Polyodon spathula (Mississippi paddlefish): 121330460
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Entry
121330460 CDS
T07273
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121330460
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
121330460
3'-5' decay
Other 3'-5' decay factors
121330460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
zf-CCCH
ResIII
Mov-10_helical
PhoH
UvrD-helicase
PAM2
AAA_22
AAA_16
AroM
zf_CCCH_4
T2SSE
MOV-10_Ig-like
TPR_1
zf-CCCH_4
AAA_5
MobB
Motif
Other DBs
NCBI-GeneID:
121330460
NCBI-ProteinID:
XP_041132925
LinkDB
All DBs
Position
18:4555921..4599081
Genome browser
AA seq
1826 aa
AA seq
DB search
MGERRPEELCAQACEHLCCQEYQLALLCCDEAVAALPNISAFPTSTLSDEAIWLQASLYR
ISALLQLKKYSEAEEDCKSVLCIHEVLGDGLLRDVLVTMLLEGRLKAVYHALYNCEGVDC
VNGESMQTFRRLLLLLTESQVSSNAARVSPEPVNQGIRLGHRWKYRPPPRGVLGLDEYTI
CCRFLQYGSCRYGVLCLFAHSHGELVEWRERHVYRRLQDQQTREELQHCGSYGENLIEKW
ISNPSPDKVVSGSVDGVTVDCVPELNQVAKDKKCTLSWMLLLNCNPPRLLHRVALLSDLH
RSHFSISSVAAGCSDSLHPYSISDQCQEWSRDLSGQNRIKEHVYQVTVRFCTEVFGNFQQ
TVVFDFGTEPVLMQTVSAAVSSDEDVEAMFHRQQQSLLLSQRWDPTCKHIAVVEFQPREL
SDLDQSLLLNYEIPAAADQLFTRSVLDKSLNMHNYYSRFHDLLYIEENAQSKEVSKFNIQ
ASLHIVSGSSVPGHPGSARQLLNGQLFAILNLSGTVITRDTAAGRLVMDTVTSVLLMPVG
RRKGPCPVPGIKEKVYEALLEDRSREYLLLRLAKECCEDLKLQPDKDLLVELQFQLNRLP
LCEMHYALDTFQDCSLLFPDLSTVVLPPPLNSDDGLEMRLNPRQREAVQAIAAPLSLRLP
PLIITGPSGTGKTFTLTQAVKLLLRDPKYRILLCTHSEHAADVFVKDHLNFHDGPGLPEG
WLLRIHNKNKPVKSVLPAVQRCSLISRNRASFLLPTKEDVVRSRVVVTTVSLSKHLTQLG
LSTGYFTHILLDEASYATECESVLALALADESTRVVLAGDPAQLAPVVYSEFAWERSLHV
SLIERLSQFYPPDSCCRIELSAHYRSQETIINLASELFYGGDLRAASKQPAHKDFFPLSF
FAAWGMDKNCYSYYNFAEVLEIAEQVEELHKKWPVAWGKLDENSIGVVTPYASQAVCIRA
ELRKRKLQDVTVEQIFNVQGRHFRVLFLSTVRTRNTYKEPSAVVKRKDQQQEETAEDLEY
GFLSSSRMLSTVLPRAQSLLAVVGDPVALCTIGKCRKIWERIISLCHEHGSLHGVALHEI
HTQLDNLELSRSCVLNPLAPEFIPRTLLHPAFSRRLQASFPRLGTRRPQFHRFKPPGQAE
VYGHNSPAGLVGSPVCSFQFPSGRHSVFGKSASPLQRSEPLGRNNIVCIPPYRSRFVMPV
PVPCSGYQNRLPLDPRIMACQAAVAYNINLLQNQGRLSPGPFVSGPLSPHQTYQSSIDGS
VEHSKTGREEMIPGFETVKLWKENEMKEKFLANLDSLGGGPFWLSEGQMDRSLTPKFGHS
AKPYFNSSFSDVKSHHSLGPQGLHSPSRFPGNPSMDSLPYSLDRTPLPFASSPEPCRSPL
LGRMEHIRRSPSPAPLPPHLSPGLSSARVTVPQGSPQANLQNGTHINSAMRENVQSSDKC
ISKFSQWMEQCGDLVSDHPNHNHHHHSVPQSLNMHTPLIQNHDVFRLSQQDSNHVNSYHG
DPKLPVHESFEQHAPWNDPRTTSQSTETSPKAKLFPYCSSSTRSLSPLPSPMCYEQSLKR
ISHFGKLEHGSSPYTPDHKQKLFHFPSYPLPEFGSTIHPSSPRLPSASVSSVSPVSPRVL
LQLPPNAHNVVTPIKAGLGSTQHSDPHCHHERDFYASPKQFQRESEIDVRTMGRPLYQRG
APSTLQESPSSQVSQEPSPFCSPDLLSPASTGGQRAVEEAEDSAFSPTESGEGQAALHTQ
DCAEYNRHYTPSSQQAHPDCLEGNEQSYLEENKMAASYASVLRAPPPSSPGPSPELPKKA
NDPLTLLQDLSKRSGHNDSGFYSYFQ
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagcgaaggcccgaagaattgtgtgcccaggcatgtgagcatctgtgttgccaa
gaataccagctagccctgctctgctgtgatgaggcagtggctgcgttgcccaacatctca
gcattccccacctccaccctttcagatgaggctatctggcttcaggcatcgctctacagg
