcgggtgccctccttaaggagacttgacttggga
gagctcaagcgcctctcctatatctccgaaggggcttttgagggcctttcgaacctcagg
tacctaaacctgggaatgtgcaaccttagagagatcccaaacctcacgcctctggtcaaa
ctggatgagttggagctttcaggcaaccagctttccatcatccgaccaggatccttccag
gggctgattcacctgcagaagctgtggatgatgcatgcccagattcaggccattgagagg
aactcttttgatgacttgcagtccttggtagagttgaacttagcccacaacaacttgacc
ttgctcccccatgacctcttcacgcccctccaccatcttgaaagggtccacctgcaccac
aatccttggaactgcaactgtgacatcctctggctcagctggtggcttaaagagatggtg
cctgccaacaccagctgctgtgcccgctgccactcaccttccagcttcaaggggcgctat
attggggaactggaccagaattacttcacttgctatgctcctgttattgtggaaccccct
gctgatcttaatgtgactgagggcatggctgcagagcttaaatgccgggcatccactgcc
ttgacttcagtcagctggatcacgcccaatggaaccataatgactcatggggcgtacaag
gttcggatctcggtcctcaacgatggtacattaaattttaccaatgttactgcacaggat
acaggaacttatacatgtatggtgagcaattcagccggaaataccacagcctctgccacg
cttaacgtttctgccaccgagaatagcacctttagctatttcacaactgttacggtggaa
accattgagccttctcaagatgagggtaggaccacagagcaaagtacgagtcccaccacc
tctagtggcttggaggctacctacaccacaacacccgtcaccccccagagcaccaagtcc
acagagaagacttttaccatccctgtgacagaaggaagcctaaatggactggatgaagtg
atgaagactactaagataatcattggctgctttgtggccatcacacttatggctgctgtc
atgcttatcatcttctacaaaatgcgcaagcagcaccacaggcagaaccaccatgccccc
acaagaacaattgagattatcaacgtggatgaagaaatcacaggaggtccacctctggaa
agccacctgaccttgcccccgctggagcacgaacacctcaaccactacaactcctataag
actccatataaccacacaggcaacacaatcaataccatacacagctctgtgcatgaacct
ttgttaatgcgggcgacctcaaaagaaaatgtacaagagactcaaatttaa
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