Polyodon spathula (Mississippi paddlefish): 121330461
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Entry
121330461 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6-like isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121330461
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121330461
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
U-box type E3
121330461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-CCHC
zf-RING_UBOX
zf-RING_5
zf-C3HC4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
121330461
NCBI-ProteinID:
XP_041132926
LinkDB
All DBs
Position
18:complement(4535638..4555143)
Genome browser
AA seq
1806 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLNITLCDLKKQIMGRERLKAVDCDLQITNAQTEEEYTDD
GALIPKNSSVIIRRIPIGGVKTTSKTYVIDRTESSGGSSKAIDDSAASITLAQLSKTANL
AEANASEDDKIRAMMSQSSHDYDPVHYMKKLFGPPPPNYTCFRCEKTGHYIKNCPTNGDK
TFEAGPRIKKSTGIPRSFMMEVDDPNMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLP
QEQSSSSEEEDPVPDELLCLICKDIMNDAVVIPCCGNSYCDDCIRTFLLESDEHMCPTCN
QTDVSPDCLIANKFLRQAVNNFKNETGYSKRLRKGQALQTAPMQGQSRPQVQRSVQPAAR
PTSSRQQDPLMANIPPVAAAVPPPIVPAAIPAPVLHQTQTSAPVQPAAPTVQVNLVTSSP
ASEVSMSVPSPQPQVKHEEPASVKDPEKIATPVTSVMISADTSITMPVPKGYQVPVLGQP
HSVGHSIPTTGHPMRTNPIRPGGNRQGWDISNRGRPQSDRPLRTQTTTLPSMAPVYVPPP
SHFAPLSHTLPLPPGVSLPQFPPLFQPPTAGYAIPPPLFPPVSTTAAAQWVSPVTTVAQG
SAIPTIPQAPPLSREEFYRQQRRLKEDSNCRFVAREKSKLDEFTNDFAKELLEYRKIQKE
RRRSYSRSKSPYSGSSFSGSSYSYSKSRSRSSRSRSYSRSGSRSHSRSYSRSPVYTRRGG
GGRSRSYRSRSRSHGYHRSRSRSPAYRGGGGGGGGGGGGAGGGGGGGGVGGSSSRGYRSR
SRSPGHQGHTPSKRPAPLLQPEGDREYFNRYREPPPYDAKACYGRSVDQRDPFERERYRE
WERKYREWYNKFYTPPGNQPRPRPPPSNREHFTPERFGPPVVRRDNSPYSRSRREEYPPS
GQSQRVRNVPGNYPDKFVYKEGHGSSKECRKSKEKEAGNPPADGKGIKHKKHRKKRKGEE
NELFPTVGSLDGSRKPTGSEEGKGDSILMPPCRDDATPVRDEPMESTSVPYKAVTEKDTR
EKVKAKGEKLKRKPESNAPKKDSLLKTCKPSREKQVDAENEKSSRVEPPMKKPKEDSSQK
TEASKQHVSQKEDKAPLSRKGQQKPAKHHQDPKVVKEEKTKERKEYVKETSKHDNLPSKE
EKPKKDKIEEKSKKTSEVKQEKRKRKEEKHLEKDLEMPSIKSPRIEIVEVAKQSPKPKPE
PEKYPEKTIAKPVVEKADKEENIVPVRKIKINRETGRKILSRESIAPLEEMTDGAEKIRP
ERMKTKIRRKMQAADETASTLVDYTSTSSTGGSPVRRLEEKLDIKKTVVKTMEEYNNDSS
TPAEDEIVLIQVPLSKWEKEDYESEDDDAKSALVAGSGKSATVENVAVKSSSEMKQTEED
SPQTEKTPKVAKEPDGEELQPESKVSKTTVPSEKEKVCEKEKVCEKEKVCEKEKVREKER
PAVDKETMEKRKAPDSQSDKERNLERTSDQGSEKSVSSFSSSKDRTVEKSNAGSRASLVK
GNSTAAGSNRDYPSSKRKEEKLKDSSKRRDSPSLTKEHAPSQKSRDRDVYVDIPRKVATE
TKRTEHSPGRDKKTHTDYKNAPDSKRAVVDDHRSDKMPSKDSNRHATSETRSIKERDHGG
YKSHRTESPDVRTDTHRTVGRNEREHNKNKPLLVRSTRLSSDLARETDEAAFVPDYSESD
GDSEASDHNTKPDRVKEKGGVAAPLPASLSPTRSQRSASVSHSQSPFESQPHSRSSSASS
AGSQDSKKKKKKDKKHKKHKKHKKHKKHAGNESDPENKGQKHKNKKKKSKKSKDKEKDDQ
KPKVSV
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgtgtacattataaattttcctctaaactgaactatgacacggtcacttttgat
ggcctcaacatcacgttatgtgacctgaaaaagcagatcatgggaagggagaggctgaag