atctccgctctccttcagctgaaaaagtatagtgaagctgaagaagactgtaaaagtgtt
ttatgcattcatgaggtccttggtgacggtttgctgcgagatgtgttggtgactatgttg
ttggaagggagattgaaggcggtgtatcatgcattgtacaactgtgaaggtgtagactgt
gtgaatggagaatccatgcaaacctttagacggctgctgctactgctgacagaatcccag
gtttcaagtaatgccgctagagtttcaccagaacctgtgaatcaaggtattcgacttggt
catcggtggaagtacagacccccacctcgaggagttttagggttagatgaatatacaata
tgctgcaggtttctgcagtatggctcgtgccgctatggtgtcctgtgtctctttgcacac
tctcacggtgagctagtggagtggcgggagcgccatgtttaccgcaggctgcaggaccag
cagaccagggaggagctgcagcactgtgggagctatggggaaaacctaattgagaagtgg
atcagcaaccccagccctgacaaagtggtgagtggaagtgtggacggtgtgacagtggac
tgtgtccctgagctcaaccaggttgcaaaggataaaaagtgcacccttagctggatgctg
ctattaaactgtaaccctccccgtttgctgcaccgcgtggccttgctcagcgacctgcac
cgctctcacttcagcatctcgtcggtggcagcgggctgctctgacagtctgcacccctac
tccatctcggaccagtgccaggagtggagccgggacctgagcggccagaaccgcatcaaa
gagcacgtctaccaggtcactgtgcgcttctgcacggaggtcttcgggaacttccagcaa
accgtggtgtttgacttcgggaccgagccggtgctgatgcagaccgtttctgcagctgtg
tcctcggatgaagacgtagaagcgatgtttcaccggcagcagcagtctcttctgctgtcc
cagcgatgggacccaacctgcaaacacattgctgtggtggagttccagcctcgggagctc
tcagaccttgaccagtccctgctgctgaactacgagatccctgccgctgcagaccagctg
ttcacacgctctgtgcttgacaaatccctcaacatgcacaactactactcacgcttccac
gacctgctgtacatagaggagaacgcacagagcaaggaagtcagcaagtttaatatccaa
gccagtttgcacattgtgagcggctcttctgtgccgggtcaccctggcagtgccaggcag
ctcctgaatgggcagctgtttgccatcttgaatctgagtggcactgtgatcaccagggac
acggcagcgggaaggctggtgatggacacggtgacgagtgtgctgctgatgcccgtgggt
cgaaggaaggggccctgccctgtcccgggcatcaaggagaaggtgtatgaagccctgctg
gaggaccgcagccgagaatacctgctgctgcggctggcaaaggagtgctgtgaggacctg
aaactgcaaccagacaaggacctgctggtagagctgcagtttcaactgaaccgtttgcca
ctctgtgagatgcactatgcgctagatactttccaggactgcagcctgctttttcccgat
ctatccactgtcgttttaccacctcccttaaacagtgatgacggtttagaaatgaggctc
aacccacgacagagagaagctgttcaggccattgccgctccactgtccctgagactaccc
cctttaataatcacaggaccatcaggcactgggaagaccttcacattgactcaggctgtc
aagttactgctgagggaccccaaatacaggattctcctgtgtacacactcagaacatgct
gctgacgtctttgtaaaagatcatctaaacttccatgatggtcctgggctcccagaagga
tggctgttgagaatccacaacaagaacaaaccagtgaaatctgtacttcccgcagtgcag
cgatgcagtctgatctctcgcaatcgtgcgtccttcctactgcccacaaaggaggacgtt
gtaaggagccgtgtggtggtaacgacagtcagcctgtctaaacatctcacccagcttggc
cttagcactggttatttcacacacatcttgctggatgaagcttcttatgccactgagtgc
gagtcagttctggctttagcactggctgatgaatccacgcgggttgtgctggctggagac
cctgctcagctagccccagttgtgtacagcgagtttgcctgggagcgaagcctccatgtc
tccttgatagagcggctgtctcaattctacccacctgacagctgctgcaggatagaatta
tctgctcactaccgatcacaggagactatcataaatcttgcctctgagctcttttatgga
ggagatctgagagcagctagtaaacagccagcccacaaagacttctttccactctctttc
tttgctgcttggggaatggacaagaactgctacagctactacaactttgcagaggttttg
gaaatagctgagcaggtagaagagctccataaaaagtggccagtagcctggggcaagttg
gatgagaacagcatcggtgtggtgactccatacgccagccaggcagtctgtatcagagcc
