Polyodon spathula (Mississippi paddlefish): 121330823
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Entry
121330823 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase TRAF7-like isoform X1
KO
K10646
E3 ubiquitin-protein ligase TRAF7 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121330823
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121330823
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
121330823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
EIF3I
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML_2
NBCH_WD40
Beta-prop_IP5PC_F
WD40_like
Beta-prop_SPT8
Beta-prop_DCAF4
zf-RING_UBOX
zf-C3HC4
Beta-prop_EIPR1
Beta-prop_IFT140_2nd
zf-C3HC4_2
zf-TRAF
Sina_ZnF
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
WDR90_beta-prop_4th
DUF16
DUF1664
U-box
DUF4164
PKcGMP_CC
Motif
Other DBs
NCBI-GeneID:
121330823
NCBI-ProteinID:
XP_041133583
LinkDB
All DBs
Position
18:complement(4265228..4286196)
Genome browser
AA seq
675 aa
AA seq
DB search
MSSSKIPRCNRYFGGATAGVSVPATESNNGKHTRMETTFGPAFSTVTTVTKAEGTNTFKQ
HHRTPSCSSTMSYTPRDEDDVMPPIGTPRRSDSAISVRSLHSDSNMSLRSTYSLHEEEEE
AEPVVFAEQPSVKLCCQLCCVVFKDPVITTCGHTFCRRCALNSEKCPVDNAKLTVVVNNI
AVAEQIGELFIHCKCGCRPASSGKPAAFEVDPHGCPFTIKLSARKDHESSCDYRPVRCPN
NPNCPPLLKMNLEAHLKQCEHIKCPHSKYGCTFIGNQDTYETHLEMCKFEGLKEFLQQTD
DRFHEMQLALAQKDQDIAFLRSMLGKLSEKLDQLEKNLELKFDVLDENQSKLSEDLMEFR
RDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSTGDLLFSGS
SDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGNKLYSGSADCTIIVWDIQTLQKVNTI
RAHDNPVCTLVSSNNMLFSGSLKAIKVWDILGTELKLKKELTGLNHWVRALVASQNYLYS
GSYQTIKIWDIRTLECVHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTL
TGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGR
LFSGAVDSTVKVWTC
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaagtaagatccctcgctgcaacaggtactttggaggagcaacagcaggggtc
agtgtccctgccacagaaagcaacaacgggaagcatactagaatggagactactttcgga
cctgcattttcaacagttaccactgttactaaagctgaaggaacaaacactttcaaacag
catcacaggaccccttcttgctcaagcactatgagctacacacccagggacgaggatgat
gtcatgcctcccatcggcacaccacgcagatctgactctgcaatatcagtccgttccctg
cactcggattccaacatgtctctgcgctccacttattctttgcatgaagaggaggaggag
gcggagcctgtggtttttgctgaacagccctcagtgaaactctgctgtcagctctgctgt
gtggttttcaaggatcctgttataacaacttgcgggcacaccttctgtagaagatgcgcc
ttaaattctgagaagtgccccgtggacaatgcaaagctcacagtggtggtgaataacatc
gctgtggctgagcagattggggagctctttattcactgtaaatgtggctgccgacccgcc
tccagtggcaagccagcggcctttgaggtggacccgcatggctgccccttcaccatcaaa
ctcagtgccagaaaagaccatgaatcaagctgtgactataggccggttcgctgtcccaac
aaccctaactgcccccctctcctgaagatgaacctggaggcccacctcaaacagtgtgaa
cacatcaagtgcccccactccaaatatgggtgtacatttataggtaaccaggacacatat
gaaacgcacctagagatgtgcaagtttgagggtctgaaggagttcctccaacagacggac
gatcgtttccacgagatgcagttggcactggcacagaaggaccaggatatcgccttcctg
cgctccatgttgggcaaactctctgagaaactggaccagctggagaagaacctggagctc
aagtttgatgtgttggatgaaaaccaaagcaaactgagtgaggacctcatggagtttcgg
agagatgcatcaatgctcaatgatgagctttcccacatcaatgccaggttgaatatggga
atccttggatcctatgatcctcagcagatattcaagtgtaagggtacctttgttggtcac
caaggtcctgtttggtgcctttgtgtttactcaaccggggacctgttattcagcggctcc
tcagataaaacgattaaggtgtgggacacctgcactacatacaagtgccagaagaccctg
gagggacatgatgggatcgtgctggctctctgtattcaagggaacaagttgtacagtgga
tctgcagactgtactataattgtttgggatatacagactctacagaaagtgaacactatt
cgagcacatgacaaccccgtgtgcacgctggtttcatcaaacaacatgctcttcagtgga
tctctcaaagcgatcaaggtgtgggatatcctgggcaccgagctgaagctgaagaaggag
ttgaccggcctcaaccactgggtccgggcactggtcgcctctcagaactacctgtacagt
gggtcgtatcagacaatcaagatctgggatattcgcactctggaatgtgtccatgtgcta
cagacctcaggtgggagtgtctactccattgcagtgaccaatcaccacattgtctgtggc
acctatgaaaatctcatccacgtgtgggatattgaatcgaaggagcaggtacggactctg
actggccatgtgggcacggtgtatgctctggctgttatctccactccagatcaaaccaaa
gtgttcagtgcgtcctacgacagatctctcagggtgtggagtatggataatatgatctgt
acccagactctgctgaggcaccagggcagtgtgactgctctcgccgtgtccagaggacgc
ctgttctcgggggctgtcgacagcaccgtcaaggtctggacctgctaa
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