Polyodon spathula (Mississippi paddlefish): 121330342
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Entry
121330342 CDS
T07273
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121330342
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
121330342
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_NPHP3
TPR_8
TPR_1
SH3_1
ARM_TT21_4th
TPR_10
TPR_MalT
SH3_2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
121330342
NCBI-ProteinID:
XP_041132734
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Position
2:12716294..12744091
Genome browser
AA seq
1360 aa
AA seq
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MLTMETKERVKNGNSALYTIQEEKPSLVPVATVNNGFSDMFLKRSECGTTFTQAFATQSG
LSTGKFDHKKPGTSRGNTKAKGSNESQKEGSFSCSAAEDIFPTAIFVKLVMMRRDSGLPD
AEMQEMLREKLRILENDCREVMAVFSELSARLLSIHSDQDLIVITFKTFEEIWKFSTYHS
LGFVGHCMENLLLDQAFWLHHLDEEDAWINVLIDKESLSSMYRGIMMQEGSYFARCIAEQ
SYDRSSSGSELTLQHNDIVIVEPLSTGSSWMAQSLVDGTRGVISKSTLEPVCSFHQWFLK
TYTESIWMRSNSVQFDFPFQIAVGSCFASVYSKGSGPDELAFQTGDSIEIVGFLVSCLEW
FVGKHADSGKIGLVKTRDVKPSDSAYQSTEVFINEDEKSIFKFQEECFEEDSITWLKKMS
QTDIGTVYKMDKLGPLGSARMFPQEMQSMVSDQESRELKDKISISMELREPQKSTSLSEE
EDAMSIKGTPEPSGPGEPRFFISNSEENPSAEEFQPLLEFLNSLEYKPEFRNLYDFSFAF
LNSTFHGYSEVEELVCYLGLARETARKKKMLWAQTRVCFLLGKLCAKKCKFSQARVYFEE
ALSVVKEDFVDMFLLIAVNTNLAAIYLKQKNKEKCSAIFERIAALLMGIPNYICSTEMES
EILKYILKKTILAQNKLAEARTCFLLAKFYTKHKENDRALPFIERLQLLTKELSIRSRTM
PSDYYLTLGKLYGEKYLPHLAVSCVKHAALHSSSTLTDCLIGINFVLKNASRLYGMGRVG
VVIPTQVGPYLKRALNFFCNKGEQAQCRTICLCLSQLYQHHKMFNKAICYLLNAINTESW
TSSVDATDSLISLAWLHVLNYQYEKALDILNSILDTSPSRCTPLQQGAVYNMRAITLRHV
KDVKQAAESLQKALYICEEQDFKHNRAVVQANFGFLCVFAKATCLAETNLVKSVKLFSEL
QDAAYDVSFITVLLELGQYYISQNQKEKGPFYYEWAFLIAIMANHADCQIQATQLLCHFY
SAVSQNEAQCIIYSEHLLALARKTGDKKLEGEILESISQLYFSLGTERAYRSALEYTKRS
LGIFIDLKKKEKEAYAWLQAGKIYHTLRQNELVDLYIQVAQDSAVSTGDHYFALELFEAA
GDVFFNGSWDRDKAVLFYRDQALPLAIKTGALKIQLRLSNKLVELLLNLKAFGEAVEYAQ
TAMAISISFDDQLNERVSYHRLATVYHCLGQCELAEHYYLKALSLCSSPLEFDEETLYYV
KVYQTLGDMLFYELKDPHDAAGYYHLALAAAMDLGNKKSQLTLCTRLATIYHNFLVNREL
SLFFYQKARVFAADLNVRRINLSPDQYYQNTAKTQLKTFV
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgatggagacgaaagagcgcgtgaaaaacggtaattctgctttgtatactata
caagaggaaaaacccagtttggttccagtggccactgtaaataatggattttcagatatg
tttttaaaaaggagtgaatgtggaacgacgtttacgcaagcgtttgccacacagagtgga
ctttccactggaaagtttgatcacaagaagcctggaacaagtcgcggtaacactaaggca
aagggcagtaatgaatcgcagaaagagggttcgttttcttgttctgctgctgaggacatt
tttccaacagccatttttgtgaagctggtgatgatgagacgggacagcgggcttcctgat
gctgagatgcaggaaatgctgagagaaaagctccggattctggagaatgactgcagagag
gtcatggcagtcttcagtgaactgtcagccagactgctgtccatccacagtgaccaagac
ctgattgtcatcacattcaaaacatttgaagaaatatggaaattttcaacataccactcc
cttggttttgttggccactgcatggagaatttgctgctggaccaagccttttggttacac
catcttgatgaagaggatgcttggattaatgtccttatagacaaagaatctttaagttca
atgtatcgaggtatcatgatgcaggaaggaagttactttgcaaggtgcattgcggaacag
agttacgaccgctcttcctcaggcagtgaactgaccctgcagcacaatgacatagttatc
gttgagccgctttccactggctcctcttggatggcgcagtcattggttgatggcacgagg
ggcgttatttctaagtctacgctggaacctgtctgttcatttcatcaatggtttcttaaa
acctacacagaaagcatttggatgcgcagcaacagtgtgcagtttgattttccttttcag
atagctgtgggctcttgctttgcatctgtttattctaaaggcagtggaccagatgagctt
gccttccaaactggagactcaattgaaattgtgggctttcttgtttcatgcttggagtgg
