Polyodon spathula (Mississippi paddlefish): 121330476
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Entry
121330476 CDS
T07273
Name
(RefSeq) retinoic acid-induced protein 1-like
KO
K19749
retinoic acid-induced protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121330476
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
121330476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H_2
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
121330476
NCBI-ProteinID:
XP_041132953
LinkDB
All DBs
Position
18:complement(5145428..5171358)
Genome browser
AA seq
1802 aa
AA seq
DB search
MQSFRERSGFHGNQQCYQQEAHELSRLENYRHHQSQTRQGYEAHALAAAKDCYSQQVYHG
YSNSTGADKQYKGAKIPTQHLQNSSSLTGYSNHLSNAYSAQYVSEGHLQQKWEDSSHLPQ
YEQELLGRLESPTSGGQYLEQSLHSISRSQCSHSTHQNPPVYTTHHQQKVQQDTSTSPMT
YTQGSLHFPQHSQSLSSSTPSYTVVDKSNQTSRCYKNYVMPSNSQYNRQLGSGTIKQGGY
RAQTNYSYQSTPARVGYEQQASLQAMPNTQDNLSKYQHYNQPQQNYCLTDISVRSPEQYY
QNCSPSSSHSPARSVGRSPSYSSTPSPLMVNPENFQYNQPPITTGASSSTGIRDQSLVMP
SHTHSSNLNPQPTSYAGSLKDRFSEKLLSNPSLWSLNALTSQVENISNNVQQLLLSEALV
SNKKGGKRTPKKTEDCQGQLRALEDGAEAQLATPASEPFSTPQSVHTEMQEGEYSSSSEE
QLESIYYMCSQNSPAQTTNNSQLILETVSSDSVTSPGNMSAKSNDSLHSGEPGEHYTTLL
KNLGKDNSPKSQSASSPLKQEENSATAIIKENFEESAWPDKTKAEKEEIKEPVVTDDEKG
DICLLDQGGWLEEEKYPMFFHKLSKALISKSYPNSMGQKTYQDIQYVTDEREDCEKPSSP
AEFHCGTAAGSDVEAEMYNSDFPADLNVAGKAVQFNWSNDLVQDQYLTMKEEVSNYSHFN
SRVEVFEEKLSAAENQEMYAEECSVESSESNKPAVIKDKHGSLSPEETFKSQVWTQESAE
CSSPEEDQDNGKQIPESKETFLESIVQEAAFPSTERSVMYDVSPQHPSKTIVLVTPDGTT
PLSQTSDNSDLEDSMMLAHDIPLLATQSVIHSSWADTPPSSKKWDEEIELGIDCLNEVSE
SFESESLSTSAKLNELNRKHDEEKSNQPGRLMHTSVRIRRLSSLVGEGLPTAPQAINMSS
SKNTASADQTEATSNNLSSQIPKRFADNPPSRMCTRSFTAQGIPKACVHIKRQSAPSLPK
TASSKDLLCHPTDVFSKIKCFKHKGLKSFEGCIKGKRSLSECCPNGEDQDVAQSILPLLK
EQRPMVLRSRKQKQEKPLKEKVKEKRIPNLLPRKLKTPHKQKAVFLKGKARASPKQNTAD
SHRKVVYRIKNKIEKPAENLLSALKRKSNGCSPIPVKRHRGVKQGKGEALPAPLNNKGVV
AKPPNKKSRSGAHFKTSLNSYLTKELPLIVSSVAPCIQAQYPAKTKYLPPRKGRGLKYEA
MVQKITSPGSKKHASSTYVENTVANPTTALQSHEENEQIKEAQQLKPRADAESQNVIVEL
EGSFVKSPPSKRRKLSVGQICVSRTQIASAFETEVNLVVGPRLAKQRAIKNNHEMHMKQR
RRRRKGIGSTVPEDNVVADQHSSTPLIASLPPETELATPTPVTVETSKCKRVNQRLSQPK
KKQVTYLDNKSRKNQKIVKKTGTVRRNRKLLNSVKTKRNGCRLKNRHKKQCAPIVEDKEP
EIRLKYVSYKPQKNENKPPQFCPYIHIDKSKELSSICNIVNRPEEECQLLQTRKNNSPRI
KNSVAVAKVMPNSSVMQQGPLINKNLIDRCLTCCLCRKPANYRELGDLCGPYYPEDSIPR
KTQSFKCKTELGENRVKTICSSVQSEATELETEKSSSSVVPGRPRWLDKLPGEHSGVRSK
FRDRCRKLHQFQGYNRKAVDAESNPLKEQDGSGPVSEHLELEIESKEHWVHEACVVWTNG
TFLVAGKLYGLQEAVLVASETNCLKCQESGATVGCCSKGCTQKFHYVCAKDMGKYFFDCW
SC
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccttcagagaaaggagtggtttccatggcaaccagcagtgctaccagcaggag
gcacatgaattatcacgccttgagaattacaggcatcatcagagccagacaagacagggc
tatgaggcgcatgctcttgcagcagcgaaggactgttacagccagcaagtctaccatggc
