Polyodon spathula (Mississippi paddlefish): 121330246
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Entry
121330246 CDS
T07273
Name
(RefSeq) low-density lipoprotein receptor-related protein 4-like isoform X1
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121330246
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121330246
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
SGL
Vgb_lyase
cEGF
EGF_LRP2
EGF_CA
Syndecan
Motif
Other DBs
NCBI-GeneID:
121330246
NCBI-ProteinID:
XP_041132535
LinkDB
All DBs
Position
17:complement(1408999..1489573)
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AA seq
1924 aa
AA seq
DB search
MQLAAVCGTLIASVLLIQAIAGNPECSCGRNHFTCAVNTFGECTCIPAQWQCDGDNDCGD
HSDEDGCTLPTCSPLDFHCDNGKCIRRSWVCDGDNDCEDDSDEQDCPPRECEEDEFHCQN
GYCIRSLWHCDGDNDCGDNSDEQCDLRKCSDKEFRCTDGSCIAEHWYCDGDIDCKDGSDE
ESCPSEVPMATCSVEEFQCSYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSGEFMCS
SGLCINAGWRCDGDSDCDDQSDEKNCTTSTCTTDQFRCKSGRCVRLSWRCDGEDDCSDNS
DEIGCEKTDSPQCASDQFLCGNGRCIGQRKVCNEVSDCGDGSDESPHQNCRPRSSEENCN
VNNGGCSQKCQMARGQVQCTCHTGFRLKDDGRSCQDVDECSEEGYCSQGCTNTEGGFQCW
CVHGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHNM
ELVFWSDVTLDRIMKANLNGSNVEEVVSTGLESPGGLAIDWIHDKLYWTDSGTSRIEVAN
VDGTHRKVLLWQNMEKPRAIALHPIEGKIYWTDWGNTPRIEYANMDGSNRRIIADTHLFW
PNGLTIDYAGHRMYWVDAKHHVIERANLDGSNRKAVISQGLPHPFAITVFEDSLYWTDWH
TKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGGRNRCGNNNGGCSHLCLPSNK
TFTCTCPTGFQKIDNFNCAQSLDKFLLFARRTDIRRISFDTEDKSDDVIPLADVRSAVAL
DWDSKDEYIYWSDVTTDSINRAKWDGSRQQVVVDTSLESPAGLAFDWVTSKLYWTDAGTD
RIEVSSADGSMRTVLIWENLDRPRDVVVDPIGGYMYWTDWGASPKIERAGMDASNRIVII
SSNLTWPNGLAIDYETERLYWADAGMKTIDFSNLDGTDRQVLIGSQLPHPFGLTVYLDKI
YWTDWQSKSIQSANKLSGLGRVTLRENLENLMDIHMFHRHRSPVPTVCKVNNGGCSHLCL
LAPLPKGSSCACPTGITLQSDGKTCAHGMNSFLIFARRTDIRMVSLDIPYFADVVLAINE
SLKNTIAIAVDPKEGKVYWSDSTLKKISRSNLNGTEYEDIITTGLMTTDGLAVDAVGRKI
YWTDTGTNRIEVANLDGSMRKVLIWQNLDSPRAIALYHEMGYMFWTDWGEHAKLERSGMD
GTGRVVLISNNLGWPNGLAIDKAGSQLLWADAHTERIEAADLNGANRRTLVSPVQHPYGL
TLLGPHIYWTDWQTRSIQRTDKNTGGSSITVRGNLPGLMDIQAVDRNKPLGFNKCGVRNG
GCSHLCLPNPSSLSCSCPTGIQLKSDGRTCDDSPETYLLFSSRGSIRRISLDTNDHTDVY
VPVPELNNVISLDYDSVDGKVYYTDVHLDVIRRANLNGSTLETVISHGLKTTDGLAVDWV
ARNLYWTDTGRNTIEVARLDGSNRKVLINNSLDEPRAIAVFPRKGYLFWTDWGHIAKIER
SHLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESSDLNGKLRQILVSPVSH
PFALTQMETVSSKLTILSHLSQQDRWIYWTDWQTKSIQRVDKYTGRSKETILANVEGLMD
IIVVSPQRQTGTNFCGVKNGGCTHLCFARTADFVCACPDESDGKPCSTIPGYVPPDPDTS
TASATQPDKSHKNSGVSTEELTPPAHTPAKNCSVQDTGLANCNTEQSDGPVPSDESLHMS
YIIGGVLTMLAFLILIAAFIIYRHKKSKFADPGVSNLTYSNPSYRTSTQEVKIETVQKPP
IYNQLRCKKETGIDNSYTKEKIKIVEGICLLSSDELYWEDLKQMKPSRVGILRDHVCMKT
DTVSLQASSSGSLDDTEMEQLLQEEQQSECSSVHTTRATTSERHGSLPDTGWEIQRKPST
ESEV
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgcagcggtttgtggtactctgatagcttcagtgcttttaattcaagccatt
gcaggaaacccggaatgctcatgtggacgaaatcatttcacatgtgcggtgaataccttt
ggggagtgcacctgcattccagctcagtggcagtgcgacggggacaatgactgtggagac
cacagtgatgaagatggatgcactcttcctacctgctccccactggatttccactgcgac
aacgggaagtgtatccgtcgctcctgggtgtgcgatggggacaatgactgtgaagatgat
tcagatgagcaagattgtcctccccgggagtgtgaagaggatgagttccactgccagaac
ggatactgtatccgcagcctgtggcactgcgatggagacaatgactgtggggacaacagc
gacgagcagtgtgacctgaggaaatgttcagacaaggagttccggtgtactgatggaagc
tgtatcgctgaacactggtactgcgatggagacatagactgcaaagacgggtcagatgag
gaaagctgcccctctgaagttcccatggcgacgtgcagcgtggaggagttccagtgctcg
tacggccgctgcatcctcgatatctaccactgtgacggcgatgacgactgtggtgactgg
tctgacgagtctgactgctcctctcaccagccctgcaggtcaggcgagttcatgtgcagc
agcggcctgtgcatcaacgctggctggaggtgtgatggagactctgactgcgatgaccag
tccgatgagaaaaactgcaccacctccacctgtaccaccgaccagttccgctgcaagtct
gggcgctgtgtgcggttatcatggagatgtgatggggaagacgactgctcagataacagt
gacgaaataggctgtgagaaaacagattcccctcagtgtgcttcagaccaattcctgtgt
gggaatggccgctgcattggtcagaggaaggtgtgcaatgaggtcagcgactgtggagac
ggcagtgatgagagcccgcaccagaactgccgtcccaggtcgagtgaggagaattgcaat
gtgaacaatggtggctgttctcagaaatgccagatggctcgaggacaggtgcagtgcacg
tgtcacactgggttcaggctgaaggatgacgggaggtcatgtcaagatgtggatgagtgt
tcggaagaaggctactgcagtcagggttgtactaacactgagggaggtttccagtgctgg
tgtgtgcacggctatgaactccgacccgataaacgcagctgcaaagcattagggccagag
cctgttctactgtttgccaaccggatcgacatccgacaagtgcttccccaccgctccgag
tacacactcctgctcaacaacctggagaacgccattgctctggacttccaccacaacatg
gagctggtcttctggtcagacgtcacgctggacaggatcatgaaggccaacttgaacggg
agcaatgtggaggaggtggtgtcgacaggcctcgagagtccaggtggtctggcaattgac
tggatccacgacaaactgtactggacagactctggcacatctcgcattgaggtcgccaac
gtggatggcactcacaggaaggtgctcctgtggcaaaacatggagaagccacgagccata
gctctccacccaatcgaagggaagatctactggaccgactggggcaacactccgcggatt
gagtacgccaacatggacggctccaatcgcaggatcattgctgacacccacctcttttgg
ccaaacgggctcaccatcgactacgctggccacagaatgtactgggtggatgccaagcat
catgtgattgagcgagccaatctggatgggagcaacaggaaagcggtcatcagccaaggg
ttgcctcatccctttgccatcactgtctttgaggacagtctgtactggactgactggcac
accaagagcatcaacagtgccaacaagttcacaggcaagaaccaggagatcatccgcaat
aaactccacttccccatggacatccacacactgcacccccagcggcaaccagcaggaggg
agaaaccgctgtgggaacaacaatgggggttgcagccacctctgcctgcccagcaacaaa
acattcacctgtacctgccccactggcttccagaagatcgacaatttcaactgcgctcaa
agtcttgacaagttcctgctttttgcccgaaggacggacatccgtcggatcagcttcgac
acagaggacaagtccgacgatgtcatcccgctggctgatgtgcgcagcgctgtggccctg
gactgggattccaaggacgagtacatctactggagcgacgtcaccaccgactctattaac
agggccaagtgggatggctccagacagcaggttgttgtggataccagtctggagagtcca
gcgggtctagcttttgactgggtgaccagcaaactctactggacagatgcaggtacagac
aggattgaagtgtccagtgcagatggcagcatgaggactgtgctgatctgggagaatctg
gacagacccagggacgttgtagtggatcccattggagggtacatgtactggacagactgg
ggagccagccccaagatcgagcgggcagggatggatgcctcaaaccgcattgtcatcatc
tcctccaacctgacctggcccaatggcctggcgattgactatgagactgagaggctgtac
tgggcagatgctggcatgaaaaccatagacttctccaacttggatggcactgacagacag
gtgttgattggaagccagctgccccacccttttgggctgactgtgtatctggacaaaatc
tactggacagactggcagtccaagagcatccaaagtgctaataaactgagtggcctgggc
cgagtcactctgagagagaacctggagaacctcatggatattcacatgtttcaccggcac