tttgtggggaaacatgcagattctggaaagattggactggtaaagacaagggatgtgaag
ccaagtgattccgcttaccagtcaacagaagtatttataaatgaagacgagaagtcaatt
tttaaattccaagaagaatgttttgaagaagactctattacttggcttaagaagatgtca
caaacggacattggaacggtctataaaatggacaaactaggaccactgggttctgcaaga
atgtttcctcaagaaatgcaaagcatggtgagtgatcaagaaagtagggagctgaaggac
aaaataagtatttcaatggaactgagggaacctcagaaaagtacatctcttagtgaggaa
gaggatgctatgtctatcaagggcacccctgagccttcaggaccaggagagcctcgcttc
ttcatcagcaattcagaggaaaatcccagcgctgaggaattccagcccttactcgagttc
ctcaacagcttagagtacaaaccagaattcaggaacctctacgacttctccttcgctttc
ctcaattccacgtttcacggatactccgaggtggaggagctggtttgttatctgggctta
gccagggagacagcaagaaagaaaaagatgctttgggctcagacgagagtctgttttctc
ttggggaagctgtgtgccaagaaatgtaagttctctcaagccagagtttactttgaagag
gctctgagtgtcgtcaaagaggatttcgtggatatgtttttgttaattgctgtgaacaca
aacttagcagccatctacctgaagcaaaagaacaaggagaaatgttcagccattttcgag
cgtattgctgcactgctaatgggaattcccaactacatttgcagcacagaaatggagtct
gagatcttaaagtacattttgaagaagactatcttggctcagaacaaacttgctgaggca
agaacctgctttctcttagcaaaattctatactaaacataaggagaatgaccgggcttta
cctttcattgaaagacttcagttgcttaccaaagagttgtccatacgtagcaggacaatg
cccagtgactactacttaactttagggaagctgtatggggagaaatatcttccacacctt
gcagttagctgtgtgaaacatgctgctttacattccagcagtacgcttactgactgttta
attggcattaactttgtgttgaaaaatgcttcaaggctgtatggtatgggaagagttggt
gtagtgattccaactcaggttggaccttacctcaaacgagcacttaatttcttctgtaac
aaaggagagcaagcacagtgccggactatctgcctgtgtttatcacagctgtaccagcat
cataagatgtttaataaagctatctgttacttgcttaatgccataaatactgagtcctgg
actagctcagttgatgccactgattctctgatttcccttgcatggttacatgttttaaat
taccaatatgaaaaggctttagatatcttaaactccatattagatacttcaccttcacgc
tgtacacctctccaacaaggtgctgtttacaacatgcgtgccatcaccctcagacacgtc
aaggacgtaaaacaggcagctgagagtcttcagaaagctctgtacatttgtgaagagcaa
gacttcaaacataaccgggctgttgtacaggctaactttgggttcctgtgtgtgtttgcc
aaggcaacatgtcttgcggagaccaaccttgtgaagtctgtaaagcttttttctgaactg
caggatgccgcctatgatgtcagttttataactgtcttgcttgagcttggccagtattac
atcagccaaaatcaaaaagagaaagggccgttttattacgaatgggcattcctcatcgca
atcatggcaaaccatgctgattgccagatccaagccactcagctgctgtgtcatttctac
agtgcagtgtcccaaaacgaggctcagtgcatcatctacagcgagcacctgctggccttg
gctcgaaagacaggagacaagaagctggagggggagatactggaaagcattagccagctc
tacttcagtctggggactgaaagagcttacagatctgctctagagtatactaagagaagc
ctgggaatatttatagacctgaagaagaaagaaaaagaggcctatgcttggcttcaggca
gggaagatctaccacacactgaggcagaatgagctggtggacctttacattcaggttgcc
caggactctgctgtcagcaccggggatcattattttgctctggagctttttgaagcagca
ggggacgtctttttcaatggctcctgggacagagacaaagcagtgcttttctatagagac
caggcacttccacttgccatcaagaccggagctctgaagatacagctgaggctctctaac
aagctggtggagttactgctaaacctcaaggccttcggagaagctgttgaatatgcacag
acagccatggccatcagcatcagctttgatgaccagctgaatgagcgagtgtcctatcac
aggctggccactgtgtatcactgccttggacagtgtgagctggctgaacactattacctg
aaagcattgtccctctgctcttctccgctggaatttgatgaagaaactctgtattacgtg
aaagtgtatcaaacacttggggacatgctattctatgaattaaaggacccccacgatgct
gcaggatattatcacctggctcttgcggcagctatggacctgggcaacaagaagtctcag
ctgacgctttgcactcgacttgccaccatctaccacaacttcctggtcaacagggagctg
tctctcttcttctatcagaaggccagagtctttgctgcagacctgaatgtccgaaggatc
aacctgtcaccagaccagtattaccagaacacagccaagacacagctgaaaacatttgtc
taa
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