Polyodon spathula (Mississippi paddlefish): 121330475
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Entry
121330475 CDS
T07273
Symbol
colgalt2b
Name
(RefSeq) LOW QUALITY PROTEIN: procollagen galactosyltransferase 2
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa00310
Lysine degradation
pspa00514
Other types of O-glycan biosynthesis
pspa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
121330475 (colgalt2b)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
121330475 (colgalt2b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pspa01003
]
121330475 (colgalt2b)
Enzymes [BR:
pspa01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
121330475 (colgalt2b)
Glycosyltransferases [BR:
pspa01003
]
O-Glycan biosynthesis
O-linked Gal type
121330475 (colgalt2b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Aminotran_4
Motif
Other DBs
NCBI-GeneID:
121330475
NCBI-ProteinID:
XP_041132952
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All DBs
Position
18:complement(36197266..36210771)
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AA seq
503 aa
AA seq
DB search
MEEPRSYTDEMGPKHWTSSRFNHIMKLRQAALKAARQRWADYILFADADNFLTNRQVLNL
MIAENRTIVAPMLESRTLYSNFWCGITPQGFYKRTPDYLPIREWKKLGCFAVPMVHSTFL
IHLQREATRSLAFHPPHPDYTWAFDDIIVFAFSVRQAGIQMYLCNREHYGYLTIPLKAQQ
TLQDEVDSFVHVQIEAMIDRPPIEPSKYLHLPPKRLDRMGFDEIFLINLKRRRDRRERTV
RSLEAQGINATVTDAVDGKALNTSQLKALGIEMLPGYEDPYSRRVLTRGEIGCFLSHYHT
WKEXSKAYXSSVLVLEDDVRFEPQFKKRMMLMMANIKGAQLDWDLIYVGRKRMQLERPEQ
AVAGVPNLVEADYSYWTLGYALSQQGALKLLRADPLGKMLPVDEFLPVMFNKHPVKKYME
HFEPRELLAFSAEPLLLFPTHYTGDAGYVSDTETSIIWDNERVETDWDRQHSQRSRKARQ
QGHISSAGQNRVDSAGATARDEL
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggaggagccacggtcctacacagatgagatgggtcccaagcactggacgagctcacgg
ttcaaccacatcatgaagctgagacaagcggcactgaaggcagcacgacagcgctgggca
gactacatactgtttgcagatgctgataatttcctgaccaaccggcaagtcctgaacctg
atgattgcagaaaacaggaccatcgtggcgccgatgctggagtctcgcaccctctactcc
aacttctggtgtgggatcaccccccagggcttctacaagcgcaccccggactacctcccg
atccgggagtggaagaagctgggctgcttcgcggtgccgatggtccactccaccttcctg
atccacctgcagagagaggccacgcgcagcctggccttccacccgccccaccccgactac
acctgggccttcgatgacatcatcgtcttcgcattctctgtgcggcaagcaggaatccag
atgtacctctgtaacagagagcactatgggtacctgaccatccctctgaaggcccagcag
accctgcaggatgaagtggacagctttgtccacgtccagattgaggctatgatcgaccgg
cctcccattgagccctcgaagtacctacacctcccccccaagagactggaccggatggga
ttcgacgagatcttcctgatcaatctgaagcgccgcagggaccggcgggagaggactgtg
cgcagcctggaggctcaggggatcaacgccactgtcactgacgcagtggacgggaaagct
ctcaacacgtcccagctgaaggccctggggatcgagatgctgccggggtatgaggacccc
tactcccggagggtgctgactcggggggagatcggctgcttcctgagccactaccacacc
tggaaggagtaaagcaaagcatattaaagcagtgtgctggtcctggaggatgatgtgaga
ttcgaaccccagttcaagaagaggatgatgttaatgatggcaaacattaagggggcccag
ctggactgggatctgatctatgtgggacggaagcgcatgcagctggagcgtcctgagcag
gctgtggcgggtgtgccgaacctggtagaggcagattactcatactggactctgggctac
gcactctcccagcagggggcgctgaagctgctgcgggcggatcccttggggaagatgctg
cccgtcgacgagttcctgcccgtcatgttcaacaagcaccctgttaagaagtacatggag
cactttgagccgagggagctgctggcattctccgcagagcccctgctgctgttccccact
cactacacgggggacgcggggtacgtgagcgacactgagacctccattatctgggacaac
gagagggtggagacggactgggaccggcagcactctcagcgctcgcgcaaggcccggcag
cagggccacatcagcagcgcggggcagaaccgcgtggacagcgcaggggccacggcgagg
gatgagctgtga
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