Polyodon spathula (Mississippi paddlefish): 121330213
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Entry
121330213 CDS
T07273
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121330213
03015 mRNA surveillance pathway
121330213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121330213
03041 Spliceosome [BR:
pspa03041
]
121330213
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121330213
Spliceosome [BR:
pspa03041
]
Complex C
Other components
EJC/TREX
121330213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
121330213
NCBI-ProteinID:
XP_041132489
LinkDB
All DBs
Position
17:complement(29679342..29685927)
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AA seq
671 aa
AA seq
DB search
MAVAVKSFQEQLEKAKEGLKNVDENIRKLIGRDPNEFRPGQARRLTIPGPGGGRGRGINL
LRRGLSDSGGGPPAKYRDIDGALLRLAGDRRARRDSRHESDAEDEDDDKKPALQSSVVAT
SKERTRRDLIQDQNTDEKGKQRNRRMFGLLMGTLQKFKQESTVATERQKRRHEIEHKLEI
QAEAERKKVENERRELFEERRAKQSELRLLEQKVELAQLQEEWNDHNSKIIKYIRTKTKP
PIFYMPGKMCSATRKLFEESQKKMNAIFEERREEFADHLNKMVARPRRQSVKEKQEELHN
EDLQNEEEGKPPRQEAEMEETGNRKRDVEMEEAGEGEVSIVHSDLEPEQEEVTKLEEEQG
QPVELRGGEEEEEVADAREERQPVCQPESISEAKEDERVQQGESDQEMEFKESPGVAEME
VSQDKKEEEEVVKEEVEQKQESTTEPERENGLEAESPVEQEPVSDPEPVLEMVVTKEPES
QSPTEEIGVVAPGPENRQQLQQQLQQATEKQPNTVSAVHSKSRTRSQSRGRVGEKKKSRN
SSSSSSSSTSSSSSSGSSSSSSGSSQSSSSSSSSSTSSSSSSRSRARGHNRDRKRRQRSP
EKDRERERKRGSSGVDRNHKSSKNSSRDVKGSKEKSSRSDGKRSVTEGSRSDKKPPRSER
DRKPDKKDKRR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagctgtgaagtcttttcaggagcagcttgaaaaagcaaaagaaggattaaaa
aatgtagacgaaaatattcgcaaattgattggcagggaccccaacgaatttaggcctggc
caagcaagaaggctaaccatcccaggcccaggaggaggtagggggcgaggaattaattta
ctgaggcgtggactctcagacagcggaggtggacccccagctaaatatagagatattgat
ggggcactcttgaggctggctggagatcgacgggcacggagagattcacgccatgaaagc
gacgcagaggacgaagatgatgataaaaagccggcgttgcagtcttcagttgttgctacc
tccaaagaacgaacacgtcgagaccttattcaagaccaaaatacggatgagaaaggcaaa
caaaggaatcgacgtatgtttggcctgttgatgggtacacttcagaagttcaaacaagaa
tctacagtggcgacagaaaggcaaaaaagacgtcacgagatagaacacaagctagaaatc
caagcagaagcggaacgcaaaaaggttgaaaatgaacgacgagaactctttgaagaacgt
cgtgccaaacaatcagagctgagacttttggaacaaaaagtggaactggctcagttgcaa
gaagaatggaatgatcacaactctaaaataataaaatatataagaacaaagacaaaacct
ccaatcttctatatgcctggcaaaatgtgttcagccactcgtaagctctttgaggagtct
cagaaaaaaatgaatgccatatttgaggaaaggcgtgaagagtttgcagaccatctcaac
aaaatggtggcccgtcccagacgccagtcagtgaaggagaaacaggaggaattacacaat
gaagatctgcagaacgaagaggagggtaagccgcctcggcaggaggcagagatggaggag
acaggtaaccggaaacgtgatgtagagatggaggaagcaggagagggggaggtgagcata
gttcatagtgatttggaaccagaacaggaagaggttacaaaactggaggaggagcagggg
cagccagtggagcttagaggaggagaagaggaggaggaagttgctgatgctagggaagaa
aggcagccagtgtgtcagccagagagcatttcagaggccaaggaggatgaaagggttcag
cagggagagagtgatcaggagatggagtttaaagagagcccaggggtagcagaaatggag
gttagccaggataaaaaggaagaggaggaagtagttaaggaagaggtagagcagaaacag
gaatccacaacggaacctgaaagggaaaacggccttgaagctgaatcccctgttgaacag
gagccagtgtctgatcctgagccagttctagaaatggtagtaacgaaggagcccgaaagc
caatctcccacagaggaaattggtgtcgtggcccctggaccagagaacaggcagcagctg
cagcaacagttgcagcaggcgacagaaaagcagcctaacacagtgtcagcagttcacagc
aaaagcaggactaggagccagagcaggggtagggtgggagagaagaagaaaagcaggaac
agcagtagctcctcctccagcagcacctcgagctccagcagcagtggcagcagctctagc
agtagcggcagcagccagagcagctccagcagtagtagcagcagcaccagcagtagcagc
agtagccgcagccgggcaaggggacacaaccgggatagaaagcgcaggcaaagaagtcca
gagaaagacagggaaagggagaggaagagaggcagttcaggggtggacaggaaccacaag
tcctccaaaaacagtagccgggatgtgaaggggtccaaagagaagagctccaggtcagac
gggaagaggtcagtgacagagggcagtcgatcggataaaaagccaccccgcagcgagaga
gatcgcaaaccagacaaaaaggacaagagacgctaa
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