gcggtggattgcgatcttcagattaccaatgcgcagactgaagaagagtacactgatgat
ggtgcccttattcccaaaaattcttctgtcattattcgaaggattcctattggaggagtt
aagacaactagcaaaacatatgtcattgatcgtactgaatcttcaggtggatcctcaaaa
gccattgatgattctgctgcttctattacactggcccagctatcgaagaccgccaatttg
gcagaagctaatgcctccgaagacgataaaattagagctatgatgtcgcagtccagccat
gattatgatccagttcattacatgaagaaactttttgggccgccaccaccgaattacact
tgctttcgctgtgagaaaactggacactatattaaaaactgcccaaccaatggggacaaa
acttttgaagcaggtccaaggataaaaaagagcactggtattcctcgaagcttcatgatg
gaggttgatgacccgaatatgaaaggagccatgcttacaaacactggaaaatacgctatt
ccaactattgatgccgaggcgtatgcaatcggaaaaaaggagaagccaccttttctacca
caggagcagtcttcatcttctgaggaggaggaccctgtccctgatgagctgctgtgtctg
atttgcaaggatatcatgaatgatgcagttgtaattccatgctgtggaaacagttactgt
gatgattgtattagaacatttcttctagagtcagatgaacatatgtgtcctacatgcaat
cagacagatgtttcacctgattgcttgattgccaataaatttttaagacaggctgtaaac
aattttaaaaatgaaactggctactccaaaaggcttcgtaagggacaggctctgcaaact
gcaccgatgcagggccagtccagaccacaagtgcagcgttctgtccagccagctgcaaga
ccgacatcctccaggcagcaggatcctctcatggccaatatccctcctgttgctgctgct
gttcctccccccatcgttcctgctgccataccggctccggtgctgcaccagacacagacc
tctgcccctgttcaacctgctgcaccaactgtccaggtgaatctggtcaccagtagccct
gcttcagaagtgtccatgtctgtgccctctccacagccacaagtgaagcatgaagaacct
gcttcagtaaaagatcctgagaaaattgcaactcctgtcacatctgtgatgatttctgca
gatacatctataactatgcctgttccaaagggttaccaggttcctgtgcttggtcaacct
cattcagttggtcactctatacctacaacaggtcatccaatgagaaccaaccctattcga
cctggaggcaatcgacaaggctgggatatatcaaacagaggtcgaccacagagtgaccgg
cctctcagaacacaaactactacattgccatccatggctcctgtttatgtgcctccgccg
tcacacttcgctcctctctcccacaccttgcctcttccacctggagtatcacttcctcag
ttcccgcctctgtttcagcctcctactgctggatatgccataccgcctccattgttccct
ccagtctcaacaactgctgcagctcaatgggtttcccctgtaactactgtggcacagggc
agtgccattcctaccatcccacaggcacccccactatctagggaagagttctacaggcaa
cagcgtagactgaaagaggattccaactgtcgcttcgttgctagggagaagtctaagctt
gatgagtttaccaatgactttgctaaagaattactggaatacagaaaaatccaaaaggaa
aggaggcgatcctattcaagatcaaagtctccatatagtggatcatcgttcagtggcagc
tcctactcttactcaaaatccagatcacgatcctcccggtctcgatcctactcgaggtct
ggcagccgatctcattctcgctcctactccagatctccagtgtacaccagaagaggtggg
ggaggcaggagccgtagttaccgctccaggtcgcgatcacatggatatcaccgctcccgg
tctaggtcccctgcttatcgaggaggaggaggaggaggaggaggaggaggtggcggtgct
ggtggtggtggtggaggaggaggcgttggcggcagcagcagcagagggtatcgctcccgt
tcaagatctccaggtcaccagggtcatactcccagtaaacgacctgcaccactgctacag
cctgaaggtgacagagagtacttcaacagatatagagagccgcccccctatgatgccaag
gcttgctatggtcgttctgtggaccagagagaccctttcgagagggaaagatacagggag
tgggaaaggaagtatcgagagtggtataacaaattctacaccccccctggcaatcagcca
aggcctaggcctcccccatctaatagggaacatttcactccagaacggtttggcccacca
gtggtcagacgggacaattcaccatacagtcgaagtcgcagagaggaataccctccatct
gggcagagccagagagttcgtaatgtgcctggaaactatccagataagtttgtctataaa
gaaggacacggaagcagcaaagagtgtagaaaatctaaggaaaaagaagcaggtaatcct