gagctgcgcaaacgcaagctgcaggacgtaaccgtggagcaaatattcaacgttcaaggg
cgtcacttcagggtgctgtttctgagtacagtgcggacgaggaacacctacaaggagccc
tcggcggtggtgaagcggaaggaccagcagcaggaggagacggcagaggacctggagtac
ggcttcctgtccagctccaggatgctgagcaccgtgctgcctcgcgctcagtctctgctg
gctgtggtgggagaccccgtggcactctgcaccattggaaaatgccggaaaatctgggag
cggatcatctcgctgtgccacgaacacggcagcctgcacggagtggcgctgcatgagatt
cacacccagctcgataacctggagctgagcaggagctgcgtgctgaaccccctcgcaccc
gagttcatcccacggactctgctgcacccagccttctcccgcagactgcaggcgtccttt
ccaaggctcggcactagaaggcctcaattccaccgcttcaagcccccaggacaagcagag
gtttatggacacaacagccctgcggggcttgtcggcagcccggtttgctcctttcagttt
ccttctgggcgccactccgtctttgggaaatcagcaagccccctgcagagaagtgaaccc
ctgggcaggaacaacattgtgtgcatccctccttacaggagccgcttcgtcatgccagtg
cctgtgccctgctctggttaccagaaccggttaccactagacccacggatcatggcctgt
caggcggctgtggcctataatatcaacctgctgcaaaaccagggccgtctctctcctgga
cccttcgtctctggaccactctctcctcaccagacataccagtcatcaatagatggcagt
gtggaacacagcaaaacagggcgagaagaaatgattccaggttttgagactgtgaagctc
tggaaggaaaacgaaatgaaagaaaagtttttagcaaatctggactctctaggtggggga
cccttctggctgtcggagggtcagatggacagaagcttgactccgaagtttggccacagc
gccaagccatatttcaacagctccttctccgacgtgaagtctcaccacagcctcggtccg
cagggtctccacagccccagcagattccctggaaaccccagcatggacagcctcccctac
agcctggacaggacccccctgccctttgcctcctcccctgagccctgccgctcgcccttg
ctgggccgcatggagcacataaggagaagcccctccccagcacccctgccacctcacctc
tctccaggactgagcagcgccagggtcaccgtgccacaagggagcccccaggcgaacctg
cagaacgggacacacataaactctgcaatgagggagaatgtgcaaagttctgacaaatgc
atctccaagttcagccagtggatggagcagtgtggtgacctggtcagtgaccatcctaat
cataatcaccatcatcatagtgttcctcagtctctgaacatgcacacccctctcatccag
aaccatgacgtcttccggctctcccagcaggattcaaatcatgtcaacagctatcacggg
gatcccaagttacctgtgcacgagagttttgaacagcatgctccttggaatgaccccaga
accacgtcacaatctacagagacctcccccaaggccaagttgttcccgtactgctcctca
tcgacccggtccctgtctccgctcccctctccaatgtgctacgagcagagcctcaagcgc
atctcccacttcggcaagctcgaacacgggtcatccccgtacacaccggatcacaagcag
aaactctttcacttccccagctacccgctgcccgaatttggttcaactatccaccccagc
tctccccgcctcccctccgcctccgtgtcctctgtctctccagtctccccacgtgtgctg
ctgcagctgcccccgaacgctcacaatgtggtcacacccatcaaagccggcctgggatca
acacagcacagtgacccacactgccatcatgagagagacttctacgccagcccaaagcag
tttcagagggaatcggagattgacgtccggacaatgggccggccgctgtaccagcgaggc
gctccatctaccttgcaggagtctccctcttcccaggtcagccaggagcccagccccttc
tgtagcccggacctgctctcacccgcctccacggggggccagcgggctgtggaagaggcc
gaggacagtgcattcagccccactgagagcggcgaaggccaggcagctctgcatactcag
gactgtgcagagtacaacaggcattacacaccctccagccaacaagcgcaccctgactgc
ctggaaggcaatgagcagtcatacctagaagaaaacaagatggctgcctcttatgccagt
gttctccgggccccgcccccgtccagccctggcccctcccccgaactgccaaagaaggca
aacgaccctctgaccctcctgcaggacctgagcaagcgctctggccacaatgacagcggc
ttctactcatacttccagtga
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