Polyodon spathula (Mississippi paddlefish): 121330823
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Entry
121330823 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase TRAF7-like isoform X1
KO
K10646
E3 ubiquitin-protein ligase TRAF7 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121330823
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121330823
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
121330823
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
DSE1_N
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML_2
NBCH_WD40
Beta-prop_Aladin
Beta-prop_IP5PC_F
Beta-prop_SPT8
ASA1
Beta-prop_WDR41
Beta-prop_DCAF4
WD40_like
zf-RING_UBOX
zf-C3HC4
Beta-prop_EIPR1
zf-C3HC4_2
zf-TRAF
Beta-prop_IFT140_2nd
PAC11
TRM82_WD
Sina_ZnF
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
Beta-prop_LRRK2
zf-C3HC4_4
CEP135_TSGA10_CC
zf-C3HC4_3
zf-RING_5
CRWN_N
PII1_coiled_coil
WDR90_beta-prop_4th
CCDC39
DUF16
CRWN_second_CC
Rod_CreS
U-box
DUF4164
PKcGMP_CC
Motif
Other DBs
NCBI-GeneID:
121330823
NCBI-ProteinID:
XP_041133583
LinkDB
All DBs
Position
18:complement(4265228..4286196)
Genome browser
AA seq
675 aa
AA seq
DB search
MSSSKIPRCNRYFGGATAGVSVPATESNNGKHTRMETTFGPAFSTVTTVTKAEGTNTFKQ
HHRTPSCSSTMSYTPRDEDDVMPPIGTPRRSDSAISVRSLHSDSNMSLRSTYSLHEEEEE
AEPVVFAEQPSVKLCCQLCCVVFKDPVITTCGHTFCRRCALNSEKCPVDNAKLTVVVNNI
AVAEQIGELFIHCKCGCRPASSGKPAAFEVDPHGCPFTIKLSARKDHESSCDYRPVRCPN
NPNCPPLLKMNLEAHLKQCEHIKCPHSKYGCTFIGNQDTYETHLEMCKFEGLKEFLQQTD
DRFHEMQLALAQKDQDIAFLRSMLGKLSEKLDQLEKNLELKFDVLDENQSKLSEDLMEFR
RDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSTGDLLFSGS
SDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGNKLYSGSADCTIIVWDIQTLQKVNTI
RAHDNPVCTLVSSNNMLFSGSLKAIKVWDILGTELKLKKELTGLNHWVRALVASQNYLYS
GSYQTIKIWDIRTLECVHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTL
TGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGR
LFSGAVDSTVKVWTC
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaagtaagatccctcgctgcaacaggtactttggaggagcaacagcaggggtc
agtgtccctgccacagaaagcaacaacgggaagcatactagaatggagactactttcgga
cctgcattttcaacagttaccactgttactaaagctgaaggaacaaacactttcaaacag
catcacaggaccccttcttgctcaagcactatgagctacacacccagggacgaggatgat
gtcatgcctcccatcggcacaccacgcagatctgactctgcaatatcagtccgttccctg
cactcggattccaacatgtctctgcgctccacttattctttgcatgaagaggaggaggag
gcggagcctgtggtttttgctgaacagccctcagtgaaactctgctgtcagctctgctgt
gtggttttcaaggatcctgttataacaacttgcgggcacaccttctgtagaagatgcgcc
ttaaattctgagaagtgccccgtggacaatgcaaagctcacagtggtggtgaataacatc
gctgtggctgagcagattggggagctctttattcactgtaaatgtggctgccgacccgcc
tccagtggcaagccagcggcctttgaggtggacccgcatggctgccccttcaccatcaaa
ctcagtgccagaaaagaccatgaatcaagctgtgactataggccggttcgctgtcccaac
aaccctaactgcccccctctcctgaagatgaacctggaggcccacctcaaacagtgtgaa
cacatcaagtgcccccactccaaatatgggtgtacatttataggtaaccaggacacatat
gaaacgcacctagagatgtgcaagtttgagggtctgaaggagttcctccaacagacggac
gatcgtttccacgagatgcagttggcactggcacagaaggaccaggatatcgccttcctg
cgctccatgttgggcaaactctctgagaaactggaccagctggagaagaacctggagctc
aagtttgatgtgttggatgaaaaccaaagcaaactgagtgaggacctcatggagtttcgg
agagatgcatcaatgctcaatgatgagctttcccacatcaatgccaggttgaatatggga
atccttggatcctatgatcctcagcagatattcaagtgtaagggtacctttgttggtcac
caaggtcctgtttggtgcctttgtgtttactcaaccggggacctgttattcagcggctcc
tcagataaaacgattaaggtgtgggacacctgcactacatacaagtgccagaagaccctg
gagggacatgatgggatcgtgctggctctctgtattcaagggaacaagttgtacagtgga
tctgcagactgtactataattgtttgggatatacagactctacagaaagtgaacactatt
cgagcacatgacaaccccgtgtgcacgctggtttcatcaaacaacatgctcttcagtgga
tctctcaaagcgatcaaggtgtgggatatcctgggcaccgagctgaagctgaagaaggag
ttgaccggcctcaaccactgggtccgggcactggtcgcctctcagaactacctgtacagt
gggtcgtatcagacaatcaagatctgggatattcgcactctggaatgtgtccatgtgcta
cagacctcaggtgggagtgtctactccattgcagtgaccaatcaccacattgtctgtggc
acctatgaaaatctcatccacgtgtgggatattgaatcgaaggagcaggtacggactctg
actggccatgtgggcacggtgtatgctctggctgttatctccactccagatcaaaccaaa
gtgttcagtgcgtcctacgacagatctctcagggtgtggagtatggataatatgatctgt
acccagactctgctgaggcaccagggcagtgtgactgctctcgccgtgtccagaggacgc
ctgttctcgggggctgtcgacagcaccgtcaaggtctggacctgctaa
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