tacagcaacagcaccggtgcagataagcaatacaaaggagcaaaaatcccaacccagcat
ctgcaaaacagctcgtccttgactggctacagcaaccacctcagcaatgcgtattcagcc
cagtacgtaagcgagggacacctgcagcaaaagtgggaagactcctcccatttaccccag
tatgagcaggagctcttaggaaggctggaatctcccaccagtggtggtcagtaccttgag
cagagcttacactctatatccaggagccagtgctcccattctacccatcagaacccccca
gtttataccacccatcaccagcaaaaagtccaacaagacacctccacctcccctatgacc
tacacacaaggctccctccattttcctcagcactcccaatcgctctcctcctcaactcct
tcctatactgtggtggacaaatccaaccaaactagtcgttgctacaaaaactatgtcatg
ccttccaattcccaatacaacaggcaacttgggagtggcactatcaaacaaggtggctac
agagcccagactaattatagctaccagtcgactcctgccagagttggctatgaacagcaa
gcttccctgcaagcaatgcccaatacccaggacaacctttcaaagtaccaacattataac
caaccccagcagaactactgcctgacagacatctctgtgaggtctcccgagcagtactac
caaaactgcagtcccagttcaagccactccccggctagatctgttgggagatctccctct
tacagttccacaccttctcccttaatggtcaacccagagaacttccagtacaaccagcca
cccatcactacaggggcttcatcgtccactggcataagagaccagagtcttgtgatgccc
tctcacacccactcttccaatctcaaccctcaacccaccagttatgcaggatctctcaag
gacaggttttcagagaagcttctctccaaccccagcctttggagcctcaatgcactgact
tctcaagtcgagaacatttctaataacgtccaacagcttctgctttccgaagctcttgtc
tccaacaagaaaggtggaaaacggacccctaaaaaaacagaagactgtcaaggtcagctg
agagctctggaggatggggctgaggcacagctggccacacctgcgtctgaacctttcagc
acacctcagtcagtccacacagaaatgcaagagggagaatactcaagcagttctgaagag
caacttgagagtatctattacatgtgcagtcagaacagtccagcccagacaacaaacaat
tcacagcttatcctcgaaactgtatcttcagattctgtgacttcacctggcaatatgtca
gccaaatctaatgactctctgcacagtggtgaaccaggagaacattatacaaccttactg
aagaacctaggcaaagacaactctccaaagagccagtctgcctctagtcctctgaaacaa
gaggagaactctgccactgccattatcaaggagaactttgaagagtcagcttggcctgat
aagacaaaagcagaaaaggaagaaataaaggagcctgtagtcacagatgatgagaagggt
gacatctgtttgctagaccaaggaggctggctggaggaagagaaatacccaatgttcttt
cataaattaagcaaagcattaataagtaaaagctatcccaatagcatggggcagaaaaca
taccaggacatccagtatgtgacagatgagagggaagactgtgagaagccctcaagccct
gccgagtttcactgtgggacggctgcaggctctgatgtggaggctgaaatgtataattca
gactttcctgcagatttaaacgtcgcaggtaaagctgtgcagttcaactggagcaatgac
cttgtacaagaccaatatttaaccatgaaagaggaagtctccaattattcccactttaat
tccagagtcgaagtatttgaagaaaagctttcagcagctgagaaccaggagatgtatgct
gaggagtgctctgtcgagtcgtcagaatccaataaacctgctgtgataaaggacaagcat
ggctcactatcccctgaagagacatttaagagccaggtatggactcaggagtctgcagaa
tgcagtagtccagaagaagaccaggataatggaaagcagatcccagaatctaaagaaaca
tttttagagtcaatcgtccaagaggcagcctttcctagcactgaaagatcagtaatgtac
gatgtctcacctcaacatccttctaagacaatagttttagtgacccctgatggaacgaca
cctttgtcccagacaagtgacaacagtgatctagaggacagcatgatgcttgcccatgac
atacctcttttagccactcagtcagtgattcactcatcatgggctgatacacctccctct
tcaaaaaaatgggatgaagaaatagagcttggaattgactgtctaaatgaagtgtcggag
tcctttgaatcggagtcactgagtacatcagcaaagctcaatgaattaaacagaaaacac
gatgaggagaaaagcaaccaaccaggaagattaatgcacacaagtgttcgaattagaagg
ctttctagtctggtaggagaggggctgccaacggctccgcaagcgatcaatatgtcatct
agtaaaaatacagcttcagcagaccagacagaagcaactagcaacaatctgtctagtcag
atacctaaacgttttgcagacaacccaccatcaaggatgtgtactcggtctttcacagcg
cagggtatccccaaggcttgtgtgcatataaaaagacaatcagcccctagcctcccaaag
acagcttcctcaaaagaccttctttgtcaccctacagacgtgttttccaaaatcaagtgc
ttcaaacacaaaggcctaaagtcttttgaaggttgcattaagggcaaaaggagtttgagt
gagtgctgcccgaatggggaagaccaggatgttgcccagagtatactgccactgctaaaa
gagcaacgaccaatggtattgaggtcaagaaagcaaaagcaagagaagccactgaaagaa
aaagtcaaagaaaaaagaatacccaatctcctgcctaggaagcttaaaacaccacataag
cagaaggctgtctttctgaaaggtaaggcacgagcaagtcctaaacagaacacagctgac
tcccatcgaaaagtggtgtacagaataaaaaacaaaattgaaaagccagccgagaatctg
ttatccgccctcaagaggaagtccaacggctgctcacccatccctgtgaaacgacacaga
ggtgtgaaacaggggaaaggtgaggcactcccggccccattaaataacaaaggggtggtg
gcgaaacctcccaataagaaatcacggagtggagcccattttaaaacctctttaaacagt
taccttaccaaagaattgcctctcatagtctcaagtgttgccccttgcattcaggctcag
taccctgctaagactaaatatctacccccaaggaaaggcaggggccttaaatatgaagct
atggtgcagaagatcacatctccaggctccaagaagcatgcttctagcacttacgtagaa
aatacagtggctaatccaaccactgcattgcagagtcacgaagagaatgagcaaataaag
gaagcacagcagctgaaaccaagggctgatgcagaatcacagaatgtgattgtggaacta
gaaggaagctttgtcaaaagccctccttcaaaaagaaggaaactgtcagttggacagatc
tgtgtaagtaggacccaaattgcctcagcctttgaaacagaagtgaatttagttgttgga
ccaaggctagctaaacaaagggcaatcaaaaacaatcacgaaatgcacatgaaacaacgg
aggagaaggagaaaaggtattgggtcaacggttcctgaagacaatgttgtggcagaccag
cattcttcaacccctttgattgcatcacttcccccggaaacagaactggcaacacccaca
ccagtcactgtagaaacaagcaaatgtaagagggtcaatcaaaggttatctcagccgaaa
aagaagcaggtgacatatttagataacaagagtaggaaaaatcaaaagattgttaaaaaa
acagggacagtcagaaggaatagaaagcttttaaattcagttaagaccaagaggaatgga
tgcaggctcaagaaccgacataaaaaacaatgtgctccaatagtagaagacaaggaacct
gagatccgattaaaatatgtgtcgtacaagcctcagaaaaatgaaaacaaaccacctcag
ttctgtccttatattcacattgacaagtcaaaagagttgtcttctatatgtaacattgtt
aacaggcctgaagaagaatgtcagcttcttcagacaaggaaaaataactcaccaaggata
aagaactctgtagcagttgccaaggtgatgccgaactcttctgtcatgcagcaggggcct
ttgataaacaagaatctgattgacagatgtctaacttgctgcctgtgtagaaagcctgca
aattacagagagctgggagacctctgtgggccatactacccagaggacagcataccaaga
aaaacacaatcttttaagtgcaaaacagagttgggggagaatagggtgaaaacgatatgt
agctctgttcaaagtgaggccacagagctagaaactgagaagagcagcagtagtgttgtt
cctggaaggcccagatggctcgacaagttaccaggggagcacagcggtgtccgatcgaag
tttagggatagatgccgaaagttgcatcagtttcaggggtacaacaggaaagctgtggac
gcagagtcgaaccctctgaaagaacaggatggcagtgggccagtctcagagcatttggag
ctggagatagagtctaaagagcactgggtacatgaggcctgtgtagtatggactaatgga
acgttccttgtcgcgggcaagctgtatggacttcaggaagctgtgctggtggccagtgaa
acgaactgtttgaaatgccaggaatctggggccacagtaggctgttgttcgaagggatgc
acgcagaaatttcactacgtttgtgccaaagatatgggtaagtactttttcgactgctgg
agctgttaa
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integrated database retrieval system