ccagctgatggaaagggtattaaacacaaaaagcacaggaaaaagaggaaaggtgaagag
aatgaactgttcccaactgtaggttctctagatggctccagaaagcccactggcagtgaa
gagggtaagggggattctatactgatgcctccatgccgagatgatgccacccctgtcaga
gacgaacccatggaaagtacatctgtcccctataaagctgtgactgagaaagacacaagg
gagaaggtgaaagcaaagggtgaaaaactaaaacgcaagccagaaagcaatgccccgaag
aaagactccttgttgaagacctgcaagccgtccagagaaaagcaggttgatgcagaaaat
gaaaagtcttcacgtgtggagcccccaatgaaaaaacctaaagaagattcttctcagaag
actgaagcttcaaagcagcacgtgtcccagaaagaggacaaggctcctctgtcccgcaaa
ggacagcagaaacctgctaaacaccatcaagaccctaaagtggttaaagaggagaagacc
aaggagaggaaagagtatgtcaaggagacatctaaacacgacaatctcccaagcaaggag
gagaaaccaaagaaagataaaattgaggagaaatctaaaaaaacctctgaggttaaacaa
gagaaaaggaaaagaaaagaagaaaaacatttagaaaaagatcttgaaatgccttctatt
aagtcccctagaattgaaattgtagaagtggcaaagcaatcgcccaaacctaaacctgag
cctgagaaatatccagaaaagacaatcgccaagcctgtagtggaaaaggcggataaagaa
gagaacattgttccagtgaggaagataaaaatcaaccgtgagactggcagaaagattcta
agcagggaaagcatagctccattggaagaaatgacagatggagcagaaaagattaggcca
gaaagaatgaaaactaaaatacgaagaaaaatgcaagctgcagatgaaacagcttctacc
ttggtagattataccagcactagttctacaggaggcagcccagttagaagactagaagaa
aaactggacattaaaaagacagtggtgaagaccatggaagaatacaacaatgacagctca
actccagcagaagatgaaattgtgctgatccaagttcctctttcaaagtgggagaaagaa
gactatgaatcagaagacgatgatgctaagtcagcgctggttgctggaagtggaaaatct
gctactgtggaaaatgtcgcagtaaaatcttccagtgagatgaaacagaccgaagaggac
tctccacagactgagaaaacacccaaagtggccaaggaacctgacggggaggaactgcaa
cctgaatccaaagtttcgaagactactgtgccaagtgaaaaggagaaggtctgcgaaaag
gagaaggtctgcgaaaaggagaaggtctgcgaaaaggagaaggtcagagaaaaagagcgt
ccagctgtagacaaggagaccatggaaaagaggaaagctcccgattcccagtcagacaaa
gaaagaaacctggagaggaccagtgatcaagggagtgaaaaaagtgtctcctcgttctcc
tcttctaaagacagaaccgtagaaaaatctaatgctggttcccgagcatctttagttaaa
ggcaattcaacagctgctggaagtaaccgagattaccccagctctaagcgtaaagaagaa
aaactaaaagactccagcaagaggagggactccccttccctaactaaagaacatgctcca
agtcaaaagagcagagatagggatgtgtatgttgatattccaaggaaagtcgcaacagaa
acaaagagaactgagcacagccctggaagggacaaaaagacacatacagattataaaaat
gcccccgattcaaagcgtgcagtagtggatgaccatcgatcagacaaaatgcctagtaaa
gattcaaacagacacgcaacctcagagacgagaagcatcaaggaaagggatcatggtggt
tacaagtcacataggactgaatccccagatgttaggactgacacacacagaactgttggc
cgaaatgagcgtgagcacaataagaacaagccactgctcgtccgatctactcggctgtct
tctgacttggccagagaaactgatgaggctgcttttgtgcctgactacagcgagagcgac
ggtgacagtgaagcctctgaccataatactaagcctgatcgagttaaagagaaggggggg
gtggcagcccccctacccgccagtttgagcccaacccggagccagaggagtgcaagtgtg
agccacagccaaagcccctttgagagccagcctcacagccgtagcagcagtgccagctct
gccggcagccaggacagcaagaagaagaagaaaaaggacaagaagcacaaaaagcacaag
aaacacaaaaaacacaagaagcacgccggcaacgaatctgaccccgaaaacaaaggccaa
aaacacaagaataagaaaaagaaatccaagaagagcaaggacaaggaaaaggatgaccaa
aaaccaaaagtatctgtatga
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integrated database retrieval system