aggtccccagtgcccacagtgtgtaaagtgaataatggaggatgcagtcacctctgtctg
ctggctcccctgcccaagggctccagctgtgcctgcccaacaggaatcaccctccagtct
gatggaaagacctgtgctcacggcatgaacagtttcctgatttttgcacgaaggacagac
atccgcatggtttctttggacatcccctactttgctgatgttgttcttgcaatcaatgaa
tctttgaaaaataccattgccattgctgtggatcctaaagaagggaaggtttactggtca
gacagtacattgaaaaaaataagcagatccaacctgaatggaacagagtatgaagatatt
atcacaactggtttaatgacgaccgatggactggctgtggatgctgtaggccgtaagatt
tactggactgacactgggaccaaccggattgaagtcgccaatttggatggatcaatgaga
aaagttcttatttggcaaaatctggacagcccgagggccattgcactctaccatgaaatg
ggatatatgttctggactgactggggagagcatgcaaagctggaacgttctggaatggac
ggaacaggccgcgtggttctcatcagtaacaacctgggctggcccaatggacttgccata
gacaaggcagggtcccagctactgtgggctgatgctcatactgagcgtatcgaggcagct
gacctcaacggtgccaaccgtcgaactctggtctcaccagttcagcacccctatggactg
accctattgggcccacacatctactggacagactggcagacccgtagcatccagcgaaca
gacaagaacacgggcggcagcagcatcactgtgcgcggaaacctgcctggcctcatggac
attcaggccgtggaccggaacaagcccctgggctttaataagtgtggtgtgagaaacgga
ggctgcagccatttgtgcctccccaatcccagcagcctctcctgctcatgccccacgggg
atccagctgaagagcgacgggcggacatgtgacgactcccccgagacatacctgctcttc
tccagccgtggcagcatccgccgcatctccctggacaccaacgaccacactgacgtctac
gtgccagtgcctgagctcaacaacgtcatctcgctggactacgacagcgtggacggcaag
gtctattacacagacgtgcatctcgacgtcatcaggcgtgccaacctgaatggaagcacc
ttggagactgtgattagccacggcctgaaaacgacggacgggctggcagtggactgggtg
gctcggaatctatactggacagacacgggcaggaacaccatcgaggtagcccggctggac
ggctccaatcgcaaagtgctcattaacaacagtctggacgagcccagggccattgctgtg
ttcccaaggaaggggtatctcttctggactgattggggccacattgccaagattgagagg
tcacacctggatggttctgagcgcaaggtcctgatcaatactgacctgggctggcccaac
ggattgactctggactacgacacacgaaggatctactgggtcgatgcccacttagatcgg
atagagagttccgatctcaatggaaaactgcgccagatccttgtcagccctgtctcccat
ccctttgccctcacacagatggagacagtgtcttcaaaactaaccattctctcccacctc
tcgcagcaagaccggtggatttattggactgactggcagacaaagtctattcaacgagta
gacaagtacacaggaaggagcaaggagaccattcttgccaatgttgaggggctcatggac
attattgtagtgtcaccacagcggcagactggtaccaacttctgcggagttaaaaacggg
ggttgcactcacctttgctttgccagaactgcagattttgtttgtgcctgtccggatgaa
agtgatggaaaaccttgttccacaattccaggttatgtgccaccagatcctgacacttct
acagcaagtgctactcagcctgataaatctcacaagaactctggtgtctccacagaggaa
ctcacaccacctgcccatacacctgcaaaaaattgctctgtacaggatacaggtcttgca
aactgtaacactgagcagagtgatggtccagtcccctccgatgaaagcttgcacatgagt
tacatcattgggggagtcctcaccatgctggccttcctcatacttattgctgcctttatc
atatacaggcacaaaaaatcaaagtttgcagatccaggagtgagcaacctgacttacagt
aacccatcataccgcacctccacgcaagaggtgaagatagaaacggtgcagaagccaccg
atttataaccagctacgatgtaagaaagagactggcattgacaacagctacaccaaggag
aagatcaagattgtggaggggatctgcctgctgtccagcgacgagctgtactgggaggac
ctgaagcagatgaagccatcacgggtcgggattctgcgggatcacgtctgcatgaagaca
gacacggtgtccctgcaggccagcagcagcggctcgctggacgacacggagatggagcag
ctgctgcaggaggagcagcaatccgagtgcagcagcgtccacaccaccagggcaaccacg
tccgagcgacacggctctctgccagacacaggctgggagatccagcgcaagccctccact
gagagcgaggtctga
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integrated database retrieval